Gene annotation
Transcriptome id Sobic.001G542100.1
Synonym EXPB2, ATHEXPBETA1.4, ATEXPB2
Functional annotation expansin precursor, putative, expressed
UniProt A0A1B6QR67
Pfam PF03330 PF01357
Panther DB PTHR31692 PTHR31692:SF23
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65680 : expansin B2
RAP-DB (Rice) LOC_Os03g01270.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a051985 , Zm00025a051980 , Zm00025a051976 , Zm00025a051978 , Zm00025a003327 , Zm00025a003339 , Zm00025a003331 , Zm00025a000109 , Zm00025a000113
Brachypodium KQJ97767 , KQK24135 , KQK24134
Barley HORVU4Hr1G088080.6 , HORVU4Hr1G088080.5 , HORVU5Hr1G019100.10 , HORVU5Hr1G019100.11 , HORVU4Hr1G088080.8 , HORVU4Hr1G088080.9 , HORVU4Hr1G088080.2 , HORVU4Hr1G088080.3 , HORVU4Hr1G088080.1 , HORVU4Hr1G088080.7 , HORVU4Hr1G088080.4 , HORVU5Hr1G019100.8 , HORVU5Hr1G019100.9 , HORVU3Hr1G001920.1 , HORVU3Hr1G001920.3 , HORVU3Hr1G001920.2 , HORVU5Hr1G019100.1 , HORVU5Hr1G019100.3 , HORVU5Hr1G019100.4 , HORVU5Hr1G019100.5 , HORVU5Hr1G019100.6 , HORVU5Hr1G019100.7 , HORVU6Hr1G055090.1 , HORVU6Hr1G055090.2 , HORVU4Hr1G088140.3 , HORVU4Hr1G088140.2 , HORVU4Hr1G088140.1 , HORVU1Hr1G054250.9 , HORVU1Hr1G054250.8 , HORVU1Hr1G054250.3 , HORVU1Hr1G054250.2 , HORVU1Hr1G054250.1 , HORVU1Hr1G054250.7 , HORVU1Hr1G054250.6 , HORVU1Hr1G054250.5 , HORVU1Hr1G054250.4 , HORVU3Hr1G073140.1 , HORVU4Hr1G088080.10 , HORVU4Hr1G088080.11 , HORVU4Hr1G088080.12 , HORVU4Hr1G088080.13 , HORVU3Hr1G105170.1 , HORVU3Hr1G105520.2 , HORVU3Hr1G105520.1 , HORVU5Hr1G019100.12
Wheat TraesCS1D02G215400 , TraesCS1D02G215500 , TraesCS1D02G215500 , TraesCS5D02G086000 , TraesCS5B02G079400 , TraesCS3B02G524500 , TraesCS3D02G474800 , TraesCS3A02G480000 , TraesCS3D02G000500 , TraesCS3D02G000400 , TraesCS3B02G014300 , TraesCS4D02G361700 , TraesCS5A02G538000 , TraesCS5A02G537300 , TraesCS1B02G226100 , TraesCS1B02G226100 , TraesCS3D02G476800 , TraesCS3B02G014400 , TraesCS1A02G212600 , TraesCS5A02G073100 , TraesCS6A02G217100 , TraesCS6D02G198400 , TraesCS3A02G011100 , TraesCS6B02G245700 , TraesCS3A02G479900 , TraesCS4B02G375200 , TraesCS4B02G375600 , TraesCS3B02G526800 , TraesCS4D02G361900
Populus -


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cDNA sequences
Sobic.001G542100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G021400 endoglucanase, putative, expressed -
2 Sobic.007G120200 ABC transporter, ATP-binding protein, putative, expressed -
3 Sobic.002G109100 LTPL42 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
4 Sobic.007G083000 transcriptional repressor, putative, expressed -
5 Sobic.001G458400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Os3bglu6 - beta-glucosidase/beta-fucosidase/beta-galactosidase, expressed K01188: beta-glucosidase
6 Sobic.004G010000 OsSCP6 - Putative Serine Carboxypeptidase homologue, expressed K09645: vitellogenic carboxypeptidase-like protein
7 Sobic.006G172200 glycosyl transferase 8 domain containing protein, putative, expressed -
