Gene annotation
Transcriptome id Sobic.001G352700.2
Synonym
Functional annotation VQ domain containing protein, putative, expressed
UniProt A0A1Z5S9T9
Pfam PF05678
Panther DB PTHR33179 PTHR33179:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G39720 : VQ motif-containing protein
RAP-DB (Rice) LOC_Os03g26990.1 : VQ domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a031020 , Zm00025a052086 , Zm00025a019105 , Zm00025a013820 , Zm00025a046724
Brachypodium KQJ93567 , KQJ90035 , KQJ98225 , KQK21459
Barley HORVU5Hr1G058170.1 , HORVU3Hr1G003880.1 , HORVU3Hr1G003880.2
Wheat TraesCS3D02G036600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G271500 expressed protein -
2 Sobic.007G131700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
3 Sobic.003G252300 universal stress protein domain containing protein, putative, expressed -
4 Sobic.006G115300 amino acid transporter, putative, expressed -
5 Sobic.008G190900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thioesterase family protein, putative, expressed -
6 Sobic.004G236550 - -
7 Sobic.009G136100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@auxin-induced protein 5NG4, putative, expressed -
8 Sobic.002G055400 Putative uncharacterized protein(PubMedID : 24655390)@ Oryza sativa Indica Group(PubMedID : 27586543)@plant-specific domain TIGR01615 family protein, expressed -
9 Sobic.003G252400 drought induced 19 protein, putative, expressed -
10 Sobic.009G200300 expressed protein -
11 Sobic.010G162900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@reticuline oxidase-like protein precursor, putative, expressed -
12 Sobic.007G225900 OsWAK13 - OsWAK receptor-like protein kinase, expressed -
13 Sobic.004G162400 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
14 Sobic.005G016800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CRP11 - Cysteine-rich family protein precursor, expressed -
15 Sobic.001G521500 callose synthase-like enzyme(PubMedID : 25311645)@1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
16 Sobic.009G097300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.23 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
17 Sobic.008G189200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
18 Sobic.002G274800 "senescence-inducible chloroplast stay-green protein, GenBank annotation:AY850140"(PubMedID : 17513504)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@senescence-inducible chloroplast stay-green protein 1, putative, expressed -
19 Sobic.006G258800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
20 Sobic.001G235500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -


Gene co-expression network
sample Sobic001G352700 Sobic001G352700 Sobic001G271500 Sobic001G271500 Sobic001G352700--Sobic001G271500 Sobic007G131700 Sobic007G131700 Sobic001G352700--Sobic007G131700 Sobic003G252300 Sobic003G252300 Sobic001G352700--Sobic003G252300 Sobic006G115300 Sobic006G115300 Sobic001G352700--Sobic006G115300 Sobic008G190900 Sobic008G190900 Sobic001G352700--Sobic008G190900 Sobic004G236550 Sobic004G236550 Sobic001G352700--Sobic004G236550 Sobic009G136100 Sobic009G136100 Sobic001G352700--Sobic009G136100 Sobic002G055400 Sobic002G055400 Sobic001G352700--Sobic002G055400 Sobic003G252400 Sobic003G252400 Sobic001G352700--Sobic003G252400 Sobic001G271500--Sobic001G352700 Sobic001G271500--Sobic007G131700 Sobic001G271500--Sobic006G115300 Sobic003G137900 Sobic003G137900 Sobic001G271500--Sobic003G137900 Sobic001G271500--Sobic003G252300 Sobic009G097300 Sobic009G097300 Sobic001G271500--Sobic009G097300 Sobic001G271500--Sobic004G236550 Sobic004G219700 Sobic004G219700 Sobic001G271500--Sobic004G219700 