Gene annotation
Transcriptome id Sobic.001G199000.1
Synonym TTN1, EMB133, Sb01g017540, TFCD, CHO
Functional annotation HEAT repeat family protein, putative, expressed
UniProt A0A1Z5S6T6
Pfam PF12612
Panther DB PTHR12658 PTHR12658:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G60740 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os10g36490.1 : HEAT repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a017461
Brachypodium KQJ97452
Barley HORVU1Hr1G047690.8 , HORVU1Hr1G047690.7 , HORVU1Hr1G047690.6 , HORVU1Hr1G047690.5 , HORVU1Hr1G047690.4 , HORVU1Hr1G047690.3 , HORVU1Hr1G047690.2 , HORVU1Hr1G047690.1 , HORVU1Hr1G047690.17 , HORVU1Hr1G047690.16 , HORVU1Hr1G047690.15 , HORVU1Hr1G047690.14 , HORVU1Hr1G047690.13 , HORVU1Hr1G047690.12 , HORVU1Hr1G047690.11 , HORVU1Hr1G047690.10 , HORVU1Hr1G047690.19 , HORVU1Hr1G047690.18 , HORVU1Hr1G047690.24 , HORVU1Hr1G047690.25 , HORVU1Hr1G047690.22 , HORVU1Hr1G047690.23 , HORVU1Hr1G047690.20 , HORVU1Hr1G047690.21
Wheat TraesCS1D02G178400 , TraesCS1D02G178400 , TraesCS1A02G180200 , TraesCS1B02G200300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G278300 OsPOP15 - Putative Prolyl Oligopeptidase homologue, expressed K01354: oligopeptidase B
2 Sobic.001G361750 - -
3 Sobic.010G150600 - -
4 Sobic.006G073700 expressed protein -
5 Sobic.004G228000 DUF1771 domain containing protein, putative, expressed -
6 Sobic.003G040500 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K03004: DNA-directed RNA polymerase I subunit RPA43
7 Sobic.003G281400 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20528920)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
8 Sobic.006G110600 - -
9 Sobic.001G309000 glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
10 Sobic.009G004300 ECT protein, putative, expressed -
11 Sobic.003G259000 - -
12 Sobic.002G314950 - -
13 Sobic.007G200300 lectin protein kinase family protein, putative, expressed -
14 Sobic.002G320700 expressed protein -
15 Sobic.001G527900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nascent polypeptide-associated complex subunit alpha, putative, expressed K03626: EGD2, nascent polypeptide-associated complex subunit alpha
16 Sobic.001G468200 MT-A70 domain containing protein, expressed -
17 Sobic.010G002500 integral membrane protein, putative, expressed -
18 Sobic.008G096150 - -
19 Sobic.009G200100 GDSL-like lipase/acylhydrolase, putative, expressed -
20 Sobic.009G184500 cysteine proteinase inhibitor precursor protein, putative, expressed -


Gene co-expression network
sample Sobic001G199000 Sobic001G199000 Sobic010G278300 Sobic010G278300 Sobic001G199000--Sobic010G278300 Sobic001G361750 Sobic001G361750 Sobic001G199000--Sobic001G361750 Sobic010G150600 Sobic010G150600 Sobic001G199000--Sobic010G150600 Sobic006G073700 Sobic006G073700 Sobic001G199000--Sobic006G073700 Sobic004G228000 Sobic004G228000 Sobic001G199000--Sobic004G228000 Sobic003G040500 Sobic003G040500 Sobic001G199000--Sobic003G040500 Sobic003G281400 Sobic003G281400 Sobic001G199000--Sobic003G281400 Sobic006G110600 Sobic006G110600 Sobic001G199000--Sobic006G110600 Sobic001G309000 Sobic001G309000 Sobic001G199000--Sobic001G309000 Sobic006G093400 Sobic006G093400 Sobic010G278300--Sobic006G093400 Sobic010G257300 Sobic010G257300 Sobic010G278300--Sobic010G257300 Sobic010G253700 Sobic010G253700 Sobic010G278300--Sobic010G253700 Sobic008G096900 Sobic008G096900 Sobic010G278300--Sobic008G096900 Sobic004G012100 Sobic004G012100 Sobic010G278300--Sobic004G012100 Sobic009G072400 Sobic009G072400 Sobic010G278300--Sobic009G072400 Sobic002G314950 Sobic002G314950 Sobic010G278300--Sobic002G314950 Sobic009G114900 Sobic009G114900 Sobic010G278300--Sobic009G114900 Sobic006G229600 Sobic006G229600 Sobic010G278300--Sobic006G229600 Sobic001G456650 Sobic001G456650 Sobic001G361750--Sobic001G456650 Sobic001G483200 Sobic001G483200 Sobic001G361750--Sobic001G483200 Sobic001G033200 Sobic001G033200 Sobic001G361750--Sobic001G033200 