Gene annotation
Transcriptome id Sobic.001G217200.2,Sobic.001G217200.3,Sobic.001G217200.1
Synonym IFL,REV-1, Sb01g019120, IFL1, REV
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Class III HD ZIP family protein (PubMedID : 23915383)
START domain containing protein, expressed
UniProt C5WYD4
Pfam PF00046 PF01852 PF08670
Panther DB PTHR24326 PTHR24326:SF279
NCBI CDD -
KEGG Orthology K09338; homeobox-leucine zipper protein
Gene Ontology GO:0003677; DNA binding GO:0008289lipid binding


Orthologs (automatic annotation)
TAIR AT5G60690 : Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
RAP-DB (Rice) LOC_Os10g33960.1,LOC_Os10g33960.2 : START domain containing protein, expressed
MaizeGDB (Corn) Zm00025a000157 , Zm00025a006577 , Zm00025a053557
Brachypodium KQK03195 , KQJ97131 , PNT67561
Barley HORVU4Hr1G090030.30 , HORVU4Hr1G090030.31 , HORVU5Hr1G061410.20 , HORVU5Hr1G061410.22 , HORVU5Hr1G061410.23 , HORVU5Hr1G061410.25 , HORVU5Hr1G061410.26 , HORVU5Hr1G061410.27 , HORVU5Hr1G061410.29 , HORVU3Hr1G026990.30 , HORVU3Hr1G026990.33 , HORVU3Hr1G026990.32 , HORVU1Hr1G041790.18 , HORVU1Hr1G041790.19 , HORVU1Hr1G041790.12 , HORVU1Hr1G041790.13 , HORVU1Hr1G041790.10 , HORVU1Hr1G041790.11 , HORVU1Hr1G041790.16 , HORVU1Hr1G041790.17 , HORVU1Hr1G041790.14 , HORVU1Hr1G041790.15 , HORVU4Hr1G090030.6 , HORVU4Hr1G090030.7 , HORVU4Hr1G090030.4 , HORVU4Hr1G090030.5 , HORVU4Hr1G090030.2 , HORVU4Hr1G090030.3 , HORVU4Hr1G090030.1 , HORVU4Hr1G090030.8 , HORVU4Hr1G090030.9 , HORVU1Hr1G041790.21 , HORVU1Hr1G041790.20 , HORVU3Hr1G026990.34 , HORVU3Hr1G026990.37 , HORVU5Hr1G061410.14 , HORVU5Hr1G061410.16 , HORVU5Hr1G061410.11 , HORVU5Hr1G061410.13 , HORVU5Hr1G061410.12 , HORVU5Hr1G061410.19 , HORVU5Hr1G061410.18 , HORVU4Hr1G090030.18 , HORVU4Hr1G090030.14 , HORVU4Hr1G090030.15 , HORVU4Hr1G090030.16 , HORVU4Hr1G090030.17 , HORVU4Hr1G090030.10 , HORVU4Hr1G090030.11 , HORVU4Hr1G090030.12 , HORVU3Hr1G026990.9 , HORVU3Hr1G026990.7 , HORVU3Hr1G026990.3 , HORVU3Hr1G026990.2 , HORVU3Hr1G026990.1 , HORVU5Hr1G061410.1 , HORVU5Hr1G061410.3 , HORVU5Hr1G061410.2 , HORVU5Hr1G061410.5 , HORVU5Hr1G061410.7 , HORVU5Hr1G061410.9 , HORVU5Hr1G061410.8 , HORVU3Hr1G026990.29 , HORVU3Hr1G026990.27 , HORVU3Hr1G026990.24 , HORVU3Hr1G026990.22 , HORVU3Hr1G026990.23 , HORVU3Hr1G026990.20 , HORVU3Hr1G026990.21 , HORVU1Hr1G041790.7 , HORVU4Hr1G090030.21 , HORVU4Hr1G090030.20 , HORVU4Hr1G090030.23 , HORVU4Hr1G090030.22 , HORVU4Hr1G090030.25 , HORVU4Hr1G090030.24 , HORVU4Hr1G090030.27 , HORVU4Hr1G090030.26 , HORVU4Hr1G090030.29 , HORVU4Hr1G090030.28 , HORVU1Hr1G041790.1 , HORVU1Hr1G041790.2 , HORVU1Hr1G041790.3 , HORVU1Hr1G041790.4 , HORVU1Hr1G041790.5 , HORVU1Hr1G041790.6 , HORVU1Hr1G041790.8 , HORVU1Hr1G041790.9 , HORVU4Hr1G090030.19 , HORVU3Hr1G026990.17 , HORVU3Hr1G026990.11 , HORVU5Hr1G061410.33 , HORVU5Hr1G061410.32 , HORVU5Hr1G061410.31 , HORVU5Hr1G061410.30 , HORVU3Hr1G026990.6
Wheat TraesCS3A02G312800 , TraesCS3A02G312800 , TraesCS1A02G157500 , TraesCS3D02G141500 , TraesCS3D02G141500 , TraesCS3B02G159100 , TraesCS1D02G155200 , TraesCS1D02G155200 , TraesCS1D02G155200 , TraesCS4B02G385200 , TraesCS4D02G359600 , TraesCS5A02G549700 , TraesCS5A02G549700 , TraesCS3B02G159100 , TraesCS1B02G173900
Populus PNS92629 , PNS92626 , PNS92627 , PNS92628 , PNT18995 , PNT18994 , PNT18996 , PNT33396 , PNT33397 , PNT18993


