Gene annotation
Transcriptome id Sobic.007G083000.1
Synonym Sb07g006830, SIN3, SNL3, ATSIN3
Functional annotation transcriptional repressor, putative, expressed
UniProt C5YJ17
Pfam PF02671
Panther DB PTHR12346
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT1G59890 : SIN3-like 5
RAP-DB (Rice) LOC_Os05g01020.2 : transcriptional repressor, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G458400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Os3bglu6 - beta-glucosidase/beta-fucosidase/beta-galactosidase, expressed K01188: beta-glucosidase
2 Sobic.010G230300 galactosyltransferase, putative, expressed -
3 Sobic.002G109100 LTPL42 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
4 Sobic.009G060501 - -
5 Sobic.008G122500 expressed protein -
6 Sobic.001G542100 expansin precursor, putative, expressed -
7 Sobic.001G249200 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
8 Sobic.003G149600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@FAD dependent oxidoreductase domain containing protein, expressed K00306: sarcosine oxidase / L-pipecolate oxidase
9 Sobic.002G086500 alpha-1,2-fucosidase, putative, expressed K15923: AXY8, FUC95A, alpha-L-fucosidase 2
10 Sobic.003G430100 Phosphoesterase family protein(PubMedID : 24906815)@phosphoesterase family protein, putative, expressed K01114: phospholipase C
11 Sobic.005G036300 expressed protein -
12 Sobic.004G167900 pectinesterase inhibitor domain containing protein, putative, expressed -
13 Sobic.004G010000 OsSCP6 - Putative Serine Carboxypeptidase homologue, expressed K09645: vitellogenic carboxypeptidase-like protein
14 Sobic.010G137700 - -
15 Sobic.008G184400 aspartic proteinase, putative, expressed -
16 Sobic.002G049800 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
17 Sobic.005G226800 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
18 Sobic.008G181200 - -
19 Sobic.002G155700 - -
20 Sobic.005G037800 sialyltransferase family domain containing protein, expressed -


Gene co-expression network
sample Sobic007G083000 Sobic007G083000 Sobic001G458400 Sobic001G458400 Sobic007G083000--Sobic001G458400 Sobic010G230300 Sobic010G230300 Sobic007G083000--Sobic010G230300 Sobic002G109100 Sobic002G109100 Sobic007G083000--Sobic002G109100 Sobic009G060501 Sobic009G060501 Sobic007G083000--Sobic009G060501 Sobic008G122500 Sobic008G122500 Sobic007G083000--Sobic008G122500 Sobic001G542100 Sobic001G542100 Sobic007G083000--Sobic001G542100 Sobic001G249200 Sobic001G249200 Sobic007G083000--Sobic001G249200 Sobic003G149600 Sobic003G149600 Sobic007G083000--Sobic003G149600 Sobic002G086500 Sobic002G086500 Sobic007G083000--Sobic002G086500 Sobic001G458400--Sobic002G109100 Sobic001G458400--Sobic007G083000 Sobic004G010000 Sobic004G010000 Sobic001G458400--Sobic004G010000 Sobic006G143300 Sobic006G143300 Sobic001G458400--Sobic006G143300 Sobic001G123300 Sobic001G123300 Sobic001G458400--Sobic001G123300 Sobic001G458400--Sobic009G060501 Sobic006G200901 Sobic006G200901 Sobic001G458400--Sobic006G200901 Sobic005G186400 Sobic005G186400 Sobic001G458400--Sobic005G186400 Sobic003G217500 Sobic003G217500 Sobic001G458400--Sobic003G217500 Sobic010G230300--Sobic007G083000 Sobic010G230300--Sobic008G122500 Sobic003G430100 Sobic003G430100 Sobic010G230300--Sobic003G430100 Sobic004G210000 Sobic004G210000 Sobic010G230300--Sobic004G210000 Sobic005G226000 Sobic005G226000 Sobic010G230300--Sobic005G226000 Sobic002G155700 Sobic002G155700 Sobic010G230300--Sobic002G155700 Sobic010G230300--Sobic001G458400 Sobic007G208200 Sobic007G208200 Sobic010G230300--Sobic007G208200 Sobic010G230300--Sobic003G149600 Sobic002G109100--Sobic001G458400 Sobic001G085200 Sobic001G085200 