Gene annotation
Transcriptome id Sobic.001G180400.1
Synonym AGL80, FEM111
Functional annotation OsMADS89 - MADS-box family gene with M-gamma type-box, expressed
UniProt A0A1B6QJL9
Pfam PF00319
Panther DB PTHR11945 PTHR11945:SF188
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT5G48670 : AGAMOUS-like 80
RAP-DB (Rice) LOC_Os01g18440.1 : OsMADS89 - MADS-box family gene with M-gamma type-box, expressed
MaizeGDB (Corn) -
Brachypodium KQK04003 , PNT74963
Barley HORVU6Hr1G085570.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@SCP-like extracellular protein, expressed -
2 Sobic.001G242000 CSLF7 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
3 Sobic.007G054900 plant protein of unknown function domain containing protein, expressed -
4 Sobic.007G215600 OsWAK73 - OsWAK receptor-like protein kinase, expressed -
5 Sobic.001G449100 E2F-related protein, putative, expressed -
6 Sobic.002G369400 Sulfotransferase family protein (At)(PubMedID : 27208977)@sulfotransferase domain containing protein, expressed -
7 Sobic.010G270700 GDSL-like lipase/acylhydrolase, putative, expressed -
8 Sobic.003G282100 POEI44 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
9 Sobic.010G009900 - -
10 Sobic.002G416800 peroxidase precursor, putative, expressed K00430: peroxidase
11 Sobic.004G138900 AAT1, putative, expressed -
12 Sobic.008G127933 - -
13 Sobic.006G158400 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
14 Sobic.006G154400 GEM, putative, expressed -
15 Sobic.008G128200 - -
16 Sobic.001G331200 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
17 Sobic.008G027600 zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.002G243000 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
19 Sobic.008G158100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
20 Sobic.007G204700 expressed protein -


Gene co-expression network
sample Sobic001G180400 Sobic001G180400 Sobic002G023200 Sobic002G023200 Sobic001G180400--Sobic002G023200 Sobic001G242000 Sobic001G242000 Sobic001G180400--Sobic001G242000 Sobic007G054900 Sobic007G054900 Sobic001G180400--Sobic007G054900 Sobic007G215600 Sobic007G215600 Sobic001G180400--Sobic007G215600 Sobic001G449100 Sobic001G449100 Sobic001G180400--Sobic001G449100 Sobic002G369400 Sobic002G369400 Sobic001G180400--Sobic002G369400 Sobic010G270700 Sobic010G270700 Sobic001G180400--Sobic010G270700 Sobic003G282100 Sobic003G282100 Sobic001G180400--Sobic003G282100 Sobic010G009900 Sobic010G009900 Sobic001G180400--Sobic010G009900 Sobic002G023200--Sobic001G242000 Sobic002G023200--Sobic010G270700 Sobic002G023200--Sobic007G054900 Sobic002G023200--Sobic003G282100 Sobic002G023200--Sobic001G449100 Sobic008G173601 Sobic008G173601 Sobic002G023200--Sobic008G173601 Sobic002G416800 Sobic002G416800 Sobic002G023200--Sobic002G416800 Sobic010G081100 Sobic010G081100 Sobic002G023200--Sobic010G081100 Sobic002G023200--Sobic002G369400 Sobic001G242000--Sobic007G054900 Sobic001G242000--Sobic002G369400 Sobic002G063800 Sobic002G063800 Sobic001G242000--Sobic002G063800 Sobic001G330300 Sobic001G330300 Sobic001G242000--Sobic001G330300 Sobic001G242000--Sobic010G270700 Sobic010G062300 Sobic010G062300 Sobic001G242000--Sobic010G062300 Sobic006G050800 Sobic006G050800 Sobic001G242000--Sobic006G050800 Sobic001G242000--Sobic010G009900 