JBrowse

Open New Page


cDNA sequences
Sobic.001G217200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G063001 - -
2 Sobic.001G371700 zinc finger protein, putative, expressed -
3 Sobic.007G203000 RNA pseudouridine synthase, putative, expressed -
4 Sobic.002G377300 CAMK_CAMK_like.35 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
5 Sobic.004G178400 zinc finger, C3HC4 type domain containing protein, expressed K19039: E3 ubiquitin-protein ligase ATL7/58/59
6 Sobic.009G083300 white-brown complex homolog protein 12, putative, expressed -
7 Sobic.004G255800 AGC_PVPK_like_kin82y.7 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
8 Sobic.002G272400 expressed protein -
9 Sobic.003G071600 3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed K10258: TER, TSC13, very-long-chain enoyl-CoA reductase
10 Sobic.007G013000 transferase family protein, putative, expressed -
11 Sobic.007G225800 NOL1/NOP2/sun family protein, putative, expressed K15335: NSUN2, tRNA (cytosine34-C5)-methyltransferase
12 Sobic.001G384800 expressed protein -
13 Sobic.008G008500 protein phosphatase 2c, putative, expressed -
14 Sobic.003G210900 protein kinase, putative, expressed -
15 Sobic.001G315400 expressed protein -
16 Sobic.001G296400 palmitoyl-protein thioesterase 1 precursor, putative, expressed K01074: palmitoyl-protein thioesterase
17 Sobic.006G085300 Regulator of chromosome condensation domain containing protein, expressed -
18 Sobic.002G246000 expressed protein -
19 Sobic.006G155700 ABC transporter(PubMedID : 23463491)@white-brown complex homolog protein 11, putative, expressed -
20 Sobic.001G195800 aquaporin protein, putative, expressed K09874: aquaporin NIP


