Gene annotation
Transcriptome id Sobic.002G251100.1
Synonym Sb02g028690
Functional annotation ternary complex factor MIP1, putative, expressed
UniProt A0A1B6QDE0
Pfam PF14389 PF04784
Panther DB PTHR23054 PTHR23054:SF23
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G66600 : Protein of unknown function, DUF547
RAP-DB (Rice) LOC_Os09g32010.1 : ternary complex factor MIP1, putative, expressed
MaizeGDB (Corn) Zm00025a047485
Brachypodium KQJ90809 , KQJ90810 , KQJ90811 , PNT64852 , PNT64851
Barley HORVU5Hr1G074220.18 , HORVU5Hr1G074220.12 , HORVU5Hr1G074220.13 , HORVU5Hr1G074220.10 , HORVU5Hr1G074220.11 , HORVU5Hr1G074220.16 , HORVU5Hr1G074220.17 , HORVU5Hr1G074220.14 , HORVU5Hr1G074220.15 , HORVU5Hr1G074220.1 , HORVU5Hr1G074220.2 , HORVU5Hr1G074220.3 , HORVU5Hr1G074220.4 , HORVU5Hr1G074220.5 , HORVU5Hr1G074220.6 , HORVU5Hr1G074220.7 , HORVU5Hr1G074220.8 , HORVU5Hr1G074220.9
Wheat TraesCS5A02G271100 , TraesCS5A02G271100 , TraesCS5B02G271400 , TraesCS5B02G271400 , TraesCS5B02G271400 , TraesCS5B02G271400 , TraesCS5D02G278700 , TraesCS5D02G278700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G470100 OsFBX77 - F-box domain containing protein, expressed -
2 Sobic.001G038300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed -
3 Sobic.002G333800 CSLF8 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed K00770: 1,4-beta-D-xylan synthase
4 Sobic.004G285900 HMG1/2, putative, expressed -
5 Sobic.001G531300 glycosyl hydrolases family 16 protein, protein, expressed -
6 Sobic.001G475500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
7 Sobic.003G034600 CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
8 Sobic.001G156500 AGC_PVPK_like_kin82y.9 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
9 Sobic.009G181800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 9484480)@cytochrome P450, putative, expressed K09754: CYP98A, 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase
10 Sobic.003G121000 peroxidase precursor, putative, expressed K00430: peroxidase
11 Sobic.001G107100 "SRS5(Ortholog in rice:Segami, 2012)"(PubMedID : 31659833)@tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
12 Sobic.005G047100 actin, putative, expressed K10355: actin, other eukaryote
13 Sobic.003G122200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
14 Sobic.002G396400 uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed -
15 Sobic.001G418100 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
16 Sobic.002G350400 tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
17 Sobic.009G232100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
18 Sobic.003G011100 reticulon domain containing protein, putative, expressed -
19 Sobic.002G385400 ORC6 - Putative origin recognition complex subunit 6, expressed K02608: origin recognition complex subunit 6
20 Sobic.002G162300 expressed protein K11270: chromosome transmission fidelity protein 8


Gene co-expression network
sample Sobic002G251100 Sobic002G251100 Sobic001G470100 Sobic001G470100 Sobic002G251100--Sobic001G470100 Sobic001G038300 Sobic001G038300 Sobic002G251100--Sobic001G038300 Sobic002G333800 Sobic002G333800 Sobic002G251100--Sobic002G333800 Sobic004G285900 Sobic004G285900 Sobic002G251100--Sobic004G285900 Sobic001G531300 Sobic001G531300 Sobic002G251100--Sobic001G531300 Sobic001G475500 Sobic001G475500 Sobic002G251100--Sobic001G475500 Sobic003G034600 Sobic003G034600 Sobic002G251100--Sobic003G034600 Sobic001G156500 Sobic001G156500 Sobic002G251100--Sobic001G156500 Sobic009G181800 Sobic009G181800 Sobic002G251100--Sobic009G181800 Sobic001G470100--Sobic002G251100 Sobic005G047100 Sobic005G047100 Sobic001G470100--Sobic005G047100 Sobic001G470100--Sobic001G038300 Sobic001G470100--Sobic001G156500 Sobic002G247800 Sobic002G247800 Sobic001G470100--Sobic002G247800 Sobic007G150800 Sobic007G150800 Sobic001G470100--Sobic007G150800 Sobic001G470100--Sobic004G285900 Sobic001G261549 Sobic001G261549 Sobic001G470100--Sobic001G261549 Sobic001G107200 Sobic001G107200 Sobic001G470100--Sobic001G107200 Sobic002G396400 