Gene annotation
Transcriptome id Sobic.001G153900.1
Synonym Sb01g013370
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5WR52
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF147
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G17450 : RING-H2 finger A3A
RAP-DB (Rice) LOC_Os03g44636.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G153900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G289200 3-5 exonuclease domain-containing protein, putative, expressed -
2 Sobic.002G308400 "MYB transcription factor(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659858)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
3 Sobic.007G194100 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
4 Sobic.009G025100 transporter, putative, expressed -
5 Sobic.001G442200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, putative, expressed K14379: tartrate-resistant acid phosphatase type 5
6 Sobic.006G244500 nuclease PA3, putative, expressed -
7 Sobic.004G067900 expressed protein -
8 Sobic.003G000500 BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed -
9 Sobic.002G240700 OsSub58 - Putative Subtilisin homologue, expressed -
10 Sobic.007G204350 - -
11 Sobic.003G430100 Phosphoesterase family protein(PubMedID : 24906815)@phosphoesterase family protein, putative, expressed K01114: phospholipase C
12 Sobic.009G071600 no apical meristem protein, putative, expressed -
13 Sobic.005G158901 - -
14 Sobic.005G003750 - -
15 Sobic.008G039750 - -
16 Sobic.004G318400 MTD1, putative, expressed -
17 Sobic.004G155300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.010G227400 glycosyl hydrolase, family 31, putative, expressed K01187: alpha-glucosidase
19 Sobic.008G125400 expressed protein -
20 Sobic.004G196800 tetratricopeptide repeat containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G153900 Sobic001G153900 Sobic003G289200 Sobic003G289200 Sobic001G153900--Sobic003G289200 Sobic002G308400 Sobic002G308400 Sobic001G153900--Sobic002G308400 Sobic007G194100 Sobic007G194100 Sobic001G153900--Sobic007G194100 Sobic009G025100 Sobic009G025100 Sobic001G153900--Sobic009G025100 Sobic001G442200 Sobic001G442200 Sobic001G153900--Sobic001G442200 Sobic006G244500 Sobic006G244500 Sobic001G153900--Sobic006G244500 Sobic004G067900 Sobic004G067900 Sobic001G153900--Sobic004G067900 Sobic003G000500 Sobic003G000500 Sobic001G153900--Sobic003G000500 Sobic002G240700 Sobic002G240700 Sobic001G153900--Sobic002G240700 Sobic003G085566 Sobic003G085566 Sobic003G289200--Sobic003G085566 Sobic007G217900 Sobic007G217900 Sobic003G289200--Sobic007G217900 Sobic003G295500 Sobic003G295500 Sobic003G289200--Sobic003G295500 Sobic004G028700 Sobic004G028700 Sobic003G289200--Sobic004G028700 Sobic008G043800 Sobic008G043800 Sobic003G289200--Sobic008G043800 Sobic004G058800 Sobic004G058800 Sobic003G289200--Sobic004G058800 Sobic003G289200--Sobic001G153900 Sobic001G079401 Sobic001G079401 Sobic003G289200--Sobic001G079401 Sobic009G041200 Sobic009G041200 Sobic003G289200--Sobic009G041200 Sobic002G308400--Sobic004G067900 Sobic002G308400--Sobic007G194100 Sobic002G308400--Sobic006G244500 Sobic001G106400 Sobic001G106400 Sobic002G308400--Sobic001G106400 Sobic003G295000 Sobic003G295000 Sobic002G308400--Sobic003G295000 Sobic002G308400--Sobic002G240700 Sobic010G037200 Sobic010G037200 Sobic002G308400--Sobic010G037200 