Gene annotation
Transcriptome id Sobic.002G190700.4,Sobic.002G190700.1,Sobic.002G190700.2,Sobic.002G190700.3
Synonym 1, ATCYCD1, Sb02g023800, CYCD1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
cyclin, putative, expressed
UniProt A0A1W0W4V6 , A0A1B6QCA7 , A0A1W0W522 , A0A1W0W540
Pfam PF00134 PF02984 PF00134
Panther DB PTHR10177 PTHR10177:SF206
NCBI CDD -
KEGG Orthology K18810; cyclin D1/2/4, plant
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT1G70210 : CYCLIN D1;1
RAP-DB (Rice) LOC_Os08g32540.1,LOC_Os09g21450.1 : cyclin, putative, expressed
MaizeGDB (Corn) Zm00025a046842
Brachypodium KQJ90108 , KQJ90109 , KQJ90110 , PNT64505 , PNT64504 , PNT64507 , PNT64506
Barley HORVU5Hr1G059770.10 , HORVU5Hr1G059770.9 , HORVU5Hr1G059770.8 , HORVU5Hr1G059770.7 , HORVU5Hr1G059770.6 , HORVU5Hr1G059770.5 , HORVU5Hr1G059770.4 , HORVU5Hr1G059770.3 , HORVU5Hr1G059770.2 , HORVU5Hr1G059770.1
Wheat TraesCS5A02G200500 , TraesCS5B02G199100 , TraesCS5B02G199100 , TraesCS5A02G200500 , TraesCS5D02G206200 , TraesCS5D02G206200
Populus -


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cDNA sequences
Sobic.002G190700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G082200 white-brown complex homolog protein 11, putative, expressed -
2 Sobic.008G155400 ankyrin, putative, expressed -
3 Sobic.006G239700 plant protein of unknown function domain containing protein, expressed -
4 Sobic.006G077600 phosphatidylinositol N-acetylglucosaminyltransferase subunit P, putative, expressed K03861: PIGP, GPI19, phosphatidylinositol N-acetylglucosaminyltransferase subunit P
5 Sobic.005G170700 OsFBDUF64 - F-box and DUF domain containing protein -
6 Sobic.001G478900 pentatricopeptide, putative, expressed -
7 Sobic.004G178700 protein transport protein Sec61, putative, expressed K10956: protein transport protein SEC61 subunit alpha
8 Sobic.010G068900 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
9 Sobic.004G189000 - -
10 Sobic.009G047700 E3 ubiquitin-protein ligase SINA-like 2, putative, expressed -
11 Sobic.006G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.003G112600 endoplasmic oxidoreductin-1 precursor, putative, expressed K10950: ERO1-like protein alpha
13 Sobic.005G171700 OsFBDUF20 - F-box and DUF domain containing protein, expressed -
14 Sobic.003G402900 HYS1, putative, expressed -
15 Sobic.005G124850 - -
16 Sobic.004G140400 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
17 Sobic.008G036600 expressed protein -
18 Sobic.001G267500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat containing protein, expressed -
19 Sobic.004G043600 expressed protein -
20 Sobic.008G095900 ATP binding protein, putative, expressed K17592: sacsin


