Gene annotation
Transcriptome id Sobic.001G173400.1
Synonym Sb01g015100
Functional annotation Regulator of chromosome condensation domain containing protein, expressed
UniProt A0A1Z5S663
Pfam PF00415
Panther DB PTHR22870:SF170 PTHR22870
NCBI CDD KOG1427; Uncharacterized conserved protein, contains RCC1 domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G02300 : Regulator of chromosome condensation (RCC1) family protein
RAP-DB (Rice) LOC_Os03g40260.1 : Regulator of chromosome condensation domain containing protein, expressed
MaizeGDB (Corn) Zm00025a007203
Brachypodium KQK14268 , KQK14269 , KQK14270
Barley HORVU5Hr1G053180.19 , HORVU5Hr1G053180.14 , HORVU5Hr1G053180.16 , HORVU5Hr1G053180.17 , HORVU5Hr1G053180.11 , HORVU5Hr1G053180.12 , HORVU5Hr1G053180.13 , HORVU5Hr1G053180.6 , HORVU5Hr1G053180.7 , HORVU5Hr1G053180.4 , HORVU5Hr1G053180.5 , HORVU5Hr1G053180.2 , HORVU5Hr1G053180.3 , HORVU5Hr1G053180.1 , HORVU5Hr1G053180.8 , HORVU5Hr1G053180.9 , HORVU5Hr1G053180.21 , HORVU5Hr1G053180.20 , HORVU5Hr1G053180.23 , HORVU5Hr1G053180.22 , HORVU5Hr1G053180.25 , HORVU5Hr1G053180.24 , HORVU5Hr1G053180.27 , HORVU5Hr1G053180.26 , HORVU5Hr1G053180.28
Wheat TraesCS5D02G177900 , TraesCS5B02G170800 , TraesCS5B02G170800 , TraesCS5A02G173400
Populus -


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cDNA sequences
Sobic.001G173400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G133700 transporter, major facilitator family, putative, expressed K08193: MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), other
2 Sobic.004G177500 expressed protein -
3 Sobic.008G177900 NBS-LRR disease resistance protein, putative, expressed -
4 Sobic.002G334900 S-domain receptor-like protein kinase, putative, expressed -
5 Sobic.006G074500 protein of unknown function DUF1279 domain containing protein, expressed -
6 Sobic.010G131300 ABB1 - Ankyrin repeat region with 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains, expressed K10520: ABTB1, ankyrin repeat and BTB/POZ domain-containing protein 1
7 Sobic.002G104500 disease resistance RPP13-like protein 1, putative, expressed -
8 Sobic.001G524900 ribosomal protein L5, putative, expressed K02931: RP-L5, MRPL5, large subunit ribosomal protein L5
9 Sobic.003G094500 glycosyltransferase, putative, expressed -
10 Sobic.003G050800 Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@phosphate/phosphoenolpyruvate translocator-related protein, putative, expressed K15283: solute carrier family 35, member E1
11 Sobic.010G015500 oligopeptide transporter, putative, expressed -
12 Sobic.006G101600 photoperiodic flowering time gene(PubMedID : 22394582)@FAD binding domain of DNA photolyase domain containing protein, expressed K12118: cryptochrome 1
13 Sobic.001G000800 -(PubMedID : 26976818)@oxidoreductase/ transition metal ion binding protein, putative, expressed -
14 Sobic.001G087500 - -
15 Sobic.007G111500 expressed protein -
16 Sobic.002G116400 - -
17 Sobic.004G295900 cell division cycle protein 23, putative, expressed K03355: APC8, anaphase-promoting complex subunit 8
18 Sobic.003G418800 - -
19 Sobic.009G143900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@powdery mildew resistant protein 5, putative, expressed -
20 Sobic.001G423000 expressed protein -


