Gene annotation
Transcriptome id Sobic.001G160500.1
Synonym Sb01g014020, ATPAL1, PAL1
Functional annotation phenylalanine ammonia-lyase, putative, expressed
UniProt C5WS41
Pfam PF00221
Panther DB PTHR10362 PTHR10362:SF20
NCBI CDD -
KEGG Orthology K10775; phenylalanine ammonia-lyase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G37040 : PHE ammonia lyase 1
RAP-DB (Rice) LOC_Os11g48110.1 : phenylalanine ammonia-lyase, putative, expressed
MaizeGDB (Corn) Zm00025a021100 , Zm00025a021102 , Zm00025a032035 , Zm00025a032034 , Zm00025a032030 , Zm00025a007342 , Zm00025a010654 , Zm00025a010653
Brachypodium KQJ83619 , KQK00065 , KQK00064 , KQK00414 , KQK00415
Barley HORVU2Hr1G089440.14 , HORVU2Hr1G089440.13 , HORVU2Hr1G089440.12 , HORVU2Hr1G089440.11 , HORVU2Hr1G089440.10 , HORVU6Hr1G058820.7 , HORVU6Hr1G058820.6 , HORVU6Hr1G058820.5 , HORVU6Hr1G058820.4 , HORVU6Hr1G058820.2 , HORVU6Hr1G058820.1 , HORVU6Hr1G058820.9 , HORVU6Hr1G058820.8 , HORVU0Hr1G016330.3 , HORVU0Hr1G016330.2 , HORVU0Hr1G016330.1 , HORVU0Hr1G016330.6 , HORVU0Hr1G016330.9 , HORVU0Hr1G016330.8 , HORVU1Hr1G022060.1 , HORVU1Hr1G022060.2 , HORVU0Hr1G016330.10 , HORVU2Hr1G089440.9 , HORVU2Hr1G089440.8 , HORVU2Hr1G089440.6 , HORVU2Hr1G089440.5 , HORVU2Hr1G089440.4 , HORVU2Hr1G089440.3 , HORVU2Hr1G089440.2 , HORVU6Hr1G058820.12 , HORVU6Hr1G058820.11
Wheat TraesCS6A02G222900 , TraesCS1D02G039500 , TraesCS5B02G468300 , TraesCS2A02G381000 , TraesCS1B02G048400 , TraesCS1B02G048400 , TraesCS1B02G048500 , TraesCS1B02G048200 , TraesCS6D02G212200 , TraesCS6D02G212200 , TraesCS1B02G048500 , TraesCS6B02G258400 , TraesCS6B02G258400 , TraesCS6B02G258400 , TraesCS1B02G048100 , TraesCS1B02G048100 , TraesCS1A02G037800 , TraesCS6A02G222800 , TraesCS6B02G258500 , TraesCS6B02G258500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G277600 TKL_IRAK_DUF26-la.5 - DUF26 kinases have homology to DUF26 containing loci, expressed -
2 Sobic.004G148400 Cupin domain containing protein, expressed -
3 Sobic.001G506500 exostosin family domain containing protein, expressed -
4 Sobic.005G048400 NBS-LRR disease resistance protein, putative, expressed K13457: RPM1, disease resistance protein RPM1
5 Sobic.001G076300 EF hand family protein, putative, expressed K13448: calcium-binding protein CML
6 Sobic.001G499701 - -
7 Sobic.002G063566 - -
8 Sobic.002G273400 "domain confirmed by Pfam database, expressed in leaf, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA26 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
9 Sobic.009G098000 expressed protein -
10 Sobic.007G149000 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@cytochrome P450, putative, expressed -
11 Sobic.003G176300 - -
12 Sobic.003G094700 glycosyltransferase protein, putative, expressed -
13 Sobic.003G240500 glycosyl transferase, group 1 domain containing protein, expressed -
14 Sobic.005G012600 LTPL10 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
15 Sobic.002G091700 MLO domain containing protein, putative, expressed K08472: mlo protein
16 Sobic.001G526500 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
17 Sobic.005G220800 receptor-like protein kinase 2 precursor, putative, expressed -
18 Sobic.006G133200 expressed protein -
19 Sobic.004G308500 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
20 Sobic.006G004900 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15919: glyoxylate/hydroxypyruvate reductase


Gene co-expression network
sample Sobic001G160500 Sobic001G160500 Sobic001G277600 Sobic001G277600 Sobic001G160500--Sobic001G277600 Sobic004G148400 Sobic004G148400 Sobic001G160500--Sobic004G148400 Sobic001G506500 Sobic001G506500 Sobic001G160500--Sobic001G506500 Sobic005G048400 Sobic005G048400 Sobic001G160500--Sobic005G048400 Sobic001G076300 Sobic001G076300 Sobic001G160500--Sobic001G076300 Sobic001G499701 Sobic001G499701 Sobic001G160500--Sobic001G499701 Sobic002G063566 Sobic002G063566 Sobic001G160500--Sobic002G063566 Sobic002G273400 Sobic002G273400 Sobic001G160500--Sobic002G273400 Sobic009G098000 Sobic009G098000 Sobic001G160500--Sobic009G098000 Sobic005G110514 Sobic005G110514 