Gene annotation
Transcriptome id Sobic.001G489400.1,Sobic.001G489400.2
Synonym Sb01g045790
Functional annotation 3-dehydroquinate synthase, putative, expressed
UniProt A0A1Z5SB53 , A0A1B6QQ87
Pfam PF01959
Panther DB PTHR33563 PTHR33563:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity GO:0009073aromatic amino acid family biosynthetic process GO:00038563-dehydroquinate synthase activity


Orthologs (automatic annotation)
TAIR AT3G28760 : -
RAP-DB (Rice) LOC_Os03g07420.1 : 3-dehydroquinate synthase, putative, expressed
MaizeGDB (Corn) Zm00025a053336
Brachypodium KQK23411 , KQK23410 , KQK23408 , KQK23409 , PNT78092 , PNT78093 , PNT78090 , PNT78091
Barley HORVU4Hr1G075140.7 , HORVU4Hr1G075140.6 , HORVU4Hr1G075140.5 , HORVU4Hr1G075140.4 , HORVU4Hr1G075140.3 , HORVU4Hr1G075140.2 , HORVU4Hr1G075140.1 , HORVU4Hr1G075140.9 , HORVU4Hr1G075140.8 , HORVU4Hr1G075140.10
Wheat TraesCS4D02G286000 , TraesCS4D02G286000 , TraesCS4B02G287200 , TraesCS4B02G287200 , TraesCS4A02G016900 , TraesCS4A02G016900
Populus -


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cDNA sequences
Sobic.001G489400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G199401 - -
2 Sobic.003G162600 expressed protein -
3 Sobic.004G093800 integral membrane protein, putative, expressed -
4 Sobic.010G229025 - -
5 Sobic.002G421100 KIP1, putative, expressed -
6 Sobic.002G307500 MATH domain containing protein, expressed -
7 Sobic.006G221500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed -
8 Sobic.002G207601 - -
9 Sobic.005G116700 receptor kinase, putative, expressed -
10 Sobic.004G186950 - -
11 Sobic.006G136300 - -
12 Sobic.008G142500 Leucine Rich Repeat family protein, expressed -
13 Sobic.006G192900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein kinase domain containing protein, expressed K04730: interleukin-1 receptor-associated kinase 1
14 Sobic.001G183550 - -
15 Sobic.001G014600 - -
16 Sobic.009G139100 - -
17 Sobic.009G173700 expansin precursor, putative, expressed -
18 Sobic.010G002600 methyltransferase, putative, expressed -
19 Sobic.001G150100 - -
20 Sobic.008G169500 - -