Gene co-expression network
sample Sobic002G190700 Sobic002G190700 Sobic007G082200 Sobic007G082200 Sobic002G190700--Sobic007G082200 Sobic008G155400 Sobic008G155400 Sobic002G190700--Sobic008G155400 Sobic006G239700 Sobic006G239700 Sobic002G190700--Sobic006G239700 Sobic006G077600 Sobic006G077600 Sobic002G190700--Sobic006G077600 Sobic005G170700 Sobic005G170700 Sobic002G190700--Sobic005G170700 Sobic001G478900 Sobic001G478900 Sobic002G190700--Sobic001G478900 Sobic004G178700 Sobic004G178700 Sobic002G190700--Sobic004G178700 Sobic010G068900 Sobic010G068900 Sobic002G190700--Sobic010G068900 Sobic004G189000 Sobic004G189000 Sobic002G190700--Sobic004G189000 Sobic007G082200--Sobic006G239700 Sobic010G146000 Sobic010G146000 Sobic007G082200--Sobic010G146000 Sobic008G100300 Sobic008G100300 Sobic007G082200--Sobic008G100300 Sobic001G065200 Sobic001G065200 Sobic007G082200--Sobic001G065200 Sobic001G444900 Sobic001G444900 Sobic007G082200--Sobic001G444900 Sobic003G091600 Sobic003G091600 Sobic007G082200--Sobic003G091600 Sobic004G011900 Sobic004G011900 Sobic007G082200--Sobic004G011900 Sobic008G036600 Sobic008G036600 Sobic007G082200--Sobic008G036600 Sobic007G082200--Sobic004G189000 Sobic002G158300 Sobic002G158300 Sobic008G155400--Sobic002G158300 Sobic003G342500 Sobic003G342500 Sobic008G155400--Sobic003G342500 Sobic005G171700 Sobic005G171700 Sobic008G155400--Sobic005G171700 Sobic004G140400 Sobic004G140400 Sobic008G155400--Sobic004G140400 Sobic002G102300 Sobic002G102300 Sobic008G155400--Sobic002G102300 Sobic008G155400--Sobic008G036600 Sobic001G270700 Sobic001G270700 Sobic008G155400--Sobic001G270700 Sobic003G213000 Sobic003G213000 Sobic008G155400--Sobic003G213000 Sobic002G108100 Sobic002G108100 Sobic008G155400--Sobic002G108100 Sobic006G239700--Sobic007G082200 Sobic006G239700--Sobic008G036600 Sobic006G239700--Sobic008G155400 Sobic006G239700--Sobic005G171700 Sobic006G239700--Sobic004G140400 Sobic006G239700--Sobic001G444900 Sobic006G239700--Sobic004G178700 Sobic006G239700--Sobic010G146000 Sobic006G239700--Sobic004G011900 Sobic002G313100 Sobic002G313100 Sobic006G077600--Sobic002G313100 Sobic001G072900 Sobic001G072900 Sobic006G077600--Sobic001G072900 Sobic001G487000 Sobic001G487000 Sobic006G077600--Sobic001G487000 Sobic001G541601 Sobic001G541601 Sobic006G077600--Sobic001G541601 Sobic010G196300 Sobic010G196300 Sobic006G077600--Sobic010G196300 Sobic004G076850 Sobic004G076850 Sobic006G077600--Sobic004G076850 Sobic003G293100 Sobic003G293100 Sobic006G077600--Sobic003G293100 Sobic008G166100 Sobic008G166100 Sobic006G077600--Sobic008G166100 Sobic009G201000 Sobic009G201000 Sobic006G077600--Sobic009G201000 Sobic003G429500 Sobic003G429500 Sobic005G170700--Sobic003G429500 Sobic001G261480 Sobic001G261480 Sobic005G170700--Sobic001G261480 Sobic008G045600 Sobic008G045600 Sobic005G170700--Sobic008G045600 Sobic005G221550 Sobic005G221550 Sobic005G170700--Sobic005G221550 Sobic007G005000 Sobic007G005000 Sobic005G170700--Sobic007G005000 Sobic008G106400 Sobic008G106400 Sobic005G170700--Sobic008G106400 Sobic003G266700 Sobic003G266700 Sobic005G170700--Sobic003G266700 Sobic003G366850 Sobic003G366850 Sobic005G170700--Sobic003G366850 Sobic008G065400 Sobic008G065400 Sobic005G170700--Sobic008G065400 Sobic008G095900 Sobic008G095900 Sobic001G478900--Sobic008G095900 Sobic006G262800 Sobic006G262800 Sobic001G478900--Sobic006G262800 Sobic004G256900 Sobic004G256900 Sobic001G478900--Sobic004G256900 Sobic003G184300 Sobic003G184300 Sobic001G478900--Sobic003G184300 Sobic009G047700 Sobic009G047700 Sobic001G478900--Sobic009G047700 Sobic004G051600 Sobic004G051600 Sobic001G478900--Sobic004G051600 Sobic001G478900--Sobic010G068900 Sobic009G253101 Sobic009G253101 Sobic001G478900--Sobic009G253101 Sobic010G123100 Sobic010G123100 Sobic001G478900--Sobic010G123100 Sobic004G178700--Sobic002G102300 Sobic004G178700--Sobic004G140400 Sobic003G392275 Sobic003G392275 Sobic004G178700--Sobic003G392275 Sobic010G006800 Sobic010G006800 Sobic004G178700--Sobic010G006800 Sobic010G134700 Sobic010G134700 Sobic004G178700--Sobic010G134700 Sobic004G178700--Sobic001G270700 Sobic003G238250 Sobic003G238250 Sobic004G178700--Sobic003G238250 Sobic004G178700--Sobic005G171700 Sobic004G098800 Sobic004G098800 Sobic004G178700--Sobic004G098800 Sobic002G172500 Sobic002G172500 Sobic010G068900--Sobic002G172500 Sobic010G068900--Sobic004G256900 Sobic010G068900--Sobic006G262800 Sobic010G190900 Sobic010G190900 Sobic010G068900--Sobic010G190900 Sobic004G241000 Sobic004G241000 Sobic010G068900--Sobic004G241000 Sobic006G069100 Sobic006G069100 Sobic010G068900--Sobic006G069100 Sobic006G085900 Sobic006G085900 Sobic010G068900--Sobic006G085900 Sobic010G068900--Sobic003G184300 Sobic010G068900--Sobic001G478900 Sobic006G117700 Sobic006G117700 Sobic004G189000--Sobic006G117700 Sobic006G071362 Sobic006G071362 Sobic004G189000--Sobic006G071362 Sobic003G156900 Sobic003G156900 Sobic004G189000--Sobic003G156900 Sobic009G061500 Sobic009G061500 Sobic004G189000--Sobic009G061500 Sobic004G189000--Sobic004G140400 Sobic006G093600 Sobic006G093600 Sobic004G189000--Sobic006G093600 Sobic001G340800 Sobic001G340800 Sobic004G189000--Sobic001G340800 Sobic001G232600 Sobic001G232600 Sobic004G189000--Sobic001G232600 Sobic010G130601 Sobic010G130601 Sobic004G189000--Sobic010G130601
Octagon: transcription factors


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