Gene annotation
Transcriptome id Sobic.001G357600.1
Synonym Sb01g034160
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
amino acid permease family protein, putative, expressed
UniProt C5WYM8
Pfam PF13520
Panther DB PTHR11785 PTHR11785:SF378
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0015171amino acid transmembrane transporter activity GO:0003333amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT3G13620 : Amino acid permease family protein
RAP-DB (Rice) LOC_Os03g25920.1 : amino acid permease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a002653
Brachypodium KQK21520
Barley HORVU7Hr1G106710.9 , HORVU7Hr1G106710.2
Wheat TraesCS7B02G365600 , TraesCS7A02G464900 , TraesCS5B02G533500 , TraesCS7D02G452600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G003200 Fatty acid desaturase 8 (omega-3 fatty acid desaturase) FAD8 (Os)(PubMedID : 27208977)@fatty acid desaturase, putative, expressed K10257: FAD3, FAD7, FAD8, acyl-lipid omega-3 desaturase
2 Sobic.004G227550 - -
3 Sobic.004G227550 - -
4 Sobic.003G029000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@lecithin:cholesterol acyltransferase, putative, expressed K06129: lysophospholipase III
5 Sobic.001G328650 - -
6 Sobic.002G286150 - -
7 Sobic.001G287000 expressed protein -
8 Sobic.009G107600 inhibitor I family protein, putative, expressed -
9 Sobic.008G179200 Na/Ca exchanger(PubMedID : 22196357)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@sodium/calcium exchanger protein, putative, expressed K13754: SLC24A6, solute carrier family 24 (sodium/potassium/calcium exchanger), member 6
10 Sobic.008G053900 citrate-binding protein precursor, putative, expressed -
11 Sobic.001G306600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@red chlorophyll catabolite reductase, putative, expressed K13545: RCCR, red chlorophyll catabolite reductase
12 Sobic.006G225700 expressed protein -
13 Sobic.008G015600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CAMK_CAMK_like.42 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
14 Sobic.003G422600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid permease family protein, putative, expressed -
15 Sobic.009G044501 - -
16 Sobic.010G136950 - -
17 Sobic.003G076800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AP2/B3 transcription factor(PubMedID : 27016024)@cytochrome P450, putative, expressed -
18 Sobic.009G152180 - -
19 Sobic.009G055500 - -
20 Sobic.003G411300 expressed protein -


Gene co-expression network
sample Sobic001G357600 Sobic001G357600 Sobic008G003200 Sobic008G003200 Sobic001G357600--Sobic008G003200 Sobic004G227550 Sobic004G227550 Sobic001G357600--Sobic004G227550 Sobic003G029000 Sobic003G029000 Sobic001G357600--Sobic003G029000 Sobic001G328650 Sobic001G328650 Sobic001G357600--Sobic001G328650 Sobic002G286150 Sobic002G286150 Sobic001G357600--Sobic002G286150 Sobic001G287000 Sobic001G287000 Sobic001G357600--Sobic001G287000 Sobic009G107600 Sobic009G107600 Sobic001G357600--Sobic009G107600 Sobic008G179200 Sobic008G179200 Sobic001G357600--Sobic008G179200 Sobic008G003200--Sobic001G357600 Sobic008G015600 Sobic008G015600 Sobic008G003200--Sobic008G015600 Sobic005G139225 Sobic005G139225 Sobic008G003200--Sobic005G139225 Sobic008G003200--Sobic004G227550 Sobic007G104600 Sobic007G104600 Sobic008G003200--Sobic007G104600 SobicK030700 SobicK030700 Sobic008G003200--SobicK030700 Sobic003G280500 Sobic003G280500 Sobic008G003200--Sobic003G280500 Sobic002G265300 Sobic002G265300 Sobic008G003200--Sobic002G265300 Sobic004G227550--Sobic004G227550 Sobic008G053900 Sobic008G053900 Sobic004G227550--Sobic008G053900 Sobic006G225700 Sobic006G225700 Sobic004G227550--Sobic006G225700 