Gene annotation
Transcriptome id Sobic.001G488600.2,Sobic.001G488600.1
Synonym Sb01g045710, KDR
Functional annotation bHLH family protein, putative, expressed
UniProt C5WVX9
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF148 PTHR12565:SF148 PTHR12565
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G47710 : BANQUO 3
RAP-DB (Rice) LOC_Os10g26460.1 : bHLH family protein, putative, expressed
MaizeGDB (Corn) Zm00025a000864
Brachypodium -
Barley HORVU4Hr1G075250.15 , HORVU4Hr1G075250.14 , HORVU4Hr1G075250.13 , HORVU4Hr1G075250.11 , HORVU4Hr1G075250.19 , HORVU4Hr1G075250.18 , HORVU4Hr1G075250.39 , HORVU4Hr1G075250.30 , HORVU4Hr1G075250.33 , HORVU4Hr1G075250.32 , HORVU4Hr1G075250.34 , HORVU4Hr1G075250.37 , HORVU4Hr1G075250.36 , HORVU4Hr1G075250.29 , HORVU4Hr1G075250.25 , HORVU4Hr1G075250.20 , HORVU4Hr1G075250.9 , HORVU4Hr1G075250.8 , HORVU4Hr1G075250.7 , HORVU4Hr1G075250.6 , HORVU4Hr1G075250.5 , HORVU4Hr1G075250.4 , HORVU4Hr1G075250.3 , HORVU4Hr1G075250.2 , HORVU4Hr1G075250.1 , HORVU4Hr1G075250.40 , HORVU4Hr1G075250.41 , HORVU4Hr1G075250.42
Wheat TraesCS4D02G286600 , TraesCS4A02G016300 , TraesCS4B02G287900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G237650 - -
2 Sobic.007G118075 - -
3 Sobic.003G092500 seven in absentia protein family protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
4 Sobic.007G174900 carrier, putative, expressed -
5 Sobic.006G144000 zinc finger, C3HC4 type domain containing protein, expressed -
6 Sobic.008G099500 - -
7 Sobic.001G343000 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
8 Sobic.007G053400 nuclear matrix protein 1, putative, expressed -
9 Sobic.006G215100 expressed protein -
10 Sobic.008G112100 Phospholipid synthesis protein 1 PLS1 (Zm)(PubMedID : 27208977)@acyltransferase, putative, expressed K13523: lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase
11 Sobic.010G028400 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
12 Sobic.006G170700 START domain containing protein, putative, expressed -
13 Sobic.010G073600 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@auxin response factor, putative, expressed -
14 Sobic.003G285700 ATP binding protein, putative, expressed -
15 Sobic.002G241100 glycosyl transferase 8 domain containing protein, putative, expressed -
16 Sobic.003G044700 zinc finger family protein, putative, expressed -
17 Sobic.007G139400 OsFBL33 - F-box domain and LRR containing protein, expressed -
18 Sobic.007G036800 xylosyltransferase, putative, expressed -
19 Sobic.003G092066 - -
20 Sobic.007G201000 methyltransferase domain containing protein, expressed -


Gene co-expression network
sample Sobic001G488600 Sobic001G488600 Sobic010G237650 Sobic010G237650 Sobic001G488600--Sobic010G237650 Sobic007G118075 Sobic007G118075 Sobic001G488600--Sobic007G118075 Sobic003G092500 Sobic003G092500 Sobic001G488600--Sobic003G092500 Sobic007G174900 Sobic007G174900 Sobic001G488600--Sobic007G174900 Sobic006G144000 Sobic006G144000 Sobic001G488600--Sobic006G144000 Sobic008G099500 Sobic008G099500 Sobic001G488600--Sobic008G099500 Sobic001G343000 Sobic001G343000 Sobic001G488600--Sobic001G343000 Sobic007G053400 Sobic007G053400 Sobic001G488600--Sobic007G053400 Sobic006G215100 Sobic006G215100 Sobic001G488600--Sobic006G215100 Sobic002G033600 Sobic002G033600 Sobic010G237650--Sobic002G033600 Sobic003G092066 Sobic003G092066 Sobic010G237650--Sobic003G092066 Sobic002G268900 Sobic002G268900 Sobic010G237650--Sobic002G268900 Sobic010G237650--Sobic006G144000 Sobic007G139400 Sobic007G139400 Sobic010G237650--Sobic007G139400 Sobic010G237650--Sobic006G215100 Sobic010G073600 Sobic010G073600 Sobic010G237650--Sobic010G073600 Sobic005G128000 Sobic005G128000 Sobic010G237650--Sobic005G128000 Sobic009G102000 Sobic009G102000 Sobic010G237650--Sobic009G102000 Sobic007G118050 Sobic007G118050 Sobic007G118075--Sobic007G118050 Sobic002G108100 Sobic002G108100 Sobic007G118075--Sobic002G108100 Sobic005G123400 Sobic005G123400 Sobic007G118075--Sobic005G123400 