Sobic002G308400--Sobic001G442200 Sobic006G066600 Sobic006G066600 Sobic002G308400--Sobic006G066600 Sobic007G194100--Sobic002G240700 Sobic007G194100--Sobic010G037200 Sobic009G199300 Sobic009G199300 Sobic007G194100--Sobic009G199300 Sobic007G194100--Sobic002G308400 Sobic005G098700 Sobic005G098700 Sobic007G194100--Sobic005G098700 Sobic007G194100--Sobic009G025100 Sobic007G194100--Sobic004G067900 Sobic007G208200 Sobic007G208200 Sobic007G194100--Sobic007G208200 Sobic007G194100--Sobic001G442200 Sobic001G170500 Sobic001G170500 Sobic009G025100--Sobic001G170500 Sobic008G039700 Sobic008G039700 Sobic009G025100--Sobic008G039700 Sobic009G025100--Sobic010G037200 Sobic010G168500 Sobic010G168500 Sobic009G025100--Sobic010G168500 Sobic008G081700 Sobic008G081700 Sobic009G025100--Sobic008G081700 Sobic009G071600 Sobic009G071600 Sobic009G025100--Sobic009G071600 Sobic010G227400 Sobic010G227400 Sobic009G025100--Sobic010G227400 Sobic008G088450 Sobic008G088450 Sobic009G025100--Sobic008G088450 Sobic002G338600 Sobic002G338600 Sobic009G025100--Sobic002G338600 Sobic007G150700 Sobic007G150700 Sobic001G442200--Sobic007G150700 Sobic004G196800 Sobic004G196800 Sobic001G442200--Sobic004G196800 Sobic001G442200--Sobic005G098700 Sobic001G442200--Sobic010G168500 Sobic007G172100 Sobic007G172100 Sobic001G442200--Sobic007G172100 Sobic001G442200--Sobic010G037200 Sobic002G293100 Sobic002G293100 Sobic001G442200--Sobic002G293100 Sobic005G171800 Sobic005G171800 Sobic001G442200--Sobic005G171800 Sobic001G442200--Sobic007G194100 Sobic009G009800 Sobic009G009800 Sobic006G244500--Sobic009G009800 Sobic003G062200 Sobic003G062200 Sobic006G244500--Sobic003G062200 Sobic003G376000 Sobic003G376000 Sobic006G244500--Sobic003G376000 Sobic005G158901 Sobic005G158901 Sobic006G244500--Sobic005G158901 Sobic006G151001 Sobic006G151001 Sobic006G244500--Sobic006G151001 Sobic008G037000 Sobic008G037000 Sobic006G244500--Sobic008G037000 Sobic006G096200 Sobic006G096200 Sobic006G244500--Sobic006G096200 Sobic010G031600 Sobic010G031600 Sobic006G244500--Sobic010G031600 Sobic001G277800 Sobic001G277800 Sobic006G244500--Sobic001G277800 Sobic004G067900--Sobic002G308400 Sobic004G067900--Sobic006G244500 Sobic004G067900--Sobic007G194100 Sobic004G067900--Sobic003G062200 Sobic004G067900--Sobic003G295000 Sobic004G067900--Sobic006G066600 Sobic002G240800 Sobic002G240800 Sobic004G067900--Sobic002G240800 Sobic007G034600 Sobic007G034600 Sobic004G067900--Sobic007G034600 Sobic004G067900--Sobic001G106400 Sobic003G000500--Sobic006G244500 Sobic003G000500--Sobic003G062200 Sobic003G000500--Sobic009G009800 Sobic003G095600 Sobic003G095600 Sobic003G000500--Sobic003G095600 Sobic003G000500--Sobic003G376000 Sobic003G000500--Sobic004G067900 Sobic003G000500--Sobic006G096200 Sobic003G000500--Sobic008G037000 Sobic007G108000 Sobic007G108000 Sobic003G000500--Sobic007G108000 Sobic002G240700--Sobic007G194100 Sobic002G240700--Sobic009G199300 Sobic002G240700--Sobic004G067900 Sobic002G240700--Sobic005G098700 Sobic004G102900 Sobic004G102900 Sobic002G240700--Sobic004G102900 Sobic002G240700--Sobic007G208200 Sobic002G240700--Sobic002G308400 Sobic003G304500 Sobic003G304500 Sobic002G240700--Sobic003G304500 Sobic004G210000 Sobic004G210000 Sobic002G240700--Sobic004G210000
Octagon: transcription factors


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