8 Sobic.006G144700 BRCA1 C Terminus domain containing protein, expressed K10683: BRCA1-associated RING domain protein 1
9 Sobic.009G153500 ankyrin repeat family protein, putative, expressed -
10 Sobic.002G302000 glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
11 Sobic.002G155700 - -
12 Sobic.007G087400 amino acid transporter, putative, expressed -
13 Sobic.008G164300 - -
14 Sobic.004G090100 - -
15 Sobic.010G230300 galactosyltransferase, putative, expressed -
16 Sobic.007G036400 expressed protein -
17 Sobic.007G129000 nucleobase-ascorbate transporter, putative, expressed -
18 Sobic.001G249200 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
19 Sobic.008G068900 expressed protein -
20 Sobic.005G186400 patatin, putative, expressed -


Gene co-expression network
sample Sobic001G542100 Sobic001G542100 Sobic004G021400 Sobic004G021400 Sobic001G542100--Sobic004G021400 Sobic007G120200 Sobic007G120200 Sobic001G542100--Sobic007G120200 Sobic002G109100 Sobic002G109100 Sobic001G542100--Sobic002G109100 Sobic007G083000 Sobic007G083000 Sobic001G542100--Sobic007G083000 Sobic001G458400 Sobic001G458400 Sobic001G542100--Sobic001G458400 Sobic004G010000 Sobic004G010000 Sobic001G542100--Sobic004G010000 Sobic006G172200 Sobic006G172200 Sobic001G542100--Sobic006G172200 Sobic006G144700 Sobic006G144700 Sobic001G542100--Sobic006G144700 Sobic009G153500 Sobic009G153500 Sobic001G542100--Sobic009G153500 Sobic007G087400 Sobic007G087400 Sobic004G021400--Sobic007G087400 Sobic004G021400--Sobic001G542100 Sobic004G021400--Sobic009G153500 Sobic004G021400--Sobic007G120200 Sobic002G155700 Sobic002G155700 Sobic004G021400--Sobic002G155700 Sobic010G062400 Sobic010G062400 Sobic004G021400--Sobic010G062400 Sobic002G222600 Sobic002G222600 Sobic004G021400--Sobic002G222600 Sobic008G164300 Sobic008G164300 Sobic004G021400--Sobic008G164300 Sobic004G079700 Sobic004G079700 Sobic004G021400--Sobic004G079700 Sobic007G120200--Sobic001G542100 Sobic007G120200--Sobic004G021400 Sobic004G093400 Sobic004G093400 Sobic007G120200--Sobic004G093400 Sobic002G351700 Sobic002G351700 Sobic007G120200--Sobic002G351700 Sobic007G129000 Sobic007G129000 Sobic007G120200--Sobic007G129000 Sobic009G148000 Sobic009G148000 Sobic007G120200--Sobic009G148000 Sobic007G120200--Sobic002G109100 Sobic003G180100 Sobic003G180100 Sobic007G120200--Sobic003G180100 Sobic007G120200--Sobic007G087400 Sobic002G109100--Sobic001G458400 Sobic001G085200 Sobic001G085200 Sobic002G109100--Sobic001G085200 Sobic006G263400 Sobic006G263400 Sobic002G109100--Sobic006G263400 Sobic006G143300 Sobic006G143300 Sobic002G109100--Sobic006G143300 Sobic001G123300 Sobic001G123300 Sobic002G109100--Sobic001G123300 Sobic003G208800 Sobic003G208800 Sobic002G109100--Sobic003G208800 Sobic002G343000 Sobic002G343000 Sobic002G109100--Sobic002G343000 Sobic002G109100--Sobic007G083000 Sobic003G430100 Sobic003G430100 Sobic002G109100--Sobic003G430100 Sobic007G083000--Sobic001G458400 