Sobic001G277600--Sobic005G110514 Sobic001G277600--Sobic005G048400 Sobic003G240500 Sobic003G240500 Sobic001G277600--Sobic003G240500 Sobic010G241700 Sobic010G241700 Sobic001G277600--Sobic010G241700 Sobic001G326400 Sobic001G326400 Sobic001G277600--Sobic001G326400 Sobic004G308500 Sobic004G308500 Sobic001G277600--Sobic004G308500 Sobic006G133200 Sobic006G133200 Sobic001G277600--Sobic006G133200 Sobic004G003100 Sobic004G003100 Sobic001G277600--Sobic004G003100 Sobic001G277600--Sobic001G506500 Sobic002G286566 Sobic002G286566 Sobic004G148400--Sobic002G286566 Sobic002G417101 Sobic002G417101 Sobic004G148400--Sobic002G417101 Sobic004G121500 Sobic004G121500 Sobic004G148400--Sobic004G121500 Sobic004G148400--Sobic001G499701 Sobic004G148400--Sobic001G160500 Sobic002G281100 Sobic002G281100 Sobic004G148400--Sobic002G281100 Sobic002G091700 Sobic002G091700 Sobic004G148400--Sobic002G091700 Sobic004G148400--Sobic002G063566 Sobic001G173251 Sobic001G173251 Sobic004G148400--Sobic001G173251 Sobic010G082100 Sobic010G082100 Sobic001G506500--Sobic010G082100 Sobic001G506500--Sobic003G240500 Sobic001G506500--Sobic005G048400 Sobic003G176300 Sobic003G176300 Sobic001G506500--Sobic003G176300 Sobic007G007300 Sobic007G007300 Sobic001G506500--Sobic007G007300 Sobic001G506500--Sobic004G308500 Sobic001G070100 Sobic001G070100 Sobic001G506500--Sobic001G070100 Sobic001G526500 Sobic001G526500 Sobic001G506500--Sobic001G526500 Sobic007G149000 Sobic007G149000 Sobic001G506500--Sobic007G149000 Sobic005G048400--Sobic001G070100 Sobic005G048400--Sobic001G506500 Sobic005G048400--Sobic001G277600 Sobic005G048400--Sobic003G176300 Sobic005G048400--Sobic003G240500 Sobic005G048400--Sobic010G082100 Sobic005G048400--Sobic004G308500 Sobic001G506700 Sobic001G506700 Sobic005G048400--Sobic001G506700 Sobic005G048400--Sobic005G110514 Sobic001G076300--Sobic009G098000 Sobic001G522200 Sobic001G522200 Sobic001G076300--Sobic001G522200 Sobic006G133300 Sobic006G133300 Sobic001G076300--Sobic006G133300 Sobic001G506100 Sobic001G506100 Sobic001G076300--Sobic001G506100 Sobic004G080300 Sobic004G080300 Sobic001G076300--Sobic004G080300 Sobic009G079200 Sobic009G079200 Sobic001G076300--Sobic009G079200 Sobic001G314000 Sobic001G314000 Sobic001G076300--Sobic001G314000 Sobic001G076300--Sobic003G176300 Sobic005G049350 Sobic005G049350 Sobic001G076300--Sobic005G049350 Sobic001G499701--Sobic005G049350 Sobic001G499701--Sobic003G176300 Sobic001G499701--Sobic007G149000 Sobic005G216700 Sobic005G216700 Sobic001G499701--Sobic005G216700 Sobic009G015200 Sobic009G015200 Sobic001G499701--Sobic009G015200 Sobic001G499701--Sobic009G098000 Sobic007G019900 Sobic007G019900 Sobic001G499701--Sobic007G019900 Sobic009G035900 Sobic009G035900 Sobic001G499701--Sobic009G035900 Sobic005G220740 Sobic005G220740 Sobic001G499701--Sobic005G220740 Sobic005G094400 Sobic005G094400 Sobic002G063566--Sobic005G094400 Sobic002G063566--Sobic002G091700 Sobic010G253250 Sobic010G253250 Sobic002G063566--Sobic010G253250 Sobic005G062300 Sobic005G062300 Sobic002G063566--Sobic005G062300 Sobic006G075650 Sobic006G075650 Sobic002G063566--Sobic006G075650 Sobic002G063566--Sobic002G417101 Sobic005G014100 Sobic005G014100 Sobic002G063566--Sobic005G014100 Sobic002G063566--Sobic004G121500 Sobic008G159200 Sobic008G159200 Sobic002G063566--Sobic008G159200 Sobic007G206250 Sobic007G206250 Sobic002G273400--Sobic007G206250 Sobic002G273400--Sobic010G253250 Sobic002G273400--Sobic005G014100 Sobic002G273400--Sobic002G091700 Sobic002G273400--Sobic002G063566 Sobic002G273400--Sobic001G277600 Sobic002G273400--Sobic005G094400 Sobic002G273400--Sobic005G062300 Sobic002G199200 Sobic002G199200 Sobic002G273400--Sobic002G199200 Sobic009G098000--Sobic005G049350 Sobic001G521600 Sobic001G521600 Sobic009G098000--Sobic001G521600 Sobic004G337950 Sobic004G337950 Sobic009G098000--Sobic004G337950 Sobic009G098000--Sobic007G149000 Sobic009G098000--Sobic009G079200 Sobic009G098000--Sobic003G176300 Sobic009G098000--Sobic001G506100 Sobic009G018300 Sobic009G018300 Sobic009G098000--Sobic009G018300 Sobic009G098000--Sobic004G080300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.