Gene annotation
Transcriptome id Sobic.002G117100.1
Synonym Sb02g009990
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
cyclin-dependent kinase G-1, putative, expressed
UniProt C5X4E9
Pfam PF07714
Panther DB PTHR24056 PTHR24056:SF231
NCBI CDD KOG0659; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 KOG0583Serine/threonine protein kinase
KEGG Orthology K08818; cell division cycle 2-like
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G67580 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os10g06510.1 : cyclin-dependent kinase G-1, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK09091
Barley HORVU1Hr1G021630.2 , HORVU1Hr1G021640.1 , HORVU1Hr1G021640.2 , HORVU1Hr1G021630.1 , HORVU4Hr1G069890.1 , HORVU4Hr1G069860.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G061300 - -
2 Sobic.003G322900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.002G263400 expressed protein -
4 Sobic.002G104900 B12D protein, putative, expressed -
5 Sobic.001G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
6 Sobic.003G430400 OsCML31 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
7 Sobic.004G088551 - -
8 Sobic.001G317000 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.002G195400 "Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@Protein mannitol dehydrogenase (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
10 Sobic.004G189400 expressed protein -
11 Sobic.007G145600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@4-Coumarate-CoA ligase(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
12 Sobic.003G426000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.010G117900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
14 Sobic.005G101800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -
15 Sobic.003G252800 hypothetical protein -
16 Sobic.004G221500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein K13113: UBL5, ubiquitin-like protein 5
17 Sobic.003G200700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@WRKY27, expressed -
18 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
19 Sobic.007G067600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
20 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease


Gene co-expression network
sample Sobic002G117100 Sobic002G117100 Sobic007G061300 Sobic007G061300 Sobic002G117100--Sobic007G061300 Sobic003G322900 Sobic003G322900 Sobic002G117100--Sobic003G322900 Sobic002G263400 Sobic002G263400 Sobic002G117100--Sobic002G263400 Sobic002G104900 Sobic002G104900 Sobic002G117100--Sobic002G104900 Sobic001G119100 Sobic001G119100 Sobic002G117100--Sobic001G119100 Sobic003G430400 Sobic003G430400 Sobic002G117100--Sobic003G430400 Sobic004G088551 Sobic004G088551 Sobic002G117100--Sobic004G088551 Sobic001G317000 Sobic001G317000 Sobic002G117100--Sobic001G317000 Sobic002G195400 Sobic002G195400 Sobic002G117100--Sobic002G195400 Sobic004G189400 Sobic004G189400 Sobic007G061300--Sobic004G189400 Sobic007G061300--Sobic002G263400 Sobic001G187200 Sobic001G187200 Sobic007G061300--Sobic001G187200 Sobic004G148000 Sobic004G148000 Sobic007G061300--Sobic004G148000 Sobic004G148200 Sobic004G148200 Sobic007G061300--Sobic004G148200 Sobic005G029200 Sobic005G029200 Sobic007G061300--Sobic005G029200 Sobic007G061300--Sobic004G088551 Sobic010G084400 Sobic010G084400 Sobic007G061300--Sobic010G084400 Sobic007G227300 Sobic007G227300 Sobic007G061300--Sobic007G227300 Sobic003G322900--Sobic002G263400 Sobic003G322900--Sobic004G189400 Sobic002G183200 Sobic002G183200 Sobic003G322900--Sobic002G183200 Sobic003G322900--Sobic004G148000 Sobic003G382600 Sobic003G382600 Sobic003G322900--Sobic003G382600 Sobic005G091500 Sobic005G091500 