Gene annotation
Transcriptome id Sobic.002G256601.1
Synonym -
Functional annotation -
UniProt A0A1W0W5X0
Pfam PF13920
Panther DB PTHR12183 PTHR12183:SF17
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G25030 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os09g32730.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a039337 , Zm00025a005239 , Zm00025a026288 , Zm00025a047562 , Zm00025a014293
Brachypodium -
Barley HORVU7Hr1G053470.4 , HORVU7Hr1G053470.5 , HORVU7Hr1G053470.6 , HORVU7Hr1G053470.7 , HORVU7Hr1G053470.3
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G165650 - -
2 Sobic.004G277300 RING-H2 finger protein ATL3J, putative, expressed K10663: E3 ubiquitin-protein ligase ATL4
3 Sobic.005G194200 EARLY flowering protein, putative, expressed -
4 Sobic.010G210700 NAD dependent epimerase/dehydratase family protein, putative, expressed -
5 Sobic.008G086401 - -
6 Sobic.008G022600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@E2F-related protein, putative, expressed -
7 Sobic.002G349400 - -
8 Sobic.007G157800 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@Gibberellin receptor GID1L2("PubMedID : 26759170,PubMedID : 24597475")@gibberellin receptor GID1L2, putative, expressed -
9 Sobic.010G120800 Leucine-rich repeat receptor-like serine/threonine/tyrosine protein kinase(PubMedID : 31721651)@protein kinase domain containing protein, expressed -
10 Sobic.010G060000 - -
11 Sobic.008G181801 - -
12 Sobic.005G017700 jacalin-like lectin domain containing protein, expressed -
13 Sobic.009G241500 expressed protein -
14 Sobic.001G340700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@EARLY flowering protein, putative, expressed -
15 Sobic.001G315800 shikimate/quinate 5-dehydrogenase, putative, expressed -
16 Sobic.009G075100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@lachrymatory factor synthase, putative, expressed -
17 Sobic.005G133166 - -
18 Sobic.006G045000 drought-induced protein 1, putative, expressed -
19 Sobic.005G085500 - -
20 Sobic.K044407 - -


Gene co-expression network
sample Sobic002G256601 Sobic002G256601 Sobic006G165650 Sobic006G165650 Sobic002G256601--Sobic006G165650 Sobic004G277300 Sobic004G277300 Sobic002G256601--Sobic004G277300 Sobic005G194200 Sobic005G194200 Sobic002G256601--Sobic005G194200 Sobic010G210700 Sobic010G210700 Sobic002G256601--Sobic010G210700 Sobic008G086401 Sobic008G086401 Sobic002G256601--Sobic008G086401 Sobic008G022600 Sobic008G022600 Sobic002G256601--Sobic008G022600 Sobic002G349400 Sobic002G349400 Sobic002G256601--Sobic002G349400 Sobic007G157800 Sobic007G157800 Sobic002G256601--Sobic007G157800 Sobic010G120800 Sobic010G120800 Sobic002G256601--Sobic010G120800 Sobic006G165650--Sobic007G157800 Sobic002G040500 Sobic002G040500 Sobic006G165650--Sobic002G040500 Sobic009G206400 Sobic009G206400 Sobic006G165650--Sobic009G206400 Sobic007G207300 Sobic007G207300 Sobic006G165650--Sobic007G207300 Sobic008G175700 Sobic008G175700 Sobic006G165650--Sobic008G175700 Sobic002G175550 Sobic002G175550 Sobic006G165650--Sobic002G175550 Sobic001G177200 Sobic001G177200 Sobic006G165650--Sobic001G177200 Sobic005G097700 Sobic005G097700 Sobic006G165650--Sobic005G097700 Sobic001G256900 Sobic001G256900 Sobic006G165650--Sobic001G256900 Sobic001G508700 Sobic001G508700 Sobic004G277300--Sobic001G508700 Sobic004G277300--Sobic002G256601 Sobic001G484500 Sobic001G484500 Sobic004G277300--Sobic001G484500 Sobic004G277300--Sobic006G165650 Sobic001G280300 Sobic001G280300 Sobic004G277300--Sobic001G280300 Sobic003G018400 Sobic003G018400 Sobic004G277300--Sobic003G018400 Sobic002G041900 Sobic002G041900 Sobic004G277300--Sobic002G041900 Sobic005G060400 Sobic005G060400 Sobic004G277300--Sobic005G060400 Sobic002G248600 Sobic002G248600 