Gene annotation
Transcriptome id Sobic.008G111400.1
Synonym Sb08g016540
Functional annotation membrane protein, putative, expressed
UniProt C5YP64
Pfam PF06624
Panther DB PTHR15601 PTHR15601:SF5
NCBI CDD KOG3491; Predicted membrane protein
KEGG Orthology -
Gene Ontology GO:0005783; endoplasmic reticulum


Orthologs (automatic annotation)
TAIR AT1G27350 : Ribosome associated membrane protein RAMP4
RAP-DB (Rice) LOC_Os11g41875.2 : membrane protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ86574
Barley HORVU5Hr1G028000.1 , HORVU5Hr1G028000.2 , HORVU5Hr1G028000.5 , HORVU5Hr1G028000.4
Wheat -
Populus -


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cDNA sequences
Sobic.008G111400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4
2 Sobic.010G154700 - -
3 Sobic.009G122100 tetratricopeptide repeat containing protein, putative, expressed K17969: FIS1, TTC11, mitochondrial fission 1 protein
4 Sobic.001G286300 - -
5 Sobic.003G350300 ubiquitin-conjugating enzyme, putative, expressed K10575: UBE2G1, ubiquitin-conjugating enzyme E2 G1
6 Sobic.002G116200 adenylate kinase isoenzyme 6, putative, expressed K18532: AK6, adenylate kinase
7 Sobic.008G189300 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
8 Sobic.007G096700 POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
9 Sobic.001G132100 expressed protein -
10 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
11 Sobic.006G141500 expressed protein -
12 Sobic.001G134400 CHCH domain containing protein, expressed -
13 Sobic.010G153100 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31
14 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
15 Sobic.009G176000 expressed protein K03945: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 1
16 Sobic.001G048832 - -
17 Sobic.001G340500 LSM domain containing protein, expressed K11099: SNRPG, small nuclear ribonucleoprotein G
18 Sobic.004G280700 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17781: mitochondrial import inner membrane translocase subunit TIM13
19 Sobic.006G081100 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
20 Sobic.001G034700 actin-depolymerizing factor, putative, expressed K05765: cofilin