Sobic003G322900--Sobic005G091500 Sobic002G140400 Sobic002G140400 Sobic003G322900--Sobic002G140400 Sobic007G155100 Sobic007G155100 Sobic003G322900--Sobic007G155100 Sobic003G307801 Sobic003G307801 Sobic003G322900--Sobic003G307801 Sobic002G263400--Sobic002G140400 Sobic002G263400--Sobic004G189400 Sobic003G282901 Sobic003G282901 Sobic002G263400--Sobic003G282901 Sobic004G243100 Sobic004G243100 Sobic002G263400--Sobic004G243100 Sobic001G018300 Sobic001G018300 Sobic002G263400--Sobic001G018300 Sobic001G423800 Sobic001G423800 Sobic002G263400--Sobic001G423800 Sobic002G192000 Sobic002G192000 Sobic002G263400--Sobic002G192000 Sobic001G231400 Sobic001G231400 Sobic002G263400--Sobic001G231400 Sobic002G263400--Sobic003G322900 Sobic002G104900--Sobic001G317000 Sobic007G145600 Sobic007G145600 Sobic002G104900--Sobic007G145600 Sobic010G178500 Sobic010G178500 Sobic002G104900--Sobic010G178500 Sobic001G015100 Sobic001G015100 Sobic002G104900--Sobic001G015100 Sobic009G141800 Sobic009G141800 Sobic002G104900--Sobic009G141800 Sobic002G104900--Sobic002G140400 Sobic002G104900--Sobic004G088551 Sobic003G094200 Sobic003G094200 Sobic002G104900--Sobic003G094200 Sobic002G104900--Sobic002G263400 Sobic001G119000 Sobic001G119000 Sobic001G119100--Sobic001G119000 Sobic001G119100--Sobic002G183200 Sobic003G227300 Sobic003G227300 Sobic001G119100--Sobic003G227300 Sobic001G119100--Sobic007G145600 Sobic001G119100--Sobic005G091500 Sobic001G119100--Sobic004G189400 Sobic001G119100--Sobic010G084400 Sobic001G119100--Sobic007G061300 Sobic001G339700 Sobic001G339700 Sobic001G119100--Sobic001G339700 Sobic003G430400--Sobic002G263400 Sobic003G430400--Sobic002G140400 Sobic001G040200 Sobic001G040200 Sobic003G430400--Sobic001G040200 Sobic006G066200 Sobic006G066200 Sobic003G430400--Sobic006G066200 Sobic002G140300 Sobic002G140300 Sobic003G430400--Sobic002G140300 Sobic007G074000 Sobic007G074000 Sobic003G430400--Sobic007G074000 Sobic003G092900 Sobic003G092900 Sobic003G430400--Sobic003G092900 Sobic002G356101 Sobic002G356101 Sobic003G430400--Sobic002G356101 Sobic004G222500 Sobic004G222500 Sobic003G430400--Sobic004G222500 Sobic004G088551--Sobic001G317000 Sobic004G088551--Sobic002G195400 Sobic005G101800 Sobic005G101800 Sobic004G088551--Sobic005G101800 Sobic007G067600 Sobic007G067600 Sobic004G088551--Sobic007G067600 Sobic010G117900 Sobic010G117900 Sobic004G088551--Sobic010G117900 Sobic001G317200 Sobic001G317200 Sobic004G088551--Sobic001G317200 Sobic004G088551--Sobic001G423800 Sobic004G088551--Sobic007G061300 Sobic004G112300 Sobic004G112300 Sobic004G088551--Sobic004G112300 Sobic001G317000--Sobic004G088551 Sobic001G317000--Sobic001G423800 Sobic006G275200 Sobic006G275200 Sobic001G317000--Sobic006G275200 Sobic001G119400 Sobic001G119400 Sobic001G317000--Sobic001G119400 Sobic001G317000--Sobic002G195400 Sobic001G097600 Sobic001G097600 Sobic001G317000--Sobic001G097600 Sobic002G261000 Sobic002G261000 Sobic001G317000--Sobic002G261000 Sobic009G183400 Sobic009G183400 Sobic001G317000--Sobic009G183400 Sobic001G038900 Sobic001G038900 Sobic001G317000--Sobic001G038900 Sobic002G195400--Sobic007G067600 Sobic001G319700 Sobic001G319700 Sobic002G195400--Sobic001G319700 Sobic003G426100 Sobic003G426100 Sobic002G195400--Sobic003G426100 Sobic007G066932 Sobic007G066932 Sobic002G195400--Sobic007G066932 Sobic010G102300 Sobic010G102300 Sobic002G195400--Sobic010G102300 Sobic003G426000 Sobic003G426000 Sobic002G195400--Sobic003G426000 Sobic007G067350 Sobic007G067350 Sobic002G195400--Sobic007G067350 Sobic002G195400--Sobic001G317000 Sobic004G304300 Sobic004G304300 Sobic002G195400--Sobic004G304300
Octagon: transcription factors


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