Sobic002G396400 Sobic001G038300--Sobic002G396400 Sobic001G107100 Sobic001G107100 Sobic001G038300--Sobic001G107100 Sobic003G250700 Sobic003G250700 Sobic001G038300--Sobic003G250700 Sobic001G418100 Sobic001G418100 Sobic001G038300--Sobic001G418100 Sobic010G047600 Sobic010G047600 Sobic001G038300--Sobic010G047600 Sobic001G434300 Sobic001G434300 Sobic001G038300--Sobic001G434300 Sobic001G038300--Sobic001G475500 Sobic001G038300--Sobic007G150800 Sobic003G122200 Sobic003G122200 Sobic001G038300--Sobic003G122200 Sobic002G333800--Sobic001G107100 Sobic002G333800--Sobic001G038300 Sobic001G409100 Sobic001G409100 Sobic002G333800--Sobic001G409100 Sobic006G191700 Sobic006G191700 Sobic002G333800--Sobic006G191700 Sobic002G128800 Sobic002G128800 Sobic002G333800--Sobic002G128800 Sobic002G333800--Sobic002G251100 Sobic002G333800--Sobic002G396400 Sobic006G278100 Sobic006G278100 Sobic002G333800--Sobic006G278100 Sobic003G340100 Sobic003G340100 Sobic002G333800--Sobic003G340100 Sobic001G078600 Sobic001G078600 Sobic004G285900--Sobic001G078600 Sobic004G285900--Sobic001G261549 Sobic004G279601 Sobic004G279601 Sobic004G285900--Sobic004G279601 Sobic007G214700 Sobic007G214700 Sobic004G285900--Sobic007G214700 Sobic006G102900 Sobic006G102900 Sobic004G285900--Sobic006G102900 Sobic002G162300 Sobic002G162300 Sobic004G285900--Sobic002G162300 Sobic007G154500 Sobic007G154500 Sobic004G285900--Sobic007G154500 Sobic009G189200 Sobic009G189200 Sobic004G285900--Sobic009G189200 Sobic001G205000 Sobic001G205000 Sobic004G285900--Sobic001G205000 Sobic001G531300--Sobic001G156500 Sobic003G121000 Sobic003G121000 Sobic001G531300--Sobic003G121000 Sobic003G307400 Sobic003G307400 Sobic001G531300--Sobic003G307400 Sobic002G219400 Sobic002G219400 Sobic001G531300--Sobic002G219400 Sobic001G531300--Sobic002G251100 Sobic003G408900 Sobic003G408900 Sobic001G531300--Sobic003G408900 Sobic010G138300 Sobic010G138300 Sobic001G531300--Sobic010G138300 Sobic009G232100 Sobic009G232100 Sobic001G531300--Sobic009G232100 Sobic003G345700 Sobic003G345700 Sobic001G531300--Sobic003G345700 Sobic001G502900 Sobic001G502900 Sobic001G475500--Sobic001G502900 Sobic003G160700 Sobic003G160700 Sobic001G475500--Sobic003G160700 Sobic001G475500--Sobic003G122200 Sobic005G113300 Sobic005G113300 Sobic001G475500--Sobic005G113300 Sobic001G475500--Sobic007G150800 Sobic009G173500 Sobic009G173500 Sobic001G475500--Sobic009G173500 Sobic001G361600 Sobic001G361600 Sobic001G475500--Sobic001G361600 Sobic004G220000 Sobic004G220000 Sobic001G475500--Sobic004G220000 Sobic003G117500 Sobic003G117500 Sobic001G475500--Sobic003G117500 Sobic004G217450 Sobic004G217450 Sobic003G034600--Sobic004G217450 Sobic003G034600--Sobic003G122200 Sobic003G034600--Sobic001G475500 Sobic003G034600--Sobic003G307400 Sobic006G191800 Sobic006G191800 Sobic003G034600--Sobic006G191800 Sobic006G200000 Sobic006G200000 Sobic003G034600--Sobic006G200000 Sobic003G034600--Sobic003G160700 Sobic003G034600--Sobic009G173500 Sobic003G034600--Sobic007G150800 Sobic001G156500--Sobic003G250700 Sobic001G156500--Sobic010G047600 Sobic003G115200 Sobic003G115200 Sobic001G156500--Sobic003G115200 Sobic003G000200 Sobic003G000200 Sobic001G156500--Sobic003G000200 Sobic001G261460 Sobic001G261460 Sobic001G156500--Sobic001G261460 Sobic008G055100 Sobic008G055100 Sobic001G156500--Sobic008G055100 Sobic010G014400 Sobic010G014400 Sobic001G156500--Sobic010G014400 Sobic001G156500--Sobic003G121000 Sobic001G156500--Sobic009G232100 Sobic009G181800--Sobic001G418100 Sobic003G219800 Sobic003G219800 Sobic009G181800--Sobic003G219800 Sobic010G252401 Sobic010G252401 Sobic009G181800--Sobic010G252401 Sobic008G186100 Sobic008G186100 Sobic009G181800--Sobic008G186100 Sobic009G181800--Sobic005G113300 Sobic003G027400 Sobic003G027400 Sobic009G181800--Sobic003G027400 Sobic002G393400 Sobic002G393400 Sobic009G181800--Sobic002G393400 Sobic002G250000 Sobic002G250000 Sobic009G181800--Sobic002G250000 Sobic004G310200 Sobic004G310200 Sobic009G181800--Sobic004G310200
Octagon: transcription factors


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