Gene co-expression network
sample Sobic001G217200 Sobic001G217200 Sobic006G063001 Sobic006G063001 Sobic001G217200--Sobic006G063001 Sobic001G371700 Sobic001G371700 Sobic001G217200--Sobic001G371700 Sobic007G203000 Sobic007G203000 Sobic001G217200--Sobic007G203000 Sobic002G377300 Sobic002G377300 Sobic001G217200--Sobic002G377300 Sobic004G178400 Sobic004G178400 Sobic001G217200--Sobic004G178400 Sobic009G083300 Sobic009G083300 Sobic001G217200--Sobic009G083300 Sobic004G255800 Sobic004G255800 Sobic001G217200--Sobic004G255800 Sobic002G272400 Sobic002G272400 Sobic001G217200--Sobic002G272400 Sobic003G071600 Sobic003G071600 Sobic001G217200--Sobic003G071600 Sobic007G225800 Sobic007G225800 Sobic006G063001--Sobic007G225800 Sobic008G092532 Sobic008G092532 Sobic006G063001--Sobic008G092532 Sobic004G135900 Sobic004G135900 Sobic006G063001--Sobic004G135900 Sobic001G172200 Sobic001G172200 Sobic006G063001--Sobic001G172200 Sobic010G172000 Sobic010G172000 Sobic006G063001--Sobic010G172000 Sobic003G142000 Sobic003G142000 Sobic006G063001--Sobic003G142000 Sobic002G424900 Sobic002G424900 Sobic006G063001--Sobic002G424900 Sobic001G258900 Sobic001G258900 Sobic006G063001--Sobic001G258900 Sobic002G162500 Sobic002G162500 Sobic006G063001--Sobic002G162500 Sobic001G371700--Sobic002G377300 Sobic004G118800 Sobic004G118800 Sobic001G371700--Sobic004G118800 Sobic003G078300 Sobic003G078300 Sobic001G371700--Sobic003G078300 Sobic008G101900 Sobic008G101900 Sobic001G371700--Sobic008G101900 Sobic006G257200 Sobic006G257200 Sobic001G371700--Sobic006G257200 Sobic001G047200 Sobic001G047200 Sobic001G371700--Sobic001G047200 Sobic001G371700--Sobic002G272400 Sobic002G311000 Sobic002G311000 Sobic001G371700--Sobic002G311000 Sobic003G223000 Sobic003G223000 Sobic001G371700--Sobic003G223000 Sobic004G203500 Sobic004G203500 Sobic007G203000--Sobic004G203500 Sobic009G231100 Sobic009G231100 Sobic007G203000--Sobic009G231100 Sobic007G203000--Sobic001G371700 Sobic007G203000--Sobic001G217200 Sobic005G031000 Sobic005G031000 Sobic007G203000--Sobic005G031000 Sobic001G361300 Sobic001G361300 Sobic007G203000--Sobic001G361300 Sobic010G059200 Sobic010G059200 Sobic007G203000--Sobic010G059200 Sobic003G165800 Sobic003G165800 Sobic007G203000--Sobic003G165800 Sobic008G125100 Sobic008G125100 Sobic007G203000--Sobic008G125100 Sobic009G055900 Sobic009G055900 Sobic002G377300--Sobic009G055900 Sobic002G377300--Sobic001G371700 Sobic010G165100 Sobic010G165100 Sobic002G377300--Sobic010G165100 Sobic002G142500 Sobic002G142500 Sobic002G377300--Sobic002G142500 Sobic002G377300--Sobic009G231100 Sobic002G377300--Sobic001G047200 Sobic008G143600 Sobic008G143600 Sobic002G377300--Sobic008G143600 Sobic002G225000 Sobic002G225000 Sobic002G377300--Sobic002G225000 Sobic002G246000 Sobic002G246000 Sobic002G377300--Sobic002G246000 Sobic006G140600 Sobic006G140600 Sobic004G178400--Sobic006G140600 Sobic004G128200 Sobic004G128200 Sobic004G178400--Sobic004G128200 Sobic004G178400--Sobic008G125100 Sobic003G077500 Sobic003G077500 Sobic004G178400--Sobic003G077500 Sobic008G088842 Sobic008G088842 Sobic004G178400--Sobic008G088842 Sobic002G143200 Sobic002G143200 Sobic004G178400--Sobic002G143200 Sobic003G023400 Sobic003G023400 Sobic004G178400--Sobic003G023400 Sobic001G253200 Sobic001G253200 Sobic004G178400--Sobic001G253200 Sobic008G190500 Sobic008G190500 Sobic004G178400--Sobic008G190500 Sobic003G069200 Sobic003G069200 Sobic009G083300--Sobic003G069200 Sobic008G008500 Sobic008G008500 Sobic009G083300--Sobic008G008500 Sobic006G155700 Sobic006G155700 Sobic009G083300--Sobic006G155700 Sobic004G015700 Sobic004G015700 Sobic009G083300--Sobic004G015700 Sobic002G064400 Sobic002G064400 Sobic009G083300--Sobic002G064400 Sobic005G084000 Sobic005G084000 Sobic009G083300--Sobic005G084000 Sobic009G083300--Sobic003G071600 Sobic001G142400 Sobic001G142400 Sobic009G083300--Sobic001G142400 Sobic001G099000 Sobic001G099000 Sobic009G083300--Sobic001G099000 Sobic002G098500 Sobic002G098500 Sobic004G255800--Sobic002G098500 Sobic006G167300 Sobic006G167300 Sobic004G255800--Sobic006G167300 Sobic007G065300 Sobic007G065300 Sobic004G255800--Sobic007G065300 Sobic010G135300 Sobic010G135300 Sobic004G255800--Sobic010G135300 Sobic008G038200 Sobic008G038200 Sobic004G255800--Sobic008G038200 Sobic003G096300 Sobic003G096300 Sobic004G255800--Sobic003G096300 Sobic004G255800--Sobic002G143200 Sobic002G002100 Sobic002G002100 Sobic004G255800--Sobic002G002100 Sobic001G217100 Sobic001G217100 Sobic004G255800--Sobic001G217100 Sobic002G141900 Sobic002G141900 Sobic002G272400--Sobic002G141900 Sobic001G013900 Sobic001G013900 Sobic002G272400--Sobic001G013900 Sobic002G272400--Sobic008G101900 Sobic002G272400--Sobic003G223000 Sobic008G058000 Sobic008G058000 Sobic002G272400--Sobic008G058000 Sobic002G272400--Sobic001G371700 Sobic004G119400 Sobic004G119400 Sobic002G272400--Sobic004G119400 Sobic001G315400 Sobic001G315400 Sobic002G272400--Sobic001G315400 Sobic010G157700 Sobic010G157700 Sobic002G272400--Sobic010G157700 Sobic001G296400 Sobic001G296400 Sobic003G071600--Sobic001G296400 Sobic003G071600--Sobic009G083300 Sobic003G071600--Sobic002G064400 Sobic003G071600--Sobic008G008500 Sobic003G265500 Sobic003G265500 Sobic003G071600--Sobic003G265500 Sobic004G208600 Sobic004G208600 Sobic003G071600--Sobic004G208600 Sobic003G071600--Sobic005G084000 Sobic001G543700 Sobic001G543700 Sobic003G071600--Sobic001G543700 Sobic003G071600--Sobic004G015700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.