Sobic001G468200 Sobic001G468200 Sobic001G361750--Sobic001G468200 Sobic001G527900 Sobic001G527900 Sobic001G361750--Sobic001G527900 Sobic002G360701 Sobic002G360701 Sobic001G361750--Sobic002G360701 Sobic009G004300 Sobic009G004300 Sobic001G361750--Sobic009G004300 Sobic005G155001 Sobic005G155001 Sobic001G361750--Sobic005G155001 Sobic001G361750--Sobic006G093400 Sobic008G096150 Sobic008G096150 Sobic010G150600--Sobic008G096150 Sobic009G184500 Sobic009G184500 Sobic010G150600--Sobic009G184500 Sobic010G021401 Sobic010G021401 Sobic010G150600--Sobic010G021401 Sobic010G150600--Sobic005G155001 Sobic010G150600--Sobic009G004300 Sobic010G150600--Sobic002G360701 Sobic001G490600 Sobic001G490600 Sobic010G150600--Sobic001G490600 Sobic003G082401 Sobic003G082401 Sobic010G150600--Sobic003G082401 Sobic010G150600--Sobic001G309000 Sobic009G020800 Sobic009G020800 Sobic006G073700--Sobic009G020800 Sobic006G073700--Sobic010G150600 Sobic001G400101 Sobic001G400101 Sobic006G073700--Sobic001G400101 Sobic001G523300 Sobic001G523300 Sobic006G073700--Sobic001G523300 Sobic004G044500 Sobic004G044500 Sobic006G073700--Sobic004G044500 Sobic010G060701 Sobic010G060701 Sobic006G073700--Sobic010G060701 Sobic006G073700--Sobic001G361750 Sobic006G073700--Sobic008G096150 Sobic007G200200 Sobic007G200200 Sobic006G073700--Sobic007G200200 Sobic008G151900 Sobic008G151900 Sobic004G228000--Sobic008G151900 Sobic004G202750 Sobic004G202750 Sobic004G228000--Sobic004G202750 Sobic010G278400 Sobic010G278400 Sobic004G228000--Sobic010G278400 Sobic003G251900 Sobic003G251900 Sobic004G228000--Sobic003G251900 Sobic010G118401 Sobic010G118401 Sobic004G228000--Sobic010G118401 Sobic009G122201 Sobic009G122201 Sobic004G228000--Sobic009G122201 Sobic006G170800 Sobic006G170800 Sobic004G228000--Sobic006G170800 Sobic006G169600 Sobic006G169600 Sobic004G228000--Sobic006G169600 Sobic006G111400 Sobic006G111400 Sobic004G228000--Sobic006G111400 Sobic002G370100 Sobic002G370100 Sobic003G040500--Sobic002G370100 Sobic003G040500--Sobic001G309000 Sobic003G149900 Sobic003G149900 Sobic003G040500--Sobic003G149900 Sobic006G037000 Sobic006G037000 Sobic003G040500--Sobic006G037000 Sobic003G279600 Sobic003G279600 Sobic003G040500--Sobic003G279600 Sobic002G326200 Sobic002G326200 Sobic003G040500--Sobic002G326200 Sobic003G040500--Sobic001G523300 Sobic010G155901 Sobic010G155901 Sobic003G040500--Sobic010G155901 Sobic003G040500--Sobic006G110600 Sobic007G200300 Sobic007G200300 Sobic003G281400--Sobic007G200300 Sobic003G390600 Sobic003G390600 Sobic003G281400--Sobic003G390600 Sobic002G280001 Sobic002G280001 Sobic003G281400--Sobic002G280001 Sobic003G281400--Sobic001G361750 Sobic006G154900 Sobic006G154900 Sobic003G281400--Sobic006G154900 Sobic004G073166 Sobic004G073166 Sobic003G281400--Sobic004G073166 Sobic003G281400--Sobic002G360701 Sobic009G199900 Sobic009G199900 Sobic003G281400--Sobic009G199900 Sobic004G203600 Sobic004G203600 Sobic003G281400--Sobic004G203600 Sobic002G271900 Sobic002G271900 Sobic006G110600--Sobic002G271900 Sobic001G212701 Sobic001G212701 Sobic006G110600--Sobic001G212701 Sobic003G313700 Sobic003G313700 Sobic006G110600--Sobic003G313700 Sobic010G132300 Sobic010G132300 Sobic006G110600--Sobic010G132300 Sobic006G110600--Sobic002G326200 Sobic006G110600--Sobic006G229600 Sobic004G314750 Sobic004G314750 Sobic006G110600--Sobic004G314750 Sobic002G133600 Sobic002G133600 Sobic006G110600--Sobic002G133600 Sobic007G174100 Sobic007G174100 Sobic006G110600--Sobic007G174100 Sobic001G309000--Sobic003G279600 Sobic004G160950 Sobic004G160950 Sobic001G309000--Sobic004G160950 Sobic001G309000--Sobic008G096150 Sobic001G309000--Sobic001G212701 Sobic001G309000--Sobic007G174100 Sobic003G178400 Sobic003G178400 Sobic001G309000--Sobic003G178400 Sobic001G309000--Sobic010G132300 Sobic010G055600 Sobic010G055600 Sobic001G309000--Sobic010G055600 Sobic001G309000--Sobic006G110600
Octagon: transcription factors


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