Gene annotation
Transcriptome id Sobic.001G524000.2,Sobic.001G524000.1
Synonym Sb01g048800
Functional annotation CBS domain containing protein, expressed
UniProt A0A1B6QQU1 , A0A1B6QQU0
Pfam PF01595
Panther DB PTHR12064 PTHR12064:SF36
NCBI CDD KOG2118; Predicted membrane protein, contains two CBS domains
KEGG Orthology K16302; metal transporter CNNM
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G47330 : CBS domain-containing protein with a domain of unknown function (DUF21)
RAP-DB (Rice) LOC_Os03g03430.1 : CBS domain containing protein, expressed
MaizeGDB (Corn) Zm00025a053490 , Zm00025a000344
Brachypodium KQK23893 , KQK23894 , KQK13810
Barley HORVU4Hr1G083190.11 , HORVU4Hr1G083190.10 , HORVU4Hr1G083190.13 , HORVU4Hr1G083190.12 , HORVU4Hr1G083190.15 , HORVU4Hr1G083190.14 , HORVU4Hr1G003430.10 , HORVU4Hr1G083190.9 , HORVU4Hr1G083190.8 , HORVU4Hr1G083190.5 , HORVU4Hr1G083190.4 , HORVU4Hr1G083190.7 , HORVU4Hr1G083190.6 , HORVU4Hr1G083190.1 , HORVU4Hr1G083190.3 , HORVU4Hr1G083190.2 , HORVU4Hr1G003430.8 , HORVU4Hr1G003430.9 , HORVU4Hr1G003430.6 , HORVU4Hr1G003430.7 , HORVU4Hr1G003430.4 , HORVU4Hr1G003430.5 , HORVU4Hr1G003430.2 , HORVU4Hr1G003430.3 , HORVU4Hr1G003430.1
Wheat TraesCS5A02G493500 , TraesCS4A02G291600 , TraesCS4B02G318700 , TraesCS4B02G318700 , TraesCS4B02G318700 , TraesCS4B02G022400 , TraesCS4A02G291600 , TraesCS4A02G291600 , TraesCS4D02G315200 , TraesCS4D02G315200 , TraesCS4D02G315200 , TraesCS4D02G315200 , TraesCS4D02G020200
Populus -


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cDNA sequences
Sobic.001G524000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G166600 nucleoside-triphosphatase, putative, expressed -
2 Sobic.005G197100 acyltransferase, putative, expressed K13523: lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase
3 Sobic.004G160700 TUDOR protein with multiple SNc domains, putative, expressed K15979: staphylococcal nuclease domain-containing protein 1
4 Sobic.003G331100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.006G141300 sensitivity to red light reduced protein 1, putative, expressed -
6 Sobic.006G063700 OsFBLD6 - F-box, LRR and FBD domain containing protein, expressed -
7 Sobic.003G304200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phospholipase, patatin family, putative, expressed K14674: TAG lipase / steryl ester hydrolase / phospholipase A2 / LPA acyltransferase
8 Sobic.003G425600 - -
9 Sobic.003G284700 trehalose synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
10 Sobic.002G292900 protein binding protein, putative, expressed -
11 Sobic.006G270100 allantoinase, putative, expressed K01466: allantoinase
12 Sobic.001G452100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
13 Sobic.003G004500 helix-loop-helix DNA-binding domain containing protein, expressed -
14 Sobic.007G018200 RNA recognition motif containing protein, putative, expressed -
15 Sobic.006G139000 carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed -
16 Sobic.006G210700 potassium transporter, putative, expressed -
17 Sobic.004G320700 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
18 Sobic.008G021000 exostosin family domain containing protein, expressed -
19 Sobic.002G313900 potassium transporter, putative, expressed -
20 Sobic.010G250900 cadmium/zinc-transporting ATPase, putative, expressed K01534: Zn2+/Cd2+-exporting ATPase


