Gene annotation
Transcriptome id Sobic.002G233000.1
Synonym Sb02g027220
Functional annotation RING-H2 finger protein ATL5F, putative, expressed
UniProt C5X315
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF101
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G10380 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os09g29370.1 : RING-H2 finger protein ATL5F, putative, expressed
MaizeGDB (Corn) Zm00025a014122 , Zm00025a047333
Brachypodium KQJ90585
Barley HORVU5Hr1G069990.4 , HORVU5Hr1G069990.1 , HORVU5Hr1G069990.2 , HORVU5Hr1G069990.3 , HORVU2Hr1G079170.1
Wheat TraesCS2A02G318300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G233000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G340500 LSM domain containing protein, expressed K11099: SNRPG, small nuclear ribonucleoprotein G
2 Sobic.008G189300 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
3 Sobic.006G108400 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
4 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
5 Sobic.004G225500 bolA, putative, expressed K05527: BolA family transcriptional regulator, general stress-responsive regulator
6 Sobic.009G008900 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
7 Sobic.003G350300 ubiquitin-conjugating enzyme, putative, expressed K10575: UBE2G1, ubiquitin-conjugating enzyme E2 G1
8 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
9 Sobic.006G141500 expressed protein -
10 Sobic.001G048832 - -
11 Sobic.004G276100 expressed protein -
12 Sobic.006G106800 - -
13 Sobic.002G345300 ZOS7-05 - C2H2 zinc finger protein, expressed -
14 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -
15 Sobic.001G288800 nonsense-mediated mRNA decay protein 3, putative, expressed K07562: nonsense-mediated mRNA decay protein 3
16 Sobic.009G139400 expressed protein -
17 Sobic.008G111400 membrane protein, putative, expressed -
18 Sobic.001G177800 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
19 Sobic.003G393700 zinc finger, RING-type, putative, expressed -
20 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e


Gene co-expression network
sample Sobic002G233000 Sobic002G233000 Sobic001G340500 Sobic001G340500 Sobic002G233000--Sobic001G340500 Sobic008G189300 Sobic008G189300 Sobic002G233000--Sobic008G189300 Sobic006G108400 Sobic006G108400 Sobic002G233000--Sobic006G108400 Sobic004G272800 Sobic004G272800 Sobic002G233000--Sobic004G272800 Sobic004G225500 Sobic004G225500 Sobic002G233000--Sobic004G225500 Sobic009G008900 Sobic009G008900 Sobic002G233000--Sobic009G008900 Sobic003G350300 Sobic003G350300 Sobic002G233000--Sobic003G350300 Sobic002G081600 Sobic002G081600 Sobic002G233000--Sobic002G081600 Sobic006G141500 Sobic006G141500 Sobic002G233000--Sobic006G141500 Sobic009G166500 Sobic009G166500 Sobic001G340500--Sobic009G166500 Sobic001G018800 Sobic001G018800 Sobic001G340500--Sobic001G018800 Sobic001G340500--Sobic002G081600 Sobic005G110800 Sobic005G110800 Sobic001G340500--Sobic005G110800 Sobic006G137100 Sobic006G137100 Sobic001G340500--Sobic006G137100 Sobic009G163800 Sobic009G163800 Sobic001G340500--Sobic009G163800 Sobic003G346600 Sobic003G346600 Sobic001G340500--Sobic003G346600 Sobic006G147000 Sobic006G147000 Sobic001G340500--Sobic006G147000 Sobic003G018600 Sobic003G018600 Sobic001G340500--Sobic003G018600 Sobic008G189300--Sobic004G225500 Sobic008G189300--Sobic004G272800 Sobic001G224400 Sobic001G224400 Sobic008G189300--Sobic001G224400 Sobic002G153500 Sobic002G153500 Sobic008G189300--Sobic002G153500 Sobic010G154700 Sobic010G154700 Sobic008G189300--Sobic010G154700 Sobic001G132100 Sobic001G132100 Sobic008G189300--Sobic001G132100 Sobic002G187500 Sobic002G187500 