Gene annotation
Transcriptome id Sobic.001G381800.2,Sobic.001G381800.1
Synonym Sb01g036210
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5X0U3
Pfam PF11331
Panther DB PTHR31105 PTHR31105:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G56410 : Protein of unknown function (DUF3133)
RAP-DB (Rice) LOC_Os03g21640.1,LOC_Os03g21640.2 : expressed protein
MaizeGDB (Corn) Zm00025a052432 , Zm00025a002340
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G381800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G515500 LYM2 lysm domain GPI-anchored protein 2 precursor("PubMedID : 26759170,PubMedID : 24597475")@lysM domain-containing GPI-anchored protein precursor, putative, expressed K13473: chitin elicitor-binding protein
2 Sobic.006G208800 YT521-B, putative, expressed -
3 Sobic.001G076000 PHLOEM 2-LIKE A10, putative, expressed -
4 Sobic.006G218700 tyrosine protein kinase domain containing protein, putative, expressed -
5 Sobic.009G011700 protein kinase APK1A, chloroplast precursor, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
6 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
7 Sobic.006G257900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
8 Sobic.004G188300 regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS2-11 - C2H2 zinc finger protein, expressed -
9 Sobic.001G427800 tyrosine protein kinase domain containing protein, putative, expressed -
10 Sobic.006G134100 carbonyl reductase 3, putative, expressed -
11 Sobic.006G124000 BTBZ4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed -
12 Sobic.001G441600 potyvirus VPg interacting protein, putative, expressed -
13 Sobic.001G290200 leucine rich repeat containing protein, expressed -
14 Sobic.005G167300 BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed -
15 Sobic.003G093900 splicing factor, putative, expressed -
16 Sobic.008G142700 expressed protein -
17 Sobic.008G180900 YIF1B, putative, expressed -
18 Sobic.003G396000 copine, putative, expressed K16280: E3 ubiquitin-protein ligase RGLG
19 Sobic.004G049100 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
20 Sobic.003G026300 BES1/BZR1 homolog protein, putative, expressed -


Gene co-expression network
sample Sobic001G381800 Sobic001G381800 Sobic001G515500 Sobic001G515500 Sobic001G381800--Sobic001G515500 Sobic006G208800 Sobic006G208800 Sobic001G381800--Sobic006G208800 Sobic001G076000 Sobic001G076000 Sobic001G381800--Sobic001G076000 Sobic006G218700 Sobic006G218700 Sobic001G381800--Sobic006G218700 Sobic009G011700 Sobic009G011700 Sobic001G381800--Sobic009G011700 Sobic001G478300 Sobic001G478300 Sobic001G381800--Sobic001G478300 Sobic006G257900 Sobic006G257900 Sobic001G381800--Sobic006G257900 Sobic004G188300 Sobic004G188300 Sobic001G381800--Sobic004G188300 Sobic001G427800 Sobic001G427800 Sobic001G381800--Sobic001G427800 Sobic001G515500--Sobic001G381800 Sobic003G311200 Sobic003G311200 Sobic001G515500--Sobic003G311200 Sobic007G034700 Sobic007G034700 Sobic001G515500--Sobic007G034700 Sobic003G396000 Sobic003G396000 Sobic001G515500--Sobic003G396000 Sobic009G011901 Sobic009G011901 Sobic001G515500--Sobic009G011901 Sobic002G382950 Sobic002G382950 Sobic001G515500--Sobic002G382950 Sobic001G082400 Sobic001G082400 Sobic001G515500--Sobic001G082400 Sobic001G515500--Sobic001G076000 Sobic001G071100 Sobic001G071100 Sobic001G515500--Sobic001G071100 Sobic003G036000 Sobic003G036000 Sobic006G208800--Sobic003G036000 Sobic006G208800--Sobic001G381800 Sobic006G208800--Sobic006G218700 Sobic004G325700 Sobic004G325700 Sobic006G208800--Sobic004G325700 Sobic006G263100 Sobic006G263100 