Gene annotation
Transcriptome id Sobic.001G515500.1
Synonym Sb01g048100, LYM2
Functional annotation LYM2 lysm domain GPI-anchored protein 2 precursor( (PubMedID : 26759170,(PubMedID : 24597475)
lysM domain-containing GPI-anchored protein precursor, putative, expressed
UniProt A0A1B6QQP5
Pfam PF01476
Panther DB PTHR33734 PTHR33734:SF1
NCBI CDD -
KEGG Orthology K13473; chitin elicitor-binding protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G17120 : lysm domain GPI-anchored protein 2 precursor
RAP-DB (Rice) LOC_Os03g04110.1 : lysM domain-containing GPI-anchored protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a000469
Brachypodium -
Barley -
Wheat TraesCS5A02G501100 , TraesCS4D02G326400 , TraesCS4D02G326400 , TraesCS4B02G329500 , TraesCS4B02G329500 , TraesCS4B02G329500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G381800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.003G311200 - -
3 Sobic.007G034700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein terpene synthase 6 (Os)(PubMedID : 27208977)@terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
4 Sobic.003G396000 copine, putative, expressed K16280: E3 ubiquitin-protein ligase RGLG
5 Sobic.009G011901 - -
6 Sobic.002G382950 - -
7 Sobic.001G082400 cytochrome P450, putative, expressed -
8 Sobic.001G076000 PHLOEM 2-LIKE A10, putative, expressed -
9 Sobic.001G071100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
10 Sobic.005G118100 STRUBBELIG-RECEPTOR FAMILY 8 precursor, putative, expressed K13436: pto-interacting protein 1
11 Sobic.006G218700 tyrosine protein kinase domain containing protein, putative, expressed -
12 Sobic.006G202500 immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
13 Sobic.006G208800 YT521-B, putative, expressed -
14 Sobic.001G427800 tyrosine protein kinase domain containing protein, putative, expressed -
15 Sobic.004G169966 - -
16 Sobic.010G204100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450 71D7, putative, expressed -
17 Sobic.004G164500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
18 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
19 Sobic.003G311700 cyclase/dehydrase family protein, expressed K18588: coenzyme Q-binding protein COQ10
20 Sobic.002G377000 EF hand family protein, expressed -


Gene co-expression network
sample Sobic001G515500 Sobic001G515500 Sobic001G381800 Sobic001G381800 Sobic001G515500--Sobic001G381800 Sobic003G311200 Sobic003G311200 Sobic001G515500--Sobic003G311200 Sobic007G034700 Sobic007G034700 Sobic001G515500--Sobic007G034700 Sobic003G396000 Sobic003G396000 Sobic001G515500--Sobic003G396000 Sobic009G011901 Sobic009G011901 Sobic001G515500--Sobic009G011901 Sobic002G382950 Sobic002G382950 Sobic001G515500--Sobic002G382950 Sobic001G082400 Sobic001G082400 Sobic001G515500--Sobic001G082400 Sobic001G076000 Sobic001G076000 Sobic001G515500--Sobic001G076000 Sobic001G071100 Sobic001G071100 Sobic001G515500--Sobic001G071100 Sobic001G381800--Sobic001G515500 Sobic006G208800 Sobic006G208800 Sobic001G381800--Sobic006G208800 Sobic001G381800--Sobic001G076000 Sobic006G218700 Sobic006G218700 Sobic001G381800--Sobic006G218700 Sobic009G011700 Sobic009G011700 Sobic001G381800--Sobic009G011700 Sobic001G478300 Sobic001G478300 Sobic001G381800--Sobic001G478300 Sobic006G257900 Sobic006G257900 Sobic001G381800--Sobic006G257900 Sobic004G188300 Sobic004G188300 Sobic001G381800--Sobic004G188300 Sobic001G427800 Sobic001G427800 Sobic001G381800--Sobic001G427800 Sobic004G121000 Sobic004G121000 Sobic003G311200--Sobic004G121000 Sobic003G266700 Sobic003G266700 Sobic003G311200--Sobic003G266700 Sobic004G317600 Sobic004G317600 Sobic003G311200--Sobic004G317600 Sobic008G002600 Sobic008G002600 Sobic003G311200--Sobic008G002600 Sobic010G144000 Sobic010G144000 