Gene co-expression network
sample Sobic001G173400 Sobic001G173400 Sobic003G133700 Sobic003G133700 Sobic001G173400--Sobic003G133700 Sobic004G177500 Sobic004G177500 Sobic001G173400--Sobic004G177500 Sobic008G177900 Sobic008G177900 Sobic001G173400--Sobic008G177900 Sobic002G334900 Sobic002G334900 Sobic001G173400--Sobic002G334900 Sobic006G074500 Sobic006G074500 Sobic001G173400--Sobic006G074500 Sobic010G131300 Sobic010G131300 Sobic001G173400--Sobic010G131300 Sobic002G104500 Sobic002G104500 Sobic001G173400--Sobic002G104500 Sobic001G524900 Sobic001G524900 Sobic001G173400--Sobic001G524900 Sobic003G094500 Sobic003G094500 Sobic001G173400--Sobic003G094500 Sobic003G050800 Sobic003G050800 Sobic003G133700--Sobic003G050800 Sobic003G133700--Sobic006G074500 Sobic006G101600 Sobic006G101600 Sobic003G133700--Sobic006G101600 Sobic004G224000 Sobic004G224000 Sobic003G133700--Sobic004G224000 Sobic002G430100 Sobic002G430100 Sobic003G133700--Sobic002G430100 Sobic010G249600 Sobic010G249600 Sobic003G133700--Sobic010G249600 Sobic007G077466 Sobic007G077466 Sobic003G133700--Sobic007G077466 Sobic001G184300 Sobic001G184300 Sobic003G133700--Sobic001G184300 Sobic009G213900 Sobic009G213900 Sobic003G133700--Sobic009G213900 Sobic002G320700 Sobic002G320700 Sobic004G177500--Sobic002G320700 Sobic002G118400 Sobic002G118400 Sobic004G177500--Sobic002G118400 Sobic007G174200 Sobic007G174200 Sobic004G177500--Sobic007G174200 Sobic001G061000 Sobic001G061000 Sobic004G177500--Sobic001G061000 Sobic002G227100 Sobic002G227100 Sobic004G177500--Sobic002G227100 Sobic007G200300 Sobic007G200300 Sobic004G177500--Sobic007G200300 Sobic002G280001 Sobic002G280001 Sobic004G177500--Sobic002G280001 Sobic006G170800 Sobic006G170800 Sobic004G177500--Sobic006G170800 Sobic004G203600 Sobic004G203600 Sobic004G177500--Sobic004G203600 Sobic008G177900--Sobic004G177500 Sobic008G177900--Sobic001G173400 Sobic001G423000 Sobic001G423000 Sobic008G177900--Sobic001G423000 Sobic008G177900--Sobic001G061000 Sobic008G177900--Sobic002G118400 Sobic005G145700 Sobic005G145700 Sobic008G177900--Sobic005G145700 Sobic009G202900 Sobic009G202900 Sobic008G177900--Sobic009G202900 Sobic003G159400 Sobic003G159400 Sobic008G177900--Sobic003G159400 Sobic008G177900--Sobic002G320700 Sobic010G196200 Sobic010G196200 Sobic002G334900--Sobic010G196200 Sobic003G250340 Sobic003G250340 Sobic002G334900--Sobic003G250340 Sobic001G086100 Sobic001G086100 Sobic002G334900--Sobic001G086100 Sobic009G187900 Sobic009G187900 Sobic002G334900--Sobic009G187900 Sobic008G045300 Sobic008G045300 Sobic002G334900--Sobic008G045300 Sobic004G328800 Sobic004G328800 Sobic002G334900--Sobic004G328800 Sobic004G293600 Sobic004G293600 Sobic002G334900--Sobic004G293600 Sobic004G162600 Sobic004G162600 Sobic002G334900--Sobic004G162600 Sobic001G169000 Sobic001G169000 Sobic002G334900--Sobic001G169000 Sobic002G377400 Sobic002G377400 Sobic006G074500--Sobic002G377400 Sobic003G440500 Sobic003G440500 Sobic006G074500--Sobic003G440500 Sobic006G074500--Sobic003G133700 Sobic006G074500--Sobic003G050800 Sobic002G398600 Sobic002G398600 Sobic006G074500--Sobic002G398600 Sobic009G223900 Sobic009G223900 Sobic006G074500--Sobic009G223900 Sobic002G187900 Sobic002G187900 Sobic006G074500--Sobic002G187900 Sobic006G074500--Sobic010G249600 Sobic003G365200 Sobic003G365200 Sobic006G074500--Sobic003G365200 Sobic010G131300--Sobic001G173400 Sobic010G131300--Sobic003G133700 Sobic001G093500 Sobic001G093500 Sobic010G131300--Sobic001G093500 Sobic004G074000 Sobic004G074000 Sobic010G131300--Sobic004G074000 Sobic010G131300--Sobic001G524900 Sobic004G107500 Sobic004G107500 Sobic010G131300--Sobic004G107500 Sobic002G391000 Sobic002G391000 Sobic010G131300--Sobic002G391000 Sobic001G491900 Sobic001G491900 Sobic010G131300--Sobic001G491900 Sobic007G111500 Sobic007G111500 Sobic010G131300--Sobic007G111500 Sobic003G418800 Sobic003G418800 Sobic002G104500--Sobic003G418800 Sobic002G104500--Sobic003G159400 Sobic002G350800 Sobic002G350800 Sobic002G104500--Sobic002G350800 Sobic001G140101 Sobic001G140101 Sobic002G104500--Sobic001G140101 Sobic005G232100 Sobic005G232100 Sobic002G104500--Sobic005G232100 Sobic010G278400 Sobic010G278400 Sobic002G104500--Sobic010G278400 Sobic009G149600 Sobic009G149600 Sobic002G104500--Sobic009G149600 Sobic001G033800 Sobic001G033800 Sobic002G104500--Sobic001G033800 Sobic004G295900 Sobic004G295900 Sobic002G104500--Sobic004G295900 Sobic008G119100 Sobic008G119100 Sobic001G524900--Sobic008G119100 Sobic002G076450 Sobic002G076450 Sobic001G524900--Sobic002G076450 Sobic010G051900 Sobic010G051900 Sobic001G524900--Sobic010G051900 Sobic001G524900--Sobic002G227100 Sobic001G524900--Sobic007G174200 Sobic001G367900 Sobic001G367900 Sobic001G524900--Sobic001G367900 Sobic010G242000 Sobic010G242000 Sobic001G524900--Sobic010G242000 Sobic009G047033 Sobic009G047033 Sobic001G524900--Sobic009G047033 Sobic006G152801 Sobic006G152801 Sobic001G524900--Sobic006G152801 Sobic003G094500--Sobic009G187900 Sobic003G094500--Sobic002G334900 Sobic004G244500 Sobic004G244500 Sobic003G094500--Sobic004G244500 Sobic005G038700 Sobic005G038700 Sobic003G094500--Sobic005G038700 Sobic008G005700 Sobic008G005700 Sobic003G094500--Sobic008G005700 Sobic003G094500--Sobic010G196200 Sobic003G130100 Sobic003G130100 Sobic003G094500--Sobic003G130100 Sobic001G087500 Sobic001G087500 Sobic003G094500--Sobic001G087500 Sobic003G094500--Sobic004G162600
Octagon: transcription factors


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