Gene annotation
Transcriptome id Sobic.008G179200.1
Synonym Sb08g022240, CAX7,
Functional annotation Na/Ca exchanger (PubMedID : 22196357)
"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
sodium/calcium exchanger protein, putative, expressed
UniProt C5YSH5
Pfam PF01699
Panther DB PTHR12266 PTHR12266:SF6
NCBI CDD KOG2399; K+-dependent Na+:Ca2+ antiporter
KEGG Orthology K13754; SLC24A6, solute carrier family 24 (sodium/potassium/calcium exchanger), member 6
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G17860 : calcium exchanger 7
RAP-DB (Rice) LOC_Os03g45370.1 : sodium/calcium exchanger protein, putative, expressed
MaizeGDB (Corn) Zm00025a007553 , Zm00025a004769
Brachypodium KQK21666
Barley HORVU5Hr1G006550.1 , HORVU5Hr1G006360.1 , HORVU5Hr1G006360.2 , HORVU5Hr1G006360.3 , HORVU0Hr1G009900.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G115300 amino acid transporter, putative, expressed -
2 Sobic.008G190900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thioesterase family protein, putative, expressed -
3 Sobic.006G086100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
4 Sobic.003G252300 universal stress protein domain containing protein, putative, expressed -
5 Sobic.009G118600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@eukaryotic peptide chain release factor subunit 1-1, putative, expressed K03265: ETF1, peptide chain release factor subunit 1
6 Sobic.001G271500 expressed protein -
7 Sobic.007G035000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@decarboxylase, putative, expressed K01592: tyrosine decarboxylase
8 Sobic.010G093100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@galactosyltransferase family protein, putative, expressed K14413: beta-1,3-galactosyltransferase
9 Sobic.007G131700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
10 Sobic.005G216000 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
11 Sobic.004G162400 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
12 Sobic.005G046250 - -
13 Sobic.002G274800 "senescence-inducible chloroplast stay-green protein, GenBank annotation:AY850140"(PubMedID : 17513504)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@senescence-inducible chloroplast stay-green protein 1, putative, expressed -
14 Sobic.003G269800 phosphatidylinositol transfer, putative, expressed -
15 Sobic.008G189200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
16 Sobic.001G235500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
17 Sobic.003G105800 No apical meristem protein, putative, expressed -
18 Sobic.001G413900 "Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
19 Sobic.009G213000 protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
20 Sobic.009G136100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@auxin-induced protein 5NG4, putative, expressed -


Gene co-expression network
sample Sobic008G179200 Sobic008G179200 Sobic006G115300 Sobic006G115300 Sobic008G179200--Sobic006G115300 Sobic008G190900 Sobic008G190900 Sobic008G179200--Sobic008G190900 Sobic006G086100 Sobic006G086100 Sobic008G179200--Sobic006G086100 Sobic003G252300 Sobic003G252300 Sobic008G179200--Sobic003G252300 Sobic009G118600 Sobic009G118600 Sobic008G179200--Sobic009G118600 Sobic001G271500 Sobic001G271500 Sobic008G179200--Sobic001G271500 Sobic007G035000 Sobic007G035000 Sobic008G179200--Sobic007G035000 Sobic010G093100 Sobic010G093100 Sobic008G179200--Sobic010G093100 Sobic007G131700 Sobic007G131700 Sobic008G179200--Sobic007G131700 Sobic006G115300--Sobic009G118600 Sobic006G115300--Sobic007G131700 Sobic003G252400 Sobic003G252400 Sobic006G115300--Sobic003G252400 Sobic001G235500 Sobic001G235500 Sobic006G115300--Sobic001G235500 Sobic006G115300--Sobic003G252300 Sobic004G236550 Sobic004G236550 Sobic006G115300--Sobic004G236550 Sobic003G272400 Sobic003G272400 Sobic006G115300--Sobic003G272400 Sobic001G521500 Sobic001G521500 Sobic006G115300--Sobic001G521500 Sobic003G126300 