Sobic003G311200--Sobic010G144000 Sobic003G436900 Sobic003G436900 Sobic003G311200--Sobic003G436900 Sobic008G025900 Sobic008G025900 Sobic003G311200--Sobic008G025900 Sobic002G224450 Sobic002G224450 Sobic003G311200--Sobic002G224450 Sobic005G142200 Sobic005G142200 Sobic003G311200--Sobic005G142200 Sobic001G471900 Sobic001G471900 Sobic007G034700--Sobic001G471900 Sobic002G017300 Sobic002G017300 Sobic007G034700--Sobic002G017300 Sobic010G154150 Sobic010G154150 Sobic007G034700--Sobic010G154150 Sobic009G166700 Sobic009G166700 Sobic007G034700--Sobic009G166700 Sobic007G034700--Sobic001G515500 Sobic004G164500 Sobic004G164500 Sobic007G034700--Sobic004G164500 Sobic008G106800 Sobic008G106800 Sobic007G034700--Sobic008G106800 Sobic004G274700 Sobic004G274700 Sobic007G034700--Sobic004G274700 Sobic001G056700 Sobic001G056700 Sobic007G034700--Sobic001G056700 Sobic001G441600 Sobic001G441600 Sobic003G396000--Sobic001G441600 Sobic003G396000--Sobic006G218700 Sobic003G379700 Sobic003G379700 Sobic003G396000--Sobic003G379700 Sobic010G204300 Sobic010G204300 Sobic003G396000--Sobic010G204300 Sobic003G396000--Sobic001G076000 Sobic003G332401 Sobic003G332401 Sobic003G396000--Sobic003G332401 Sobic004G293700 Sobic004G293700 Sobic003G396000--Sobic004G293700 Sobic003G396000--Sobic001G478300 Sobic009G059700 Sobic009G059700 Sobic003G396000--Sobic009G059700 Sobic009G012000 Sobic009G012000 Sobic009G011901--Sobic009G012000 Sobic002G383000 Sobic002G383000 Sobic009G011901--Sobic002G383000 Sobic006G074400 Sobic006G074400 Sobic009G011901--Sobic006G074400 Sobic003G181400 Sobic003G181400 Sobic009G011901--Sobic003G181400 Sobic009G011901--Sobic002G382950 Sobic005G047800 Sobic005G047800 Sobic009G011901--Sobic005G047800 Sobic005G118100 Sobic005G118100 Sobic009G011901--Sobic005G118100 Sobic009G011901--Sobic003G311200 Sobic009G011901--Sobic003G266700 Sobic002G382950--Sobic002G383000 Sobic002G382950--Sobic009G011901 Sobic010G193400 Sobic010G193400 Sobic002G382950--Sobic010G193400 Sobic002G382950--Sobic009G012000 Sobic003G107400 Sobic003G107400 Sobic002G382950--Sobic003G107400 Sobic002G382950--Sobic006G074400 Sobic002G382950--Sobic001G515500 Sobic002G382950--Sobic008G106800 Sobic002G382950--Sobic005G047800 Sobic001G082400--Sobic001G056700 Sobic001G082400--Sobic001G071100 Sobic006G191600 Sobic006G191600 Sobic001G082400--Sobic006G191600 Sobic002G291300 Sobic002G291300 Sobic001G082400--Sobic002G291300 Sobic002G361001 Sobic002G361001 Sobic001G082400--Sobic002G361001 Sobic002G282400 Sobic002G282400 Sobic001G082400--Sobic002G282400 Sobic007G126100 Sobic007G126100 Sobic001G082400--Sobic007G126100 Sobic001G082400--Sobic004G164500 Sobic001G223100 Sobic001G223100 Sobic001G082400--Sobic001G223100 Sobic001G149700 Sobic001G149700 Sobic001G076000--Sobic001G149700 Sobic001G076000--Sobic001G478300 Sobic008G142700 Sobic008G142700 Sobic001G076000--Sobic008G142700 Sobic001G076000--Sobic003G379700 Sobic001G076000--Sobic001G427800 Sobic001G076000--Sobic001G441600 Sobic010G071200 Sobic010G071200 Sobic001G076000--Sobic010G071200 Sobic001G076000--Sobic006G257900 Sobic003G116700 Sobic003G116700 Sobic001G076000--Sobic003G116700 Sobic010G176600 Sobic010G176600 Sobic001G071100--Sobic010G176600 Sobic001G423800 Sobic001G423800 Sobic001G071100--Sobic001G423800 Sobic001G071100--Sobic002G282400 Sobic001G015100 Sobic001G015100 Sobic001G071100--Sobic001G015100 Sobic002G393000 Sobic002G393000 Sobic001G071100--Sobic002G393000 Sobic002G183200 Sobic002G183200 Sobic001G071100--Sobic002G183200 Sobic004G301000 Sobic004G301000 Sobic001G071100--Sobic004G301000 Sobic001G119400 Sobic001G119400 Sobic001G071100--Sobic001G119400 Sobic004G221500 Sobic004G221500 Sobic001G071100--Sobic004G221500
Octagon: transcription factors


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