Gene annotation
Transcriptome id Sobic.002G279500.2,Sobic.002G279500.1
Synonym SYT1, ATSYTA, Sb02g031220, NTMC2T1.1, SYTA, NTMC2TYPE1.1
Functional annotation NTMC2Type1.2 protein, putative, expressed
UniProt C5X6V5
Pfam PF17047 PF00168 PF00168 PF17047
Panther DB PTHR10774 PTHR10774:SF50 PTHR10774:SF50 PTHR10774
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G20990 : synaptotagmin A
RAP-DB (Rice) LOC_Os09g36770.2,LOC_Os09g36770.3 : NTMC2Type1.2 protein, putative, expressed
MaizeGDB (Corn) Zm00025a049330 , Zm00025a014460 , Zm00025a003541
Brachypodium KQJ91238
Barley HORVU5Hr1G084010.8 , HORVU5Hr1G084010.9 , HORVU5Hr1G084010.1 , HORVU5Hr1G084010.2 , HORVU5Hr1G084010.4 , HORVU5Hr1G084010.5 , HORVU5Hr1G084010.6 , HORVU5Hr1G084010.7 , HORVU5Hr1G084010.3 , HORVU5Hr1G084010.12 , HORVU5Hr1G084010.10 , HORVU5Hr1G084010.11
Wheat TraesCS5B02G330600 , TraesCS5B02G330600 , TraesCS5A02G330400 , TraesCS5A02G330400 , TraesCS5A02G330400 , TraesCS5A02G330400 , TraesCS5D02G336200
Populus PNT21186 , PNT21187 , PNT21185 , PNT41765 , PNT41766 , PNT41767


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cDNA sequences
Sobic.002G279500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G108600 drought induced 19 protein, putative, expressed -
2 Sobic.007G056700 AP2/EREBP transcription factor BABY BOOM, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
3 Sobic.002G014800 expressed protein -
4 Sobic.003G113300 expressed protein -
5 Sobic.001G085700 STE_PAK_Ste20_KHSh_GCKh_HPKh.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
6 Sobic.001G472100 frigida, putative, expressed -
7 Sobic.005G216800 RNA recognition motif containing protein, expressed -
8 Sobic.003G005900 abscisic acid insensitive 8, putative, expressed -
9 Sobic.004G145600 expressed protein -
10 Sobic.005G040900 zinc finger, C3HC4 type domain containing protein, expressed K10601: SYVN1, E3 ubiquitin-protein ligase synoviolin
11 Sobic.009G000400 expressed protein -
12 Sobic.002G342300 exostosin family domain containing protein, expressed -
13 Sobic.007G000400 B3 DNA binding domain containing protein, expressed -
14 Sobic.002G388000 SNARE associated Golgi protein, putative, expressed -
15 Sobic.004G345400 WD domain, G-beta repeat domain containing protein, expressed K05757: actin related protein 2/3 complex, subunit 1A/1B
16 Sobic.010G237650 - -
17 Sobic.001G533100 GHMP kinases ATP-binding protein, putative, expressed K05305: fucokinase
18 Sobic.003G304800 OsRhmbd4 - Putative Rhomboid homologue, expressed -
19 Sobic.009G126600 cyclin-dependent kinase D-1, putative, expressed K02202: cyclin-dependent kinase 7
20 Sobic.006G184100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@dehydration response related protein, putative, expressed -