Gene co-expression network
sample Sobic008G111400 Sobic008G111400 Sobic001G128400 Sobic001G128400 Sobic008G111400--Sobic001G128400 Sobic010G154700 Sobic010G154700 Sobic008G111400--Sobic010G154700 Sobic009G122100 Sobic009G122100 Sobic008G111400--Sobic009G122100 Sobic001G286300 Sobic001G286300 Sobic008G111400--Sobic001G286300 Sobic003G350300 Sobic003G350300 Sobic008G111400--Sobic003G350300 Sobic002G116200 Sobic002G116200 Sobic008G111400--Sobic002G116200 Sobic008G189300 Sobic008G189300 Sobic008G111400--Sobic008G189300 Sobic007G096700 Sobic007G096700 Sobic008G111400--Sobic007G096700 Sobic001G132100 Sobic001G132100 Sobic008G111400--Sobic001G132100 Sobic005G111100 Sobic005G111100 Sobic001G128400--Sobic005G111100 Sobic003G129800 Sobic003G129800 Sobic001G128400--Sobic003G129800 Sobic010G204500 Sobic010G204500 Sobic001G128400--Sobic010G204500 Sobic006G081100 Sobic006G081100 Sobic001G128400--Sobic006G081100 Sobic003G249700 Sobic003G249700 Sobic001G128400--Sobic003G249700 Sobic002G049300 Sobic002G049300 Sobic001G128400--Sobic002G049300 Sobic010G054200 Sobic010G054200 Sobic001G128400--Sobic010G054200 Sobic003G280700 Sobic003G280700 Sobic001G128400--Sobic003G280700 Sobic003G109600 Sobic003G109600 Sobic001G128400--Sobic003G109600 Sobic001G048832 Sobic001G048832 Sobic010G154700--Sobic001G048832 Sobic010G154700--Sobic001G132100 Sobic007G051000 Sobic007G051000 Sobic010G154700--Sobic007G051000 Sobic001G074700 Sobic001G074700 Sobic010G154700--Sobic001G074700 Sobic003G155400 Sobic003G155400 Sobic010G154700--Sobic003G155400 Sobic009G119900 Sobic009G119900 Sobic010G154700--Sobic009G119900 Sobic002G190900 Sobic002G190900 Sobic010G154700--Sobic002G190900 Sobic002G398901 Sobic002G398901 Sobic010G154700--Sobic002G398901 Sobic009G176000 Sobic009G176000 Sobic010G154700--Sobic009G176000 Sobic009G122100--Sobic007G096700 Sobic002G257400 Sobic002G257400 Sobic009G122100--Sobic002G257400 Sobic001G461900 Sobic001G461900 Sobic009G122100--Sobic001G461900 Sobic009G122100--Sobic008G111400 Sobic010G266300 Sobic010G266300 Sobic009G122100--Sobic010G266300 Sobic001G224400 Sobic001G224400 Sobic009G122100--Sobic001G224400 Sobic002G222900 Sobic002G222900 Sobic009G122100--Sobic002G222900 Sobic007G152400 Sobic007G152400 Sobic009G122100--Sobic007G152400 Sobic001G058100 Sobic001G058100 Sobic009G122100--Sobic001G058100 Sobic002G296200 Sobic002G296200 Sobic001G286300--Sobic002G296200 Sobic008G094600 Sobic008G094600 Sobic001G286300--Sobic008G094600 Sobic006G013000 Sobic006G013000 Sobic001G286300--Sobic006G013000 Sobic001G286300--Sobic001G128400 Sobic001G286300--Sobic003G129800 Sobic002G309700 Sobic002G309700 Sobic001G286300--Sobic002G309700 Sobic009G001900 Sobic009G001900 Sobic001G286300--Sobic009G001900 Sobic003G296800 Sobic003G296800 Sobic001G286300--Sobic003G296800 Sobic007G161700 Sobic007G161700 Sobic001G286300--Sobic007G161700 Sobic004G187900 Sobic004G187900 Sobic003G350300--Sobic004G187900 Sobic002G345300 Sobic002G345300 Sobic003G350300--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic003G350300--Sobic002G046100 Sobic003G285800 Sobic003G285800 Sobic003G350300--Sobic003G285800 Sobic001G281400 Sobic001G281400 Sobic003G350300--Sobic001G281400 Sobic004G321300 Sobic004G321300 Sobic003G350300--Sobic004G321300 Sobic010G274900 Sobic010G274900 Sobic003G350300--Sobic010G274900 Sobic010G086200 Sobic010G086200 Sobic003G350300--Sobic010G086200 Sobic003G181500 Sobic003G181500 Sobic003G350300--Sobic003G181500 Sobic003G362400 Sobic003G362400 Sobic002G116200--Sobic003G362400 Sobic002G116200--Sobic005G111100 Sobic005G157200 Sobic005G157200 Sobic002G116200--Sobic005G157200 Sobic002G078400 Sobic002G078400 Sobic002G116200--Sobic002G078400 Sobic003G321700 Sobic003G321700 Sobic002G116200--Sobic003G321700 Sobic001G445800 Sobic001G445800 Sobic002G116200--Sobic001G445800 Sobic004G300900 Sobic004G300900 Sobic002G116200--Sobic004G300900 Sobic002G116200--Sobic001G128400 Sobic001G331900 Sobic001G331900 Sobic002G116200--Sobic001G331900 Sobic004G225500 Sobic004G225500 Sobic008G189300--Sobic004G225500 Sobic004G272800 Sobic004G272800 Sobic008G189300--Sobic004G272800 Sobic008G189300--Sobic001G224400 Sobic002G153500 Sobic002G153500 Sobic008G189300--Sobic002G153500 Sobic008G189300--Sobic010G154700 Sobic008G189300--Sobic001G132100 Sobic002G187500 Sobic002G187500 Sobic008G189300--Sobic002G187500 Sobic008G189300--Sobic001G048832 Sobic001G340500 Sobic001G340500 Sobic008G189300--Sobic001G340500 Sobic009G198500 Sobic009G198500 Sobic007G096700--Sobic009G198500 Sobic004G327300 Sobic004G327300 Sobic007G096700--Sobic004G327300 Sobic007G096700--Sobic009G122100 Sobic001G501200 Sobic001G501200 Sobic007G096700--Sobic001G501200 Sobic001G005900 Sobic001G005900 Sobic007G096700--Sobic001G005900 Sobic002G400000 Sobic002G400000 Sobic007G096700--Sobic002G400000 Sobic004G130900 Sobic004G130900 Sobic007G096700--Sobic004G130900 Sobic001G175800 Sobic001G175800 Sobic007G096700--Sobic001G175800 Sobic007G096700--Sobic004G300900 Sobic001G132100--Sobic001G048832 Sobic001G132100--Sobic010G154700 Sobic001G132100--Sobic002G190900 Sobic005G188100 Sobic005G188100 Sobic001G132100--Sobic005G188100 Sobic001G132100--Sobic007G051000 Sobic001G132100--Sobic002G398901 Sobic001G132100--Sobic009G119900 Sobic010G018400 Sobic010G018400 Sobic001G132100--Sobic010G018400 Sobic001G132100--Sobic004G272800
Octagon: transcription factors


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