Gene annotation
Transcriptome id Sobic.001G531300.1
Synonym XTH1, Sb01g049420
Functional annotation glycosyl hydrolases family 16 protein, protein, expressed
UniProt C5X101
Pfam PF00722
Panther DB PTHR31062 PTHR31062:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT4G13080 : xyloglucan endotransglucosylase/hydrolase 1
RAP-DB (Rice) LOC_Os03g02610.1 : glycosyl hydrolases family 16 protein, protein, expressed
MaizeGDB (Corn) Zm00025a000243
Brachypodium PNT78322
Barley HORVU4Hr1G085940.5 , HORVU4Hr1G085940.1 , HORVU4Hr1G085940.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G156500 AGC_PVPK_like_kin82y.9 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
2 Sobic.003G121000 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.003G307400 EF hand family protein, putative, expressed K13448: calcium-binding protein CML
4 Sobic.002G219400 oxidoreductase/ transition metal ion binding protein, putative, expressed -
5 Sobic.002G251100 ternary complex factor MIP1, putative, expressed -
6 Sobic.003G408900 transferase family protein, putative, expressed K15400: omega-hydroxypalmitate O-feruloyl transferase
7 Sobic.010G138300 DUF617 domain containing protein, expressed -
8 Sobic.009G232100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
9 Sobic.003G345700 OsSCP5 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
10 Sobic.003G121100 peroxidase precursor, putative, expressed K00430: peroxidase
11 Sobic.008G102800 expressed protein -
12 Sobic.002G154600 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
13 Sobic.001G522700 no apical meristem protein, putative, expressed -
14 Sobic.001G514200 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
15 Sobic.009G052800 helix-loop-helix DNA-binding domain containing protein, expressed -
16 Sobic.003G257900 auxin-responsive protein, putative, expressed -
17 Sobic.001G481000 expressed protein -
18 Sobic.001G049900 UDP-rhamnose rhamnosyltransferase, putative, expressed -
19 Sobic.007G090460 - K08235: xyloglucan:xyloglucosyl transferase
20 Sobic.007G218800 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ (54% identity with SbCCoAOMT/70.9% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed K18883: tricin synthase


Gene co-expression network
sample Sobic001G531300 Sobic001G531300 Sobic001G156500 Sobic001G156500 Sobic001G531300--Sobic001G156500 Sobic003G121000 Sobic003G121000 Sobic001G531300--Sobic003G121000 Sobic003G307400 Sobic003G307400 Sobic001G531300--Sobic003G307400 Sobic002G219400 Sobic002G219400 Sobic001G531300--Sobic002G219400 Sobic002G251100 Sobic002G251100 Sobic001G531300--Sobic002G251100 Sobic003G408900 Sobic003G408900 Sobic001G531300--Sobic003G408900 Sobic010G138300 Sobic010G138300 Sobic001G531300--Sobic010G138300 Sobic009G232100 Sobic009G232100 Sobic001G531300--Sobic009G232100 Sobic003G345700 Sobic003G345700 Sobic001G531300--Sobic003G345700 Sobic003G250700 Sobic003G250700 Sobic001G156500--Sobic003G250700 Sobic010G047600 Sobic010G047600 Sobic001G156500--Sobic010G047600 Sobic003G115200 Sobic003G115200 Sobic001G156500--Sobic003G115200 Sobic003G000200 Sobic003G000200 Sobic001G156500--Sobic003G000200 Sobic001G261460 Sobic001G261460 Sobic001G156500--Sobic001G261460 Sobic008G055100 Sobic008G055100 Sobic001G156500--Sobic008G055100 Sobic010G014400 Sobic010G014400 Sobic001G156500--Sobic010G014400 Sobic001G156500--Sobic003G121000 Sobic001G156500--Sobic009G232100 Sobic002G154600 Sobic002G154600 Sobic003G121000--Sobic002G154600 Sobic001G514200 Sobic001G514200 Sobic003G121000--Sobic001G514200 Sobic008G135300 Sobic008G135300 Sobic003G121000--Sobic008G135300 Sobic003G121100 Sobic003G121100 Sobic003G121000--Sobic003G121100 Sobic003G183300 Sobic003G183300 Sobic003G121000--Sobic003G183300 Sobic003G121000--Sobic003G408900 Sobic003G121000--Sobic010G047600 