Sobic004G277300--Sobic002G248600 Sobic006G060800 Sobic006G060800 Sobic005G194200--Sobic006G060800 Sobic009G255100 Sobic009G255100 Sobic005G194200--Sobic009G255100 Sobic009G205600 Sobic009G205600 Sobic005G194200--Sobic009G205600 Sobic002G362100 Sobic002G362100 Sobic005G194200--Sobic002G362100 Sobic001G145050 Sobic001G145050 Sobic005G194200--Sobic001G145050 Sobic005G045200 Sobic005G045200 Sobic005G194200--Sobic005G045200 Sobic004G217700 Sobic004G217700 Sobic005G194200--Sobic004G217700 Sobic001G340700 Sobic001G340700 Sobic005G194200--Sobic001G340700 Sobic005G194200--Sobic010G120800 Sobic005G133166 Sobic005G133166 Sobic010G210700--Sobic005G133166 Sobic006G168000 Sobic006G168000 Sobic010G210700--Sobic006G168000 Sobic005G082700 Sobic005G082700 Sobic010G210700--Sobic005G082700 Sobic004G187300 Sobic004G187300 Sobic010G210700--Sobic004G187300 Sobic002G173900 Sobic002G173900 Sobic010G210700--Sobic002G173900 Sobic009G241500 Sobic009G241500 Sobic010G210700--Sobic009G241500 Sobic008G181801 Sobic008G181801 Sobic010G210700--Sobic008G181801 Sobic006G246200 Sobic006G246200 Sobic010G210700--Sobic006G246200 Sobic002G354400 Sobic002G354400 Sobic010G210700--Sobic002G354400 Sobic003G022800 Sobic003G022800 Sobic008G086401--Sobic003G022800 Sobic006G212000 Sobic006G212000 Sobic008G086401--Sobic006G212000 Sobic004G357900 Sobic004G357900 Sobic008G086401--Sobic004G357900 Sobic004G356600 Sobic004G356600 Sobic008G086401--Sobic004G356600 Sobic008G086401--Sobic005G097700 Sobic008G086401--Sobic001G256900 Sobic003G222400 Sobic003G222400 Sobic008G086401--Sobic003G222400 Sobic009G070900 Sobic009G070900 Sobic008G086401--Sobic009G070900 Sobic007G169000 Sobic007G169000 Sobic008G086401--Sobic007G169000 Sobic001G077100 Sobic001G077100 Sobic008G022600--Sobic001G077100 Sobic010G060000 Sobic010G060000 Sobic008G022600--Sobic010G060000 Sobic004G270400 Sobic004G270400 Sobic008G022600--Sobic004G270400 Sobic007G136600 Sobic007G136600 Sobic008G022600--Sobic007G136600 Sobic008G022600--Sobic009G206400 Sobic001G531000 Sobic001G531000 Sobic008G022600--Sobic001G531000 Sobic002G226100 Sobic002G226100 Sobic008G022600--Sobic002G226100 Sobic008G022600--Sobic010G120800 Sobic001G281800 Sobic001G281800 Sobic008G022600--Sobic001G281800 Sobic006G045000 Sobic006G045000 Sobic002G349400--Sobic006G045000 Sobic004G209500 Sobic004G209500 Sobic002G349400--Sobic004G209500 Sobic001G315800 Sobic001G315800 Sobic002G349400--Sobic001G315800 Sobic002G349400--Sobic008G181801 Sobic005G226100 Sobic005G226100 Sobic002G349400--Sobic005G226100 Sobic002G349400--Sobic009G241500 Sobic009G216050 Sobic009G216050 Sobic002G349400--Sobic009G216050 Sobic002G253400 Sobic002G253400 Sobic002G349400--Sobic002G253400 Sobic001G320700 Sobic001G320700 Sobic002G349400--Sobic001G320700 Sobic007G157800--Sobic006G165650 Sobic007G157800--Sobic007G207300 Sobic007G070600 Sobic007G070600 Sobic007G157800--Sobic007G070600 Sobic007G157800--Sobic001G256900 Sobic007G157800--Sobic005G097700 Sobic007G157800--Sobic002G175550 Sobic007G157800--Sobic001G177200 Sobic007G157800--Sobic002G040500 Sobic003G336400 Sobic003G336400 Sobic007G157800--Sobic003G336400 Sobic004G195800 Sobic004G195800 Sobic010G120800--Sobic004G195800 Sobic002G209100 Sobic002G209100 Sobic010G120800--Sobic002G209100 Sobic005G085500 Sobic005G085500 Sobic010G120800--Sobic005G085500 Sobic002G041800 Sobic002G041800 Sobic010G120800--Sobic002G041800 Sobic009G252100 Sobic009G252100 Sobic010G120800--Sobic009G252100 Sobic010G120800--Sobic006G060800 Sobic004G078600 Sobic004G078600 Sobic010G120800--Sobic004G078600 Sobic008G060300 Sobic008G060300 Sobic010G120800--Sobic008G060300 Sobic001G201800 Sobic001G201800 Sobic010G120800--Sobic001G201800
Octagon: transcription factors


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