Sobic006G208800--Sobic006G263100 Sobic007G011000 Sobic007G011000 Sobic006G208800--Sobic007G011000 Sobic004G280800 Sobic004G280800 Sobic006G208800--Sobic004G280800 Sobic001G464900 Sobic001G464900 Sobic006G208800--Sobic001G464900 Sobic006G208800--Sobic003G396000 Sobic001G149700 Sobic001G149700 Sobic001G076000--Sobic001G149700 Sobic001G076000--Sobic001G478300 Sobic008G142700 Sobic008G142700 Sobic001G076000--Sobic008G142700 Sobic003G379700 Sobic003G379700 Sobic001G076000--Sobic003G379700 Sobic001G076000--Sobic001G427800 Sobic001G441600 Sobic001G441600 Sobic001G076000--Sobic001G441600 Sobic010G071200 Sobic010G071200 Sobic001G076000--Sobic010G071200 Sobic001G076000--Sobic006G257900 Sobic003G116700 Sobic003G116700 Sobic001G076000--Sobic003G116700 Sobic009G134600 Sobic009G134600 Sobic006G218700--Sobic009G134600 Sobic006G218700--Sobic003G396000 Sobic003G044200 Sobic003G044200 Sobic006G218700--Sobic003G044200 Sobic003G119800 Sobic003G119800 Sobic006G218700--Sobic003G119800 Sobic006G218700--Sobic003G379700 Sobic006G218700--Sobic001G076000 Sobic009G167600 Sobic009G167600 Sobic006G218700--Sobic009G167600 Sobic003G056500 Sobic003G056500 Sobic006G218700--Sobic003G056500 Sobic003G376700 Sobic003G376700 Sobic006G218700--Sobic003G376700 Sobic009G011700--Sobic001G478300 Sobic008G180900 Sobic008G180900 Sobic009G011700--Sobic008G180900 Sobic009G011700--Sobic001G076000 Sobic009G011700--Sobic001G427800 Sobic004G231400 Sobic004G231400 Sobic009G011700--Sobic004G231400 Sobic004G049100 Sobic004G049100 Sobic009G011700--Sobic004G049100 Sobic001G371300 Sobic001G371300 Sobic009G011700--Sobic001G371300 Sobic009G237600 Sobic009G237600 Sobic009G011700--Sobic009G237600 Sobic009G011700--Sobic010G071200 Sobic001G478300--Sobic004G231400 Sobic001G478300--Sobic010G071200 Sobic006G209500 Sobic006G209500 Sobic001G478300--Sobic006G209500 Sobic001G478300--Sobic001G427800 Sobic001G478300--Sobic001G149700 Sobic010G055500 Sobic010G055500 Sobic001G478300--Sobic010G055500 Sobic004G263900 Sobic004G263900 Sobic001G478300--Sobic004G263900 Sobic003G273100 Sobic003G273100 Sobic001G478300--Sobic003G273100 Sobic004G274700 Sobic004G274700 Sobic001G478300--Sobic004G274700 Sobic006G257900--Sobic010G071200 Sobic006G257900--Sobic001G149700 Sobic006G257900--Sobic001G478300 Sobic010G154150 Sobic010G154150 Sobic006G257900--Sobic010G154150 Sobic007G063200 Sobic007G063200 Sobic006G257900--Sobic007G063200 Sobic006G257900--Sobic004G231400 Sobic006G257900--Sobic010G055500 Sobic006G257900--Sobic004G188300 Sobic004G164500 Sobic004G164500 Sobic006G257900--Sobic004G164500 Sobic003G026300 Sobic003G026300 Sobic004G188300--Sobic003G026300 Sobic003G093600 Sobic003G093600 Sobic004G188300--Sobic003G093600 Sobic001G222300 Sobic001G222300 Sobic004G188300--Sobic001G222300 Sobic007G150200 Sobic007G150200 Sobic004G188300--Sobic007G150200 Sobic009G183500 Sobic009G183500 Sobic004G188300--Sobic009G183500 Sobic007G023700 Sobic007G023700 Sobic004G188300--Sobic007G023700 Sobic004G188300--Sobic006G257900 Sobic005G167300 Sobic005G167300 Sobic004G188300--Sobic005G167300 Sobic010G218100 Sobic010G218100 Sobic004G188300--Sobic010G218100 Sobic001G427800--Sobic001G478300 Sobic001G427800--Sobic001G149700 Sobic001G427800--Sobic010G071200 Sobic001G427800--Sobic003G273100 Sobic001G427800--Sobic001G371300 Sobic002G291300 Sobic002G291300 Sobic001G427800--Sobic002G291300 Sobic003G093900 Sobic003G093900 Sobic001G427800--Sobic003G093900 Sobic001G427800--Sobic008G142700 Sobic003G350600 Sobic003G350600 Sobic001G427800--Sobic003G350600
Octagon: transcription factors


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