Sobic003G121000--Sobic001G261460 Sobic007G090460 Sobic007G090460 Sobic003G121000--Sobic007G090460 Sobic003G307400--Sobic010G138300 Sobic003G307400--Sobic001G514200 Sobic003G307400--Sobic003G121000 Sobic006G119000 Sobic006G119000 Sobic003G307400--Sobic006G119000 Sobic003G307400--Sobic008G135300 Sobic003G034600 Sobic003G034600 Sobic003G307400--Sobic003G034600 Sobic001G522700 Sobic001G522700 Sobic003G307400--Sobic001G522700 Sobic001G295800 Sobic001G295800 Sobic003G307400--Sobic001G295800 Sobic008G102800 Sobic008G102800 Sobic003G307400--Sobic008G102800 Sobic003G399700 Sobic003G399700 Sobic002G219400--Sobic003G399700 Sobic001G231900 Sobic001G231900 Sobic002G219400--Sobic001G231900 Sobic010G088800 Sobic010G088800 Sobic002G219400--Sobic010G088800 Sobic006G274933 Sobic006G274933 Sobic002G219400--Sobic006G274933 Sobic001G302600 Sobic001G302600 Sobic002G219400--Sobic001G302600 Sobic006G105000 Sobic006G105000 Sobic002G219400--Sobic006G105000 Sobic007G021700 Sobic007G021700 Sobic002G219400--Sobic007G021700 Sobic010G063033 Sobic010G063033 Sobic002G219400--Sobic010G063033 Sobic001G304201 Sobic001G304201 Sobic002G219400--Sobic001G304201 Sobic001G470100 Sobic001G470100 Sobic002G251100--Sobic001G470100 Sobic001G038300 Sobic001G038300 Sobic002G251100--Sobic001G038300 Sobic002G333800 Sobic002G333800 Sobic002G251100--Sobic002G333800 Sobic004G285900 Sobic004G285900 Sobic002G251100--Sobic004G285900 Sobic002G251100--Sobic001G531300 Sobic001G475500 Sobic001G475500 Sobic002G251100--Sobic001G475500 Sobic002G251100--Sobic003G034600 Sobic002G251100--Sobic001G156500 Sobic009G181800 Sobic009G181800 Sobic002G251100--Sobic009G181800 Sobic001G238800 Sobic001G238800 Sobic003G408900--Sobic001G238800 Sobic009G106400 Sobic009G106400 Sobic003G408900--Sobic009G106400 Sobic003G360600 Sobic003G360600 Sobic003G408900--Sobic003G360600 Sobic003G408900--Sobic003G121000 Sobic010G106500 Sobic010G106500 Sobic003G408900--Sobic010G106500 Sobic003G408900--Sobic003G121100 Sobic003G411200 Sobic003G411200 Sobic003G408900--Sobic003G411200 Sobic003G093700 Sobic003G093700 Sobic003G408900--Sobic003G093700 Sobic003G039600 Sobic003G039600 Sobic003G408900--Sobic003G039600 Sobic010G138300--Sobic001G514200 Sobic009G199001 Sobic009G199001 Sobic010G138300--Sobic009G199001 Sobic010G138300--Sobic008G102800 Sobic009G221500 Sobic009G221500 Sobic010G138300--Sobic009G221500 Sobic001G245800 Sobic001G245800 Sobic010G138300--Sobic001G245800 Sobic009G074500 Sobic009G074500 Sobic010G138300--Sobic009G074500 Sobic003G340100 Sobic003G340100 Sobic010G138300--Sobic003G340100 Sobic007G050200 Sobic007G050200 Sobic010G138300--Sobic007G050200 Sobic006G227500 Sobic006G227500 Sobic010G138300--Sobic006G227500 Sobic009G088900 Sobic009G088900 Sobic009G232100--Sobic009G088900 Sobic001G049900 Sobic001G049900 Sobic009G232100--Sobic001G049900 Sobic009G188000 Sobic009G188000 Sobic009G232100--Sobic009G188000 Sobic001G310300 Sobic001G310300 Sobic009G232100--Sobic001G310300 Sobic010G085800 Sobic010G085800 Sobic009G232100--Sobic010G085800 Sobic001G361600 Sobic001G361600 Sobic009G232100--Sobic001G361600 Sobic002G396400 Sobic002G396400 Sobic009G232100--Sobic002G396400 Sobic001G304100 Sobic001G304100 Sobic009G232100--Sobic001G304100 Sobic009G109000 Sobic009G109000 Sobic009G232100--Sobic009G109000 Sobic003G247600 Sobic003G247600 Sobic003G345700--Sobic003G247600 Sobic003G345700--Sobic010G138300 Sobic003G345700--Sobic001G156500 Sobic003G122200 Sobic003G122200 Sobic003G345700--Sobic003G122200 Sobic003G236600 Sobic003G236600 Sobic003G345700--Sobic003G236600 Sobic003G294100 Sobic003G294100 Sobic003G345700--Sobic003G294100 Sobic003G345700--Sobic001G038300 Sobic006G102900 Sobic006G102900 Sobic003G345700--Sobic006G102900 Sobic003G345700--Sobic003G034600
Octagon: transcription factors


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