Gene co-expression network
sample Sobic001G524000 Sobic001G524000 Sobic009G166600 Sobic009G166600 Sobic001G524000--Sobic009G166600 Sobic005G197100 Sobic005G197100 Sobic001G524000--Sobic005G197100 Sobic004G160700 Sobic004G160700 Sobic001G524000--Sobic004G160700 Sobic003G331100 Sobic003G331100 Sobic001G524000--Sobic003G331100 Sobic006G141300 Sobic006G141300 Sobic001G524000--Sobic006G141300 Sobic006G063700 Sobic006G063700 Sobic001G524000--Sobic006G063700 Sobic003G304200 Sobic003G304200 Sobic001G524000--Sobic003G304200 Sobic003G425600 Sobic003G425600 Sobic001G524000--Sobic003G425600 Sobic003G284700 Sobic003G284700 Sobic001G524000--Sobic003G284700 Sobic002G313900 Sobic002G313900 Sobic009G166600--Sobic002G313900 Sobic005G114800 Sobic005G114800 Sobic009G166600--Sobic005G114800 Sobic006G210700 Sobic006G210700 Sobic009G166600--Sobic006G210700 Sobic009G166600--Sobic005G197100 Sobic009G249700 Sobic009G249700 Sobic009G166600--Sobic009G249700 Sobic008G021000 Sobic008G021000 Sobic009G166600--Sobic008G021000 Sobic003G394200 Sobic003G394200 Sobic009G166600--Sobic003G394200 Sobic002G292900 Sobic002G292900 Sobic009G166600--Sobic002G292900 Sobic006G128100 Sobic006G128100 Sobic009G166600--Sobic006G128100 Sobic005G197100--Sobic009G166600 Sobic009G212600 Sobic009G212600 Sobic005G197100--Sobic009G212600 Sobic005G197100--Sobic004G160700 Sobic005G197100--Sobic002G292900 Sobic001G005600 Sobic001G005600 Sobic005G197100--Sobic001G005600 Sobic003G150900 Sobic003G150900 Sobic005G197100--Sobic003G150900 Sobic005G197100--Sobic002G313900 Sobic005G197100--Sobic008G021000 Sobic006G139100 Sobic006G139100 Sobic005G197100--Sobic006G139100 Sobic004G160700--Sobic005G197100 Sobic003G004500 Sobic003G004500 Sobic004G160700--Sobic003G004500 Sobic007G018200 Sobic007G018200 Sobic004G160700--Sobic007G018200 Sobic004G160700--Sobic009G166600 Sobic004G160700--Sobic005G114800 Sobic004G160700--Sobic001G524000 Sobic008G160500 Sobic008G160500 Sobic004G160700--Sobic008G160500 Sobic002G322400 Sobic002G322400 Sobic004G160700--Sobic002G322400 Sobic006G257600 Sobic006G257600 Sobic004G160700--Sobic006G257600 Sobic003G101200 Sobic003G101200 Sobic003G331100--Sobic003G101200 Sobic001G150300 Sobic001G150300 Sobic003G331100--Sobic001G150300 Sobic010G250900 Sobic010G250900 Sobic003G331100--Sobic010G250900 Sobic003G331100--Sobic003G004500 Sobic002G123100 Sobic002G123100 Sobic003G331100--Sobic002G123100 Sobic001G452100 Sobic001G452100 Sobic003G331100--Sobic001G452100 Sobic003G331100--Sobic003G425600 Sobic004G340566 Sobic004G340566 Sobic003G331100--Sobic004G340566 Sobic003G331100--Sobic001G524000 Sobic006G141300--Sobic001G524000 Sobic004G321200 Sobic004G321200 Sobic006G141300--Sobic004G321200 Sobic002G234200 Sobic002G234200 Sobic006G141300--Sobic002G234200 Sobic002G060400 Sobic002G060400 Sobic006G141300--Sobic002G060400 Sobic002G406300 Sobic002G406300 Sobic006G141300--Sobic002G406300 Sobic008G013200 Sobic008G013200 Sobic006G141300--Sobic008G013200 Sobic002G165700 Sobic002G165700 Sobic006G141300--Sobic002G165700 Sobic006G141300--Sobic006G210700 Sobic004G320700 Sobic004G320700 Sobic006G141300--Sobic004G320700 Sobic006G063700--Sobic001G524000 Sobic006G063700--Sobic003G304200 Sobic006G063700--Sobic005G197100 Sobic001G106100 Sobic001G106100 Sobic006G063700--Sobic001G106100 Sobic006G004500 Sobic006G004500 Sobic006G063700--Sobic006G004500 Sobic006G063700--Sobic009G166600 Sobic006G063700--Sobic008G021000 Sobic004G237400 Sobic004G237400 Sobic006G063700--Sobic004G237400 Sobic007G088100 Sobic007G088100 Sobic006G063700--Sobic007G088100 Sobic003G304200--Sobic007G088100 Sobic008G061100 Sobic008G061100 Sobic003G304200--Sobic008G061100 Sobic001G436900 Sobic001G436900 Sobic003G304200--Sobic001G436900 Sobic002G058500 Sobic002G058500 Sobic003G304200--Sobic002G058500 Sobic001G375600 Sobic001G375600 Sobic003G304200--Sobic001G375600 Sobic001G227800 Sobic001G227800 Sobic003G304200--Sobic001G227800 Sobic001G279100 Sobic001G279100 Sobic003G304200--Sobic001G279100 Sobic003G304200--Sobic006G004500 Sobic003G005600 Sobic003G005600 Sobic003G304200--Sobic003G005600 Sobic005G083160 Sobic005G083160 Sobic003G425600--Sobic005G083160 Sobic010G107300 Sobic010G107300 Sobic003G425600--Sobic010G107300 Sobic003G425600--Sobic001G452100 Sobic002G015800 Sobic002G015800 Sobic003G425600--Sobic002G015800 Sobic009G218100 Sobic009G218100 Sobic003G425600--Sobic009G218100 Sobic010G022600 Sobic010G022600 Sobic003G425600--Sobic010G022600 Sobic003G425600--Sobic003G004500 Sobic003G425600--Sobic003G101200 Sobic008G064250 Sobic008G064250 Sobic003G425600--Sobic008G064250 Sobic001G278700 Sobic001G278700 Sobic003G284700--Sobic001G278700 Sobic003G055200 Sobic003G055200 Sobic003G284700--Sobic003G055200 Sobic003G284700--Sobic006G210700 Sobic010G273800 Sobic010G273800 Sobic003G284700--Sobic010G273800 Sobic003G284700--Sobic006G257600 Sobic003G284700--Sobic004G160700 Sobic002G354800 Sobic002G354800 Sobic003G284700--Sobic002G354800 Sobic002G104300 Sobic002G104300 Sobic003G284700--Sobic002G104300 Sobic003G284700--Sobic004G340566
Octagon: transcription factors


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