Sobic008G189300--Sobic002G187500 Sobic001G048832 Sobic001G048832 Sobic008G189300--Sobic001G048832 Sobic008G189300--Sobic001G340500 Sobic004G049900 Sobic004G049900 Sobic006G108400--Sobic004G049900 Sobic003G253000 Sobic003G253000 Sobic006G108400--Sobic003G253000 Sobic008G161800 Sobic008G161800 Sobic006G108400--Sobic008G161800 Sobic009G185800 Sobic009G185800 Sobic006G108400--Sobic009G185800 Sobic001G415500 Sobic001G415500 Sobic006G108400--Sobic001G415500 Sobic006G108400--Sobic004G272800 Sobic001G459200 Sobic001G459200 Sobic006G108400--Sobic001G459200 Sobic004G050000 Sobic004G050000 Sobic006G108400--Sobic004G050000 Sobic002G267500 Sobic002G267500 Sobic006G108400--Sobic002G267500 Sobic004G272800--Sobic002G267500 Sobic001G281400 Sobic001G281400 Sobic004G272800--Sobic001G281400 Sobic004G272800--Sobic003G253000 Sobic004G272800--Sobic001G048832 Sobic002G190900 Sobic002G190900 Sobic004G272800--Sobic002G190900 Sobic002G345300 Sobic002G345300 Sobic004G272800--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic004G272800--Sobic002G046100 Sobic010G041600 Sobic010G041600 Sobic004G272800--Sobic010G041600 Sobic005G188100 Sobic005G188100 Sobic004G272800--Sobic005G188100 Sobic004G225500--Sobic008G189300 Sobic002G155500 Sobic002G155500 Sobic004G225500--Sobic002G155500 Sobic004G225500--Sobic004G272800 Sobic004G300900 Sobic004G300900 Sobic004G225500--Sobic004G300900 Sobic004G225500--Sobic001G048832 Sobic004G225500--Sobic001G340500 Sobic004G225500--Sobic002G153500 Sobic004G225500--Sobic010G154700 Sobic010G121300 Sobic010G121300 Sobic004G225500--Sobic010G121300 Sobic006G173900 Sobic006G173900 Sobic009G008900--Sobic006G173900 Sobic001G119400 Sobic001G119400 Sobic009G008900--Sobic001G119400 Sobic006G275200 Sobic006G275200 Sobic009G008900--Sobic006G275200 Sobic002G393000 Sobic002G393000 Sobic009G008900--Sobic002G393000 Sobic008G136400 Sobic008G136400 Sobic009G008900--Sobic008G136400 Sobic001G423800 Sobic001G423800 Sobic009G008900--Sobic001G423800 Sobic001G177800 Sobic001G177800 Sobic009G008900--Sobic001G177800 Sobic002G414600 Sobic002G414600 Sobic009G008900--Sobic002G414600 Sobic001G038900 Sobic001G038900 Sobic009G008900--Sobic001G038900 Sobic004G187900 Sobic004G187900 Sobic003G350300--Sobic004G187900 Sobic003G350300--Sobic002G345300 Sobic003G350300--Sobic002G046100 Sobic003G285800 Sobic003G285800 Sobic003G350300--Sobic003G285800 Sobic003G350300--Sobic001G281400 Sobic004G321300 Sobic004G321300 Sobic003G350300--Sobic004G321300 Sobic010G274900 Sobic010G274900 Sobic003G350300--Sobic010G274900 Sobic010G086200 Sobic010G086200 Sobic003G350300--Sobic010G086200 Sobic003G181500 Sobic003G181500 Sobic003G350300--Sobic003G181500 Sobic009G050300 Sobic009G050300 Sobic002G081600--Sobic009G050300 Sobic006G116700 Sobic006G116700 Sobic002G081600--Sobic006G116700 Sobic002G081600--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic002G081600--Sobic009G215200 Sobic001G374700 Sobic001G374700 Sobic002G081600--Sobic001G374700 Sobic002G200600 Sobic002G200600 Sobic002G081600--Sobic002G200600 Sobic006G067800 Sobic006G067800 Sobic002G081600--Sobic006G067800 Sobic002G081600--Sobic009G166500 Sobic001G403500 Sobic001G403500 Sobic002G081600--Sobic001G403500 Sobic006G141500--Sobic003G253000 Sobic010G243200 Sobic010G243200 Sobic006G141500--Sobic010G243200 Sobic002G282400 Sobic002G282400 Sobic006G141500--Sobic002G282400 Sobic002G218000 Sobic002G218000 Sobic006G141500--Sobic002G218000 Sobic006G141500--Sobic004G300900 Sobic006G141500--Sobic003G350300 Sobic006G141500--Sobic008G161800 Sobic004G248800 Sobic004G248800 Sobic006G141500--Sobic004G248800 Sobic006G141500--Sobic002G046100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.