Sobic006G086100 Sobic006G086100 Sobic001G271500--Sobic006G086100 Sobic007G131700--Sobic003G252400 Sobic007G131700--Sobic006G115300 Sobic002G110200 Sobic002G110200 Sobic007G131700--Sobic002G110200 Sobic003G229000 Sobic003G229000 Sobic007G131700--Sobic003G229000 Sobic002G189000 Sobic002G189000 Sobic007G131700--Sobic002G189000 Sobic007G025800 Sobic007G025800 Sobic007G131700--Sobic007G025800 Sobic010G260300 Sobic010G260300 Sobic007G131700--Sobic010G260300 Sobic002G013900 Sobic002G013900 Sobic007G131700--Sobic002G013900 Sobic002G331450 Sobic002G331450 Sobic007G131700--Sobic002G331450 Sobic002G274800 Sobic002G274800 Sobic003G252300--Sobic002G274800 Sobic005G216000 Sobic005G216000 Sobic003G252300--Sobic005G216000 Sobic003G105800 Sobic003G105800 Sobic003G252300--Sobic003G105800 Sobic003G252300--Sobic006G115300 Sobic003G252300--Sobic008G190900 Sobic004G162400 Sobic004G162400 Sobic003G252300--Sobic004G162400 Sobic008G189200 Sobic008G189200 Sobic003G252300--Sobic008G189200 Sobic007G225900 Sobic007G225900 Sobic003G252300--Sobic007G225900 Sobic001G092000 Sobic001G092000 Sobic003G252300--Sobic001G092000 Sobic009G118600 Sobic009G118600 Sobic006G115300--Sobic009G118600 Sobic006G115300--Sobic007G131700 Sobic006G115300--Sobic003G252400 Sobic001G235500 Sobic001G235500 Sobic006G115300--Sobic001G235500 Sobic006G115300--Sobic003G252300 Sobic006G115300--Sobic004G236550 Sobic003G272400 Sobic003G272400 Sobic006G115300--Sobic003G272400 Sobic001G521500 Sobic001G521500 Sobic006G115300--Sobic001G521500 Sobic003G126300 Sobic003G126300 Sobic006G115300--Sobic003G126300 Sobic008G190900--Sobic008G189200 Sobic008G190900--Sobic003G105800 Sobic008G190900--Sobic003G252300 Sobic008G190900--Sobic002G274800 Sobic008G190900--Sobic006G086100 Sobic008G190900--Sobic004G162400 Sobic002G172900 Sobic002G172900 Sobic008G190900--Sobic002G172900 Sobic009G126900 Sobic009G126900 Sobic008G190900--Sobic009G126900 Sobic008G190900--Sobic007G225900 Sobic009G079300 Sobic009G079300 Sobic004G236550--Sobic009G079300 Sobic002G355200 Sobic002G355200 Sobic004G236550--Sobic002G355200 Sobic004G236550--Sobic009G136100 Sobic003G332000 Sobic003G332000 Sobic004G236550--Sobic003G332000 Sobic004G236550--Sobic006G086100 Sobic005G016800 Sobic005G016800 Sobic004G236550--Sobic005G016800 Sobic004G236550--Sobic009G118600 Sobic004G236550--Sobic006G115300 Sobic002G225300 Sobic002G225300 Sobic004G236550--Sobic002G225300 Sobic009G136100--Sobic001G235500 Sobic009G136100--Sobic009G118600 Sobic009G136100--Sobic004G236550 Sobic009G136100--Sobic009G079300 Sobic009G136100--Sobic003G252400 Sobic009G200300 Sobic009G200300 Sobic009G136100--Sobic009G200300 Sobic001G005700 Sobic001G005700 Sobic009G136100--Sobic001G005700 Sobic004G211301 Sobic004G211301 Sobic009G136100--Sobic004G211301 Sobic009G136100--Sobic006G115300 Sobic002G055400--Sobic007G131700 Sobic002G055400--Sobic001G271500 Sobic002G055400--Sobic006G115300 Sobic010G245900 Sobic010G245900 Sobic002G055400--Sobic010G245900 Sobic002G055400--Sobic003G137900 Sobic002G055400--Sobic009G097300 Sobic008G091614 Sobic008G091614 Sobic002G055400--Sobic008G091614 Sobic002G055400--Sobic004G219700 Sobic010G124800 Sobic010G124800 Sobic002G055400--Sobic010G124800 Sobic003G252400--Sobic002G331450 Sobic003G252400--Sobic004G211301 Sobic003G397500 Sobic003G397500 Sobic003G252400--Sobic003G397500 Sobic003G252400--Sobic002G110200 Sobic010G085400 Sobic010G085400 Sobic003G252400--Sobic010G085400 Sobic005G060600 Sobic005G060600 Sobic003G252400--Sobic005G060600 Sobic003G252400--Sobic002G013900 Sobic002G325600 Sobic002G325600 Sobic003G252400--Sobic002G325600 Sobic003G252400--Sobic007G131700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.