Gene co-expression network
sample Sobic001G489400 Sobic001G489400 Sobic009G199401 Sobic009G199401 Sobic001G489400--Sobic009G199401 Sobic003G162600 Sobic003G162600 Sobic001G489400--Sobic003G162600 Sobic004G093800 Sobic004G093800 Sobic001G489400--Sobic004G093800 Sobic010G229025 Sobic010G229025 Sobic001G489400--Sobic010G229025 Sobic002G421100 Sobic002G421100 Sobic001G489400--Sobic002G421100 Sobic002G307500 Sobic002G307500 Sobic001G489400--Sobic002G307500 Sobic006G221500 Sobic006G221500 Sobic001G489400--Sobic006G221500 Sobic002G207601 Sobic002G207601 Sobic001G489400--Sobic002G207601 Sobic005G116700 Sobic005G116700 Sobic001G489400--Sobic005G116700 Sobic009G199401--Sobic002G421100 Sobic009G199401--Sobic001G489400 Sobic009G199401--Sobic010G229025 Sobic009G199401--Sobic003G162600 Sobic009G199401--Sobic006G221500 Sobic009G199401--Sobic004G093800 Sobic008G142500 Sobic008G142500 Sobic009G199401--Sobic008G142500 Sobic009G199401--Sobic005G116700 Sobic004G186950 Sobic004G186950 Sobic009G199401--Sobic004G186950 Sobic003G162600--Sobic001G489400 Sobic003G162600--Sobic009G199401 Sobic003G162600--Sobic004G186950 Sobic003G162600--Sobic005G116700 Sobic003G162600--Sobic006G221500 Sobic001G150100 Sobic001G150100 Sobic003G162600--Sobic001G150100 Sobic003G162600--Sobic002G421100 Sobic005G187700 Sobic005G187700 Sobic003G162600--Sobic005G187700 Sobic001G014600 Sobic001G014600 Sobic003G162600--Sobic001G014600 Sobic004G093800--Sobic002G307500 Sobic004G093800--Sobic001G489400 Sobic004G093800--Sobic009G199401 Sobic004G173300 Sobic004G173300 Sobic004G093800--Sobic004G173300 Sobic010G002600 Sobic010G002600 Sobic004G093800--Sobic010G002600 Sobic004G093800--Sobic008G142500 Sobic004G093800--Sobic010G229025 Sobic006G192900 Sobic006G192900 Sobic004G093800--Sobic006G192900 Sobic005G131500 Sobic005G131500 Sobic004G093800--Sobic005G131500 Sobic010G229025--Sobic009G199401 Sobic010G229025--Sobic001G489400 Sobic010G229025--Sobic002G421100 Sobic010G229025--Sobic004G093800 Sobic001G183550 Sobic001G183550 Sobic010G229025--Sobic001G183550 Sobic010G229025--Sobic002G307500 Sobic010G229025--Sobic003G162600 Sobic009G025750 Sobic009G025750 Sobic010G229025--Sobic009G025750 Sobic006G083050 Sobic006G083050 Sobic010G229025--Sobic006G083050 Sobic002G421100--Sobic009G199401 Sobic002G421100--Sobic008G142500 Sobic002G421100--Sobic006G083050 Sobic002G421100--Sobic010G229025 Sobic002G421100--Sobic001G489400 Sobic002G421100--Sobic003G162600 Sobic003G068100 Sobic003G068100 Sobic002G421100--Sobic003G068100 Sobic002G421100--Sobic006G221500 Sobic002G421100--Sobic001G014600 Sobic002G307500--Sobic004G093800 Sobic002G307500--Sobic006G192900 Sobic002G307500--Sobic001G489400 Sobic002G307500--Sobic010G229025 Sobic002G307500--Sobic009G199401 Sobic006G235801 Sobic006G235801 Sobic002G307500--Sobic006G235801 Sobic002G307500--Sobic006G221500 Sobic002G307500--Sobic010G002600 Sobic006G136300 Sobic006G136300 Sobic002G307500--Sobic006G136300 Sobic006G221500--Sobic006G136300 Sobic009G173700 Sobic009G173700 Sobic006G221500--Sobic009G173700 Sobic006G221500--Sobic006G235801 Sobic002G046150 Sobic002G046150 Sobic006G221500--Sobic002G046150 Sobic001G052700 Sobic001G052700 Sobic006G221500--Sobic001G052700 Sobic004G267400 Sobic004G267400 Sobic006G221500--Sobic004G267400 Sobic010G089350 Sobic010G089350 Sobic006G221500--Sobic010G089350 Sobic006G221500--Sobic003G162600 Sobic006G221500--Sobic008G142500 Sobic004G257900 Sobic004G257900 Sobic002G207601--Sobic004G257900 Sobic002G207601--Sobic001G489400 Sobic006G213350 Sobic006G213350 Sobic002G207601--Sobic006G213350 Sobic002G197500 Sobic002G197500 Sobic002G207601--Sobic002G197500 Sobic001G156401 Sobic001G156401 Sobic002G207601--Sobic001G156401 Sobic008G143901 Sobic008G143901 Sobic002G207601--Sobic008G143901 Sobic001G139800 Sobic001G139800 Sobic002G207601--Sobic001G139800 Sobic002G207601--Sobic009G199401 Sobic005G160500 Sobic005G160500 Sobic002G207601--Sobic005G160500 Sobic005G116700--Sobic003G162600 Sobic005G116800 Sobic005G116800 Sobic005G116700--Sobic005G116800 Sobic003G068150 Sobic003G068150 Sobic005G116700--Sobic003G068150 Sobic005G116700--Sobic005G187700 Sobic005G116700--Sobic006G083050 Sobic005G116700--Sobic009G199401 Sobic001G527550 Sobic001G527550 Sobic005G116700--Sobic001G527550 Sobic005G116700--Sobic001G489400 Sobic001G180950 Sobic001G180950 Sobic005G116700--Sobic001G180950
Octagon: transcription factors


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