Sobic001G242000--Sobic001G449100 Sobic007G054900--Sobic010G009900 Sobic007G054900--Sobic001G242000 Sobic008G158600 Sobic008G158600 Sobic007G054900--Sobic008G158600 Sobic004G292600 Sobic004G292600 Sobic007G054900--Sobic004G292600 Sobic002G012300 Sobic002G012300 Sobic007G054900--Sobic002G012300 Sobic005G011900 Sobic005G011900 Sobic007G054900--Sobic005G011900 Sobic007G054900--Sobic002G369400 Sobic001G162233 Sobic001G162233 Sobic007G054900--Sobic001G162233 Sobic008G158501 Sobic008G158501 Sobic007G054900--Sobic008G158501 Sobic004G148100 Sobic004G148100 Sobic007G215600--Sobic004G148100 Sobic006G162100 Sobic006G162100 Sobic007G215600--Sobic006G162100 Sobic005G177600 Sobic005G177600 Sobic007G215600--Sobic005G177600 Sobic007G215600--Sobic001G449100 Sobic004G189500 Sobic004G189500 Sobic007G215600--Sobic004G189500 Sobic009G145600 Sobic009G145600 Sobic007G215600--Sobic009G145600 Sobic004G148200 Sobic004G148200 Sobic007G215600--Sobic004G148200 Sobic007G215600--Sobic002G369400 Sobic006G154500 Sobic006G154500 Sobic007G215600--Sobic006G154500 Sobic003G079200 Sobic003G079200 Sobic001G449100--Sobic003G079200 Sobic002G243000 Sobic002G243000 Sobic001G449100--Sobic002G243000 Sobic001G449100--Sobic008G158600 Sobic006G240600 Sobic006G240600 Sobic001G449100--Sobic006G240600 Sobic001G449100--Sobic002G369400 Sobic001G449100--Sobic001G242000 Sobic001G449100--Sobic007G215600 Sobic001G449100--Sobic002G063800 Sobic004G161751 Sobic004G161751 Sobic001G449100--Sobic004G161751 Sobic008G027600 Sobic008G027600 Sobic002G369400--Sobic008G027600 Sobic002G369400--Sobic001G242000 Sobic001G114900 Sobic001G114900 Sobic002G369400--Sobic001G114900 Sobic002G369400--Sobic010G062300 Sobic002G369400--Sobic002G012300 Sobic002G369400--Sobic003G079200 Sobic008G022000 Sobic008G022000 Sobic002G369400--Sobic008G022000 Sobic002G369400--Sobic002G063800 Sobic002G369400--Sobic008G158501 Sobic010G270700--Sobic003G282100 Sobic008G009400 Sobic008G009400 Sobic010G270700--Sobic008G009400 Sobic010G270700--Sobic001G330300 SobicK026900 SobicK026900 Sobic010G270700--SobicK026900 Sobic004G297900 Sobic004G297900 Sobic010G270700--Sobic004G297900 Sobic003G299300 Sobic003G299300 Sobic010G270700--Sobic003G299300 Sobic008G127933 Sobic008G127933 Sobic010G270700--Sobic008G127933 Sobic003G311800 Sobic003G311800 Sobic010G270700--Sobic003G311800 Sobic009G109000 Sobic009G109000 Sobic010G270700--Sobic009G109000 Sobic003G282100--Sobic010G270700 Sobic003G282100--Sobic001G330300 Sobic003G007600 Sobic003G007600 Sobic003G282100--Sobic003G007600 Sobic003G282100--Sobic008G009400 Sobic003G282100--Sobic003G299300 Sobic006G103000 Sobic006G103000 Sobic003G282100--Sobic006G103000 Sobic002G176100 Sobic002G176100 Sobic003G282100--Sobic002G176100 Sobic003G282100--SobicK026900 Sobic009G111000 Sobic009G111000 Sobic003G282100--Sobic009G111000 Sobic010G009900--Sobic007G054900 Sobic010G009900--Sobic006G050800 Sobic009G116600 Sobic009G116600 Sobic010G009900--Sobic009G116600 Sobic010G009900--Sobic001G242000 Sobic010G009900--SobicK026900 Sobic010G045500 Sobic010G045500 Sobic010G009900--Sobic010G045500 Sobic010G009900--Sobic002G369400 Sobic003G136200 Sobic003G136200 Sobic010G009900--Sobic003G136200 Sobic010G009900--Sobic002G012300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.