Sobic003G126300 Sobic006G115300--Sobic003G126300 Sobic008G189200 Sobic008G189200 Sobic008G190900--Sobic008G189200 Sobic003G105800 Sobic003G105800 Sobic008G190900--Sobic003G105800 Sobic008G190900--Sobic003G252300 Sobic002G274800 Sobic002G274800 Sobic008G190900--Sobic002G274800 Sobic008G190900--Sobic006G086100 Sobic004G162400 Sobic004G162400 Sobic008G190900--Sobic004G162400 Sobic002G172900 Sobic002G172900 Sobic008G190900--Sobic002G172900 Sobic009G126900 Sobic009G126900 Sobic008G190900--Sobic009G126900 Sobic007G225900 Sobic007G225900 Sobic008G190900--Sobic007G225900 Sobic003G000600 Sobic003G000600 Sobic006G086100--Sobic003G000600 Sobic006G086100--Sobic004G236550 Sobic006G086100--Sobic009G118600 Sobic008G144500 Sobic008G144500 Sobic006G086100--Sobic008G144500 Sobic006G086100--Sobic008G190900 Sobic006G086100--Sobic001G235500 Sobic006G086100--Sobic006G115300 Sobic003G281900 Sobic003G281900 Sobic006G086100--Sobic003G281900 Sobic009G236300 Sobic009G236300 Sobic006G086100--Sobic009G236300 Sobic003G252300--Sobic002G274800 Sobic005G216000 Sobic005G216000 Sobic003G252300--Sobic005G216000 Sobic003G252300--Sobic003G105800 Sobic003G252300--Sobic006G115300 Sobic003G252300--Sobic008G190900 Sobic003G252300--Sobic004G162400 Sobic003G252300--Sobic008G189200 Sobic003G252300--Sobic007G225900 Sobic001G092000 Sobic001G092000 Sobic003G252300--Sobic001G092000 Sobic009G118600--Sobic001G235500 Sobic009G118600--Sobic006G115300 Sobic003G269800 Sobic003G269800 Sobic009G118600--Sobic003G269800 Sobic009G136100 Sobic009G136100 Sobic009G118600--Sobic009G136100 Sobic009G118600--Sobic006G086100 Sobic009G118600--Sobic004G236550 Sobic005G215766 Sobic005G215766 Sobic009G118600--Sobic005G215766 Sobic009G097300 Sobic009G097300 Sobic009G118600--Sobic009G097300 Sobic003G332000 Sobic003G332000 Sobic009G118600--Sobic003G332000 Sobic001G352700 Sobic001G352700 Sobic001G271500--Sobic001G352700 Sobic001G271500--Sobic007G131700 Sobic001G271500--Sobic006G115300 Sobic003G137900 Sobic003G137900 Sobic001G271500--Sobic003G137900 Sobic001G271500--Sobic003G252300 Sobic001G271500--Sobic009G097300 Sobic001G271500--Sobic004G236550 Sobic004G219700 Sobic004G219700 Sobic001G271500--Sobic004G219700 Sobic001G271500--Sobic006G086100 Sobic002G420700 Sobic002G420700 Sobic007G035000--Sobic002G420700 Sobic007G035000--Sobic005G216000 Sobic005G178100 Sobic005G178100 Sobic007G035000--Sobic005G178100 Sobic007G035000--Sobic003G105800 Sobic003G087200 Sobic003G087200 Sobic007G035000--Sobic003G087200 Sobic004G071200 Sobic004G071200 Sobic007G035000--Sobic004G071200 Sobic003G244600 Sobic003G244600 Sobic007G035000--Sobic003G244600 Sobic009G114000 Sobic009G114000 Sobic007G035000--Sobic009G114000 Sobic009G034700 Sobic009G034700 Sobic007G035000--Sobic009G034700 Sobic002G031100 Sobic002G031100 Sobic010G093100--Sobic002G031100 Sobic001G001400 Sobic001G001400 Sobic010G093100--Sobic001G001400 Sobic007G196900 Sobic007G196900 Sobic010G093100--Sobic007G196900 Sobic004G002100 Sobic004G002100 Sobic010G093100--Sobic004G002100 Sobic001G127200 Sobic001G127200 Sobic010G093100--Sobic001G127200 Sobic004G314700 Sobic004G314700 Sobic010G093100--Sobic004G314700 Sobic009G020900 Sobic009G020900 Sobic010G093100--Sobic009G020900 Sobic001G415300 Sobic001G415300 Sobic010G093100--Sobic001G415300 Sobic004G358400 Sobic004G358400 Sobic010G093100--Sobic004G358400 Sobic007G131700--Sobic003G252400 Sobic007G131700--Sobic006G115300 Sobic002G110200 Sobic002G110200 Sobic007G131700--Sobic002G110200 Sobic003G229000 Sobic003G229000 Sobic007G131700--Sobic003G229000 Sobic002G189000 Sobic002G189000 Sobic007G131700--Sobic002G189000 Sobic007G025800 Sobic007G025800 Sobic007G131700--Sobic007G025800 Sobic010G260300 Sobic010G260300 Sobic007G131700--Sobic010G260300 Sobic002G013900 Sobic002G013900 Sobic007G131700--Sobic002G013900 Sobic002G331450 Sobic002G331450 Sobic007G131700--Sobic002G331450
Octagon: transcription factors


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