Sobic001G340900 Sobic001G340900 Sobic007G118075--Sobic001G340900 Sobic006G237500 Sobic006G237500 Sobic007G118075--Sobic006G237500 Sobic004G353300 Sobic004G353300 Sobic007G118075--Sobic004G353300 Sobic001G433600 Sobic001G433600 Sobic007G118075--Sobic001G433600 Sobic007G118075--Sobic010G237650 Sobic002G147200 Sobic002G147200 Sobic007G118075--Sobic002G147200 Sobic003G092500--Sobic003G092066 Sobic003G092500--Sobic007G118050 Sobic003G092500--Sobic010G237650 Sobic002G106200 Sobic002G106200 Sobic003G092500--Sobic002G106200 Sobic003G066700 Sobic003G066700 Sobic003G092500--Sobic003G066700 Sobic003G092500--Sobic007G118075 Sobic006G022500 Sobic006G022500 Sobic003G092500--Sobic006G022500 Sobic007G127950 Sobic007G127950 Sobic003G092500--Sobic007G127950 Sobic006G181500 Sobic006G181500 Sobic003G092500--Sobic006G181500 Sobic006G091000 Sobic006G091000 Sobic007G174900--Sobic006G091000 Sobic003G397100 Sobic003G397100 Sobic007G174900--Sobic003G397100 Sobic007G036800 Sobic007G036800 Sobic007G174900--Sobic007G036800 Sobic002G260700 Sobic002G260700 Sobic007G174900--Sobic002G260700 Sobic004G353400 Sobic004G353400 Sobic007G174900--Sobic004G353400 Sobic004G278900 Sobic004G278900 Sobic007G174900--Sobic004G278900 Sobic007G174900--Sobic007G053400 Sobic002G427800 Sobic002G427800 Sobic007G174900--Sobic002G427800 Sobic004G313300 Sobic004G313300 Sobic007G174900--Sobic004G313300 Sobic001G017200 Sobic001G017200 Sobic006G144000--Sobic001G017200 Sobic009G017200 Sobic009G017200 Sobic006G144000--Sobic009G017200 Sobic009G059400 Sobic009G059400 Sobic006G144000--Sobic009G059400 Sobic006G144000--Sobic010G237650 Sobic004G180900 Sobic004G180900 Sobic006G144000--Sobic004G180900 Sobic004G116600 Sobic004G116600 Sobic006G144000--Sobic004G116600 Sobic006G130200 Sobic006G130200 Sobic006G144000--Sobic006G130200 Sobic006G144000--Sobic004G313300 Sobic001G425000 Sobic001G425000 Sobic006G144000--Sobic001G425000 Sobic008G090300 Sobic008G090300 Sobic008G099500--Sobic008G090300 Sobic005G099150 Sobic005G099150 Sobic008G099500--Sobic005G099150 Sobic008G099500--Sobic006G022500 Sobic008G099500--Sobic005G128000 Sobic004G227500 Sobic004G227500 Sobic008G099500--Sobic004G227500 Sobic004G289500 Sobic004G289500 Sobic008G099500--Sobic004G289500 Sobic002G334600 Sobic002G334600 Sobic008G099500--Sobic002G334600 Sobic001G116100 Sobic001G116100 Sobic008G099500--Sobic001G116100 Sobic006G066000 Sobic006G066000 Sobic008G099500--Sobic006G066000 Sobic007G146600 Sobic007G146600 Sobic001G343000--Sobic007G146600 Sobic003G393200 Sobic003G393200 Sobic001G343000--Sobic003G393200 Sobic007G048700 Sobic007G048700 Sobic001G343000--Sobic007G048700 Sobic002G182000 Sobic002G182000 Sobic001G343000--Sobic002G182000 Sobic007G030100 Sobic007G030100 Sobic001G343000--Sobic007G030100 Sobic010G028400 Sobic010G028400 Sobic001G343000--Sobic010G028400 Sobic002G070300 Sobic002G070300 Sobic001G343000--Sobic002G070300 Sobic008G132200 Sobic008G132200 Sobic001G343000--Sobic008G132200 Sobic001G012900 Sobic001G012900 Sobic001G343000--Sobic001G012900 Sobic007G053400--Sobic006G091000 Sobic007G053400--Sobic001G343000 Sobic003G211700 Sobic003G211700 Sobic007G053400--Sobic003G211700 Sobic007G053400--Sobic004G353400 Sobic010G074900 Sobic010G074900 Sobic007G053400--Sobic010G074900 Sobic010G172400 Sobic010G172400 Sobic007G053400--Sobic010G172400 Sobic007G053400--Sobic007G139400 Sobic007G201000 Sobic007G201000 Sobic007G053400--Sobic007G201000 Sobic009G040800 Sobic009G040800 Sobic007G053400--Sobic009G040800 Sobic006G215100--Sobic010G073600 Sobic004G218300 Sobic004G218300 Sobic006G215100--Sobic004G218300 Sobic006G215100--Sobic010G237650 Sobic006G048300 Sobic006G048300 Sobic006G215100--Sobic006G048300 Sobic003G398400 Sobic003G398400 Sobic006G215100--Sobic003G398400 Sobic006G215100--Sobic006G130200 Sobic002G147100 Sobic002G147100 Sobic006G215100--Sobic002G147100 Sobic003G402900 Sobic003G402900 Sobic006G215100--Sobic003G402900 Sobic006G215100--Sobic010G074900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.