Sobic004G227550--Sobic009G107600 Sobic009G152180 Sobic009G152180 Sobic004G227550--Sobic009G152180 Sobic007G201600 Sobic007G201600 Sobic004G227550--Sobic007G201600 Sobic007G094050 Sobic007G094050 Sobic004G227550--Sobic007G094050 Sobic002G084600 Sobic002G084600 Sobic004G227550--Sobic002G084600 Sobic009G058200 Sobic009G058200 Sobic004G227550--Sobic009G058200 Sobic004G333200 Sobic004G333200 Sobic003G029000--Sobic004G333200 Sobic005G178100 Sobic005G178100 Sobic003G029000--Sobic005G178100 Sobic002G420700 Sobic002G420700 Sobic003G029000--Sobic002G420700 Sobic007G093000 Sobic007G093000 Sobic003G029000--Sobic007G093000 Sobic003G111300 Sobic003G111300 Sobic003G029000--Sobic003G111300 Sobic007G092900 Sobic007G092900 Sobic003G029000--Sobic007G092900 Sobic004G320600 Sobic004G320600 Sobic003G029000--Sobic004G320600 Sobic009G114000 Sobic009G114000 Sobic003G029000--Sobic009G114000 Sobic003G111200 Sobic003G111200 Sobic003G029000--Sobic003G111200 Sobic006G099650 Sobic006G099650 Sobic001G328650--Sobic006G099650 Sobic006G050050 Sobic006G050050 Sobic001G328650--Sobic006G050050 Sobic010G044800 Sobic010G044800 Sobic001G328650--Sobic010G044800 Sobic003G411300 Sobic003G411300 Sobic001G328650--Sobic003G411300 Sobic010G177900 Sobic010G177900 Sobic001G328650--Sobic010G177900 Sobic008G010000 Sobic008G010000 Sobic001G328650--Sobic008G010000 Sobic010G136950 Sobic010G136950 Sobic001G328650--Sobic010G136950 Sobic005G038800 Sobic005G038800 Sobic001G328650--Sobic005G038800 Sobic001G505600 Sobic001G505600 Sobic001G328650--Sobic001G505600 Sobic009G044501 Sobic009G044501 Sobic002G286150--Sobic009G044501 Sobic008G012500 Sobic008G012500 Sobic002G286150--Sobic008G012500 Sobic006G130900 Sobic006G130900 Sobic002G286150--Sobic006G130900 Sobic003G444700 Sobic003G444700 Sobic002G286150--Sobic003G444700 Sobic004G240700 Sobic004G240700 Sobic002G286150--Sobic004G240700 Sobic001G120800 Sobic001G120800 Sobic002G286150--Sobic001G120800 Sobic010G257900 Sobic010G257900 Sobic002G286150--Sobic010G257900 Sobic010G056900 Sobic010G056900 Sobic002G286150--Sobic010G056900 Sobic003G131900 Sobic003G131900 Sobic002G286150--Sobic003G131900 Sobic002G057400 Sobic002G057400 Sobic001G287000--Sobic002G057400 Sobic001G270700 Sobic001G270700 Sobic001G287000--Sobic001G270700 Sobic003G141600 Sobic003G141600 Sobic001G287000--Sobic003G141600 Sobic003G402800 Sobic003G402800 Sobic001G287000--Sobic003G402800 Sobic001G287000--Sobic003G411300 Sobic002G406300 Sobic002G406300 Sobic001G287000--Sobic002G406300 Sobic002G007800 Sobic002G007800 Sobic001G287000--Sobic002G007800 Sobic003G385300 Sobic003G385300 Sobic001G287000--Sobic003G385300 Sobic009G252300 Sobic009G252300 Sobic001G287000--Sobic009G252300 Sobic009G107600--Sobic004G227550 Sobic009G107600--Sobic008G053900 Sobic009G107600--Sobic002G084600 Sobic009G107600--Sobic006G225700 Sobic009G107600--Sobic003G111200 Sobic007G163901 Sobic007G163901 Sobic009G107600--Sobic007G163901 Sobic009G107600--Sobic009G058200 Sobic009G107600--Sobic007G201600 Sobic006G115300 Sobic006G115300 Sobic008G179200--Sobic006G115300 Sobic008G190900 Sobic008G190900 Sobic008G179200--Sobic008G190900 Sobic006G086100 Sobic006G086100 Sobic008G179200--Sobic006G086100 Sobic003G252300 Sobic003G252300 Sobic008G179200--Sobic003G252300 Sobic009G118600 Sobic009G118600 Sobic008G179200--Sobic009G118600 Sobic001G271500 Sobic001G271500 Sobic008G179200--Sobic001G271500 Sobic007G035000 Sobic007G035000 Sobic008G179200--Sobic007G035000 Sobic010G093100 Sobic010G093100 Sobic008G179200--Sobic010G093100 Sobic007G131700 Sobic007G131700 Sobic008G179200--Sobic007G131700
Octagon: transcription factors


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