Sobic002G109100--Sobic001G085200 Sobic006G263400 Sobic006G263400 Sobic002G109100--Sobic006G263400 Sobic002G109100--Sobic006G143300 Sobic002G109100--Sobic001G123300 Sobic003G208800 Sobic003G208800 Sobic002G109100--Sobic003G208800 Sobic002G343000 Sobic002G343000 Sobic002G109100--Sobic002G343000 Sobic002G109100--Sobic007G083000 Sobic002G109100--Sobic003G430100 Sobic006G276401 Sobic006G276401 Sobic009G060501--Sobic006G276401 Sobic003G135201 Sobic003G135201 Sobic009G060501--Sobic003G135201 Sobic001G323500 Sobic001G323500 Sobic009G060501--Sobic001G323500 Sobic005G141500 Sobic005G141500 Sobic009G060501--Sobic005G141500 Sobic005G221200 Sobic005G221200 Sobic009G060501--Sobic005G221200 Sobic005G148700 Sobic005G148700 Sobic009G060501--Sobic005G148700 Sobic005G147700 Sobic005G147700 Sobic009G060501--Sobic005G147700 Sobic005G109900 Sobic005G109900 Sobic009G060501--Sobic005G109900 Sobic009G039700 Sobic009G039700 Sobic009G060501--Sobic009G039700 Sobic008G122500--Sobic002G086500 Sobic005G052100 Sobic005G052100 Sobic008G122500--Sobic005G052100 Sobic002G069800 Sobic002G069800 Sobic008G122500--Sobic002G069800 Sobic007G127700 Sobic007G127700 Sobic008G122500--Sobic007G127700 Sobic007G069800 Sobic007G069800 Sobic008G122500--Sobic007G069800 Sobic003G076400 Sobic003G076400 Sobic008G122500--Sobic003G076400 Sobic005G003100 Sobic005G003100 Sobic008G122500--Sobic005G003100 Sobic008G122500--Sobic003G149600 Sobic001G112350 Sobic001G112350 Sobic008G122500--Sobic001G112350 Sobic004G021400 Sobic004G021400 Sobic001G542100--Sobic004G021400 Sobic007G120200 Sobic007G120200 Sobic001G542100--Sobic007G120200 Sobic001G542100--Sobic002G109100 Sobic001G542100--Sobic007G083000 Sobic001G542100--Sobic001G458400 Sobic001G542100--Sobic004G010000 Sobic006G172200 Sobic006G172200 Sobic001G542100--Sobic006G172200 Sobic006G144700 Sobic006G144700 Sobic001G542100--Sobic006G144700 Sobic009G153500 Sobic009G153500 Sobic001G542100--Sobic009G153500 Sobic005G071300 Sobic005G071300 Sobic001G249200--Sobic005G071300 Sobic010G031400 Sobic010G031400 Sobic001G249200--Sobic010G031400 Sobic001G297700 Sobic001G297700 Sobic001G249200--Sobic001G297700 Sobic005G185400 Sobic005G185400 Sobic001G249200--Sobic005G185400 Sobic009G057100 Sobic009G057100 Sobic001G249200--Sobic009G057100 Sobic010G035000 Sobic010G035000 Sobic001G249200--Sobic010G035000 Sobic005G184500 Sobic005G184500 Sobic001G249200--Sobic005G184500 Sobic006G105300 Sobic006G105300 Sobic001G249200--Sobic006G105300 Sobic002G300900 Sobic002G300900 Sobic001G249200--Sobic002G300900 Sobic009G051201 Sobic009G051201 Sobic003G149600--Sobic009G051201 Sobic003G149600--Sobic007G127700 Sobic007G209700 Sobic007G209700 Sobic003G149600--Sobic007G209700 Sobic002G234100 Sobic002G234100 Sobic003G149600--Sobic002G234100 Sobic003G378700 Sobic003G378700 Sobic003G149600--Sobic003G378700 Sobic010G020100 Sobic010G020100 Sobic003G149600--Sobic010G020100 Sobic002G101200 Sobic002G101200 Sobic003G149600--Sobic002G101200 Sobic007G054700 Sobic007G054700 Sobic003G149600--Sobic007G054700 Sobic002G217000 Sobic002G217000 Sobic003G149600--Sobic002G217000 Sobic002G086500--Sobic003G076400 Sobic001G029700 Sobic001G029700 Sobic002G086500--Sobic001G029700 Sobic009G139500 Sobic009G139500 Sobic002G086500--Sobic009G139500 Sobic006G161300 Sobic006G161300 Sobic002G086500--Sobic006G161300 Sobic010G111400 Sobic010G111400 Sobic002G086500--Sobic010G111400 Sobic002G086500--Sobic002G101200 Sobic002G058900 Sobic002G058900 Sobic002G086500--Sobic002G058900 Sobic005G035500 Sobic005G035500 Sobic002G086500--Sobic005G035500 Sobic005G033600 Sobic005G033600 Sobic002G086500--Sobic005G033600
Octagon: transcription factors


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