Sobic010G230300 Sobic010G230300 Sobic007G083000--Sobic010G230300 Sobic007G083000--Sobic002G109100 Sobic009G060501 Sobic009G060501 Sobic007G083000--Sobic009G060501 Sobic008G122500 Sobic008G122500 Sobic007G083000--Sobic008G122500 Sobic007G083000--Sobic001G542100 Sobic001G249200 Sobic001G249200 Sobic007G083000--Sobic001G249200 Sobic003G149600 Sobic003G149600 Sobic007G083000--Sobic003G149600 Sobic002G086500 Sobic002G086500 Sobic007G083000--Sobic002G086500 Sobic001G458400--Sobic002G109100 Sobic001G458400--Sobic007G083000 Sobic001G458400--Sobic004G010000 Sobic001G458400--Sobic006G143300 Sobic001G458400--Sobic001G123300 Sobic001G458400--Sobic009G060501 Sobic006G200901 Sobic006G200901 Sobic001G458400--Sobic006G200901 Sobic005G186400 Sobic005G186400 Sobic001G458400--Sobic005G186400 Sobic003G217500 Sobic003G217500 Sobic001G458400--Sobic003G217500 Sobic004G010000--Sobic005G186400 Sobic004G010000--Sobic001G458400 Sobic007G191200 Sobic007G191200 Sobic004G010000--Sobic007G191200 Sobic002G115900 Sobic002G115900 Sobic004G010000--Sobic002G115900 Sobic008G069000 Sobic008G069000 Sobic004G010000--Sobic008G069000 Sobic010G029800 Sobic010G029800 Sobic004G010000--Sobic010G029800 Sobic004G010000--Sobic006G143300 Sobic002G238900 Sobic002G238900 Sobic004G010000--Sobic002G238900 Sobic008G181200 Sobic008G181200 Sobic004G010000--Sobic008G181200 Sobic009G073400 Sobic009G073400 Sobic006G172200--Sobic009G073400 Sobic010G054100 Sobic010G054100 Sobic006G172200--Sobic010G054100 Sobic006G172200--Sobic006G144700 Sobic003G345200 Sobic003G345200 Sobic006G172200--Sobic003G345200 Sobic010G067800 Sobic010G067800 Sobic006G172200--Sobic010G067800 Sobic004G119700 Sobic004G119700 Sobic006G172200--Sobic004G119700 Sobic002G214200 Sobic002G214200 Sobic006G172200--Sobic002G214200 Sobic006G172200--Sobic002G351700 Sobic001G507000 Sobic001G507000 Sobic006G172200--Sobic001G507000 Sobic002G191000 Sobic002G191000 Sobic006G144700--Sobic002G191000 Sobic006G144700--Sobic007G129000 Sobic009G087000 Sobic009G087000 Sobic006G144700--Sobic009G087000 Sobic010G067900 Sobic010G067900 Sobic006G144700--Sobic010G067900 Sobic006G144700--Sobic006G172200 Sobic001G146900 Sobic001G146900 Sobic006G144700--Sobic001G146900 Sobic010G103700 Sobic010G103700 Sobic006G144700--Sobic010G103700 Sobic004G271500 Sobic004G271500 Sobic006G144700--Sobic004G271500 Sobic004G321400 Sobic004G321400 Sobic006G144700--Sobic004G321400 Sobic009G153500--Sobic002G155700 Sobic009G153500--Sobic004G021400 Sobic009G153500--Sobic007G087400 Sobic004G232600 Sobic004G232600 Sobic009G153500--Sobic004G232600 Sobic003G205600 Sobic003G205600 Sobic009G153500--Sobic003G205600 Sobic004G160500 Sobic004G160500 Sobic009G153500--Sobic004G160500 Sobic002G096900 Sobic002G096900 Sobic009G153500--Sobic002G096900 Sobic001G348800 Sobic001G348800 Sobic009G153500--Sobic001G348800 Sobic009G153500--Sobic010G230300
Octagon: transcription factors


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