Gene co-expression network
sample Sobic002G279500 Sobic002G279500 Sobic009G108600 Sobic009G108600 Sobic002G279500--Sobic009G108600 Sobic007G056700 Sobic007G056700 Sobic002G279500--Sobic007G056700 Sobic002G014800 Sobic002G014800 Sobic002G279500--Sobic002G014800 Sobic003G113300 Sobic003G113300 Sobic002G279500--Sobic003G113300 Sobic001G085700 Sobic001G085700 Sobic002G279500--Sobic001G085700 Sobic001G472100 Sobic001G472100 Sobic002G279500--Sobic001G472100 Sobic005G216800 Sobic005G216800 Sobic002G279500--Sobic005G216800 Sobic003G005900 Sobic003G005900 Sobic002G279500--Sobic003G005900 Sobic004G145600 Sobic004G145600 Sobic002G279500--Sobic004G145600 Sobic009G108600--Sobic007G056700 Sobic006G244300 Sobic006G244300 Sobic009G108600--Sobic006G244300 Sobic004G345400 Sobic004G345400 Sobic009G108600--Sobic004G345400 Sobic003G205501 Sobic003G205501 Sobic009G108600--Sobic003G205501 Sobic006G165000 Sobic006G165000 Sobic009G108600--Sobic006G165000 Sobic009G126600 Sobic009G126600 Sobic009G108600--Sobic009G126600 Sobic003G241200 Sobic003G241200 Sobic009G108600--Sobic003G241200 Sobic009G108600--Sobic001G472100 Sobic001G408700 Sobic001G408700 Sobic009G108600--Sobic001G408700 Sobic010G096000 Sobic010G096000 Sobic007G056700--Sobic010G096000 Sobic007G056700--Sobic003G241200 Sobic007G056700--Sobic009G126600 Sobic001G267900 Sobic001G267900 Sobic007G056700--Sobic001G267900 Sobic001G518400 Sobic001G518400 Sobic007G056700--Sobic001G518400 Sobic007G056700--Sobic003G205501 Sobic009G074700 Sobic009G074700 Sobic007G056700--Sobic009G074700 Sobic007G056700--Sobic001G085700 Sobic010G204400 Sobic010G204400 Sobic007G056700--Sobic010G204400 Sobic002G014800--Sobic003G113300 Sobic002G014800--Sobic003G005900 Sobic002G014800--Sobic004G345400 Sobic009G129600 Sobic009G129600 Sobic002G014800--Sobic009G129600 Sobic003G016500 Sobic003G016500 Sobic002G014800--Sobic003G016500 Sobic006G103700 Sobic006G103700 Sobic002G014800--Sobic006G103700 Sobic005G040900 Sobic005G040900 Sobic002G014800--Sobic005G040900 Sobic001G123600 Sobic001G123600 Sobic002G014800--Sobic001G123600 Sobic005G114500 Sobic005G114500 Sobic002G014800--Sobic005G114500 Sobic009G122500 Sobic009G122500 Sobic003G113300--Sobic009G122500 Sobic002G296400 Sobic002G296400 Sobic003G113300--Sobic002G296400 Sobic003G113300--Sobic002G014800 Sobic001G474400 Sobic001G474400 Sobic003G113300--Sobic001G474400 Sobic001G030000 Sobic001G030000 Sobic003G113300--Sobic001G030000 Sobic003G113300--Sobic005G114500 Sobic007G030100 Sobic007G030100 Sobic003G113300--Sobic007G030100 Sobic003G393200 Sobic003G393200 Sobic003G113300--Sobic003G393200 Sobic001G051400 Sobic001G051400 Sobic003G113300--Sobic001G051400 Sobic001G085700--Sobic001G518400 Sobic006G180700 Sobic006G180700 Sobic001G085700--Sobic006G180700 Sobic006G138000 Sobic006G138000 Sobic001G085700--Sobic006G138000 Sobic001G335900 Sobic001G335900 Sobic001G085700--Sobic001G335900 Sobic001G170100 Sobic001G170100 Sobic001G085700--Sobic001G170100 Sobic001G085700--Sobic007G056700 Sobic010G275500 Sobic010G275500 Sobic001G085700--Sobic010G275500 Sobic001G085700--Sobic009G074700 Sobic001G085700--Sobic001G267900 Sobic001G472100--Sobic005G040900 Sobic009G059400 Sobic009G059400 Sobic001G472100--Sobic009G059400 Sobic005G198200 Sobic005G198200 Sobic001G472100--Sobic005G198200 Sobic009G125000 Sobic009G125000 Sobic001G472100--Sobic009G125000 Sobic008G058800 Sobic008G058800 Sobic001G472100--Sobic008G058800 Sobic001G472100--Sobic004G345400 Sobic001G472100--Sobic009G129600 Sobic007G139400 Sobic007G139400 Sobic001G472100--Sobic007G139400 Sobic003G354100 Sobic003G354100 Sobic001G472100--Sobic003G354100 Sobic006G237500 Sobic006G237500 Sobic005G216800--Sobic006G237500 Sobic005G123400 Sobic005G123400 Sobic005G216800--Sobic005G123400 Sobic002G342300 Sobic002G342300 Sobic005G216800--Sobic002G342300 Sobic010G237650 Sobic010G237650 Sobic005G216800--Sobic010G237650 Sobic002G235900 Sobic002G235900 Sobic005G216800--Sobic002G235900 Sobic009G102000 Sobic009G102000 Sobic005G216800--Sobic009G102000 Sobic003G397100 Sobic003G397100 Sobic005G216800--Sobic003G397100 Sobic003G194800 Sobic003G194800 Sobic005G216800--Sobic003G194800 Sobic006G170900 Sobic006G170900 Sobic005G216800--Sobic006G170900 Sobic003G005900--Sobic005G114500 Sobic003G130900 Sobic003G130900 Sobic003G005900--Sobic003G130900 Sobic006G265600 Sobic006G265600 Sobic003G005900--Sobic006G265600 Sobic003G293000 Sobic003G293000 Sobic003G005900--Sobic003G293000 Sobic003G005900--Sobic001G474400 Sobic004G151200 Sobic004G151200 Sobic003G005900--Sobic004G151200 Sobic001G012900 Sobic001G012900 Sobic003G005900--Sobic001G012900 Sobic003G005900--Sobic002G014800 Sobic009G207200 Sobic009G207200 Sobic003G005900--Sobic009G207200 Sobic007G036800 Sobic007G036800 Sobic004G145600--Sobic007G036800 Sobic003G010900 Sobic003G010900 Sobic004G145600--Sobic003G010900 Sobic004G084400 Sobic004G084400 Sobic004G145600--Sobic004G084400 Sobic004G145600--Sobic003G005900 Sobic004G145600--Sobic005G040900 Sobic003G062400 Sobic003G062400 Sobic004G145600--Sobic003G062400 Sobic007G148400 Sobic007G148400 Sobic004G145600--Sobic007G148400 Sobic003G222700 Sobic003G222700 Sobic004G145600--Sobic003G222700 Sobic010G059700 Sobic010G059700 Sobic004G145600--Sobic010G059700
Octagon: transcription factors


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