Gene annotation
Transcriptome id Sobic.002G379000.1
Synonym ATCOX6B2, Sb02g039590, COX6B
Functional annotation cytochrome c oxidase subunit, putative, expressed
UniProt A0A1B6QFL9
Pfam PF02297
Panther DB PTHR11387 PTHR11387:SF15
NCBI CDD -
KEGG Orthology K02267; cytochrome c oxidase subunit 6b
Gene Ontology GO:0005739; mitochondrion GO:0004129cytochrome-c oxidase activity


Orthologs (automatic annotation)
TAIR AT1G22450 : cytochrome C oxidase 6B
RAP-DB (Rice) LOC_Os07g42910.1 : cytochrome c oxidase subunit, putative, expressed
MaizeGDB (Corn) Zm00025a002727 , Zm00025a052113
Brachypodium KQK15212
Barley HORVU2Hr1G029990.3 , HORVU2Hr1G029990.2 , HORVU2Hr1G029990.1 , HORVU2Hr1G029990.6 , HORVU2Hr1G029990.5 , HORVU2Hr1G029990.4
Wheat TraesCS2B02G189900 , TraesCS2A02G164000 , TraesCS2D02G171000
Populus -


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cDNA sequences
Sobic.002G379000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G050600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.003G296100 DUF623 domain containing protein, expressed -
3 Sobic.010G101300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@dehydrogenase E1 component domain containing protein, expressed K00161: PDHA, pyruvate dehydrogenase E1 component alpha subunit
4 Sobic.002G151200 seed maturation protein LEA 4, putative, expressed -
5 Sobic.005G138500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.003G194400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
7 Sobic.004G243300 expressed protein -
8 Sobic.009G168800 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@phosphatidylethanolamine-binding protein, putative, expressed K06910: PEBP1, phosphatidylethanolamine-binding protein
9 Sobic.001G200700 expressed protein -
10 Sobic.006G269501 - -
11 Sobic.003G292400 NADP-dependent malic enzyme(PubMedID : 26186930)@NADP-malic enzyme(PubMedID : 26904072)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@C4 carbon fixation(PubMedID : 28620409)@NADP-dependent malic enzyme, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
12 Sobic.006G114700 Up-reguralion under drought(PubMedID : 24916767)@phosphofructokinase 2("PubMedID : 26759170,PubMedID : 24597475")@phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
13 Sobic.001G307000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.001G354800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.009G171400 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
16 Sobic.006G104000 ethylene-insensitive 3, putative, expressed K14514: ethylene-insensitive protein 3
17 Sobic.004G047900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed -
18 Sobic.002G132500 - -
19 Sobic.003G011400 similar to Os01g0225600 protein(PubMedID : 29862293)@late embryogenesis abundant protein, putative, expressed -
20 Sobic.001G492000 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@embryonic protein DC-8, putative, expressed -


Gene co-expression network
sample Sobic002G379000 Sobic002G379000 Sobic006G050600 Sobic006G050600 Sobic002G379000--Sobic006G050600 Sobic003G296100 Sobic003G296100 Sobic002G379000--Sobic003G296100 Sobic010G101300 Sobic010G101300 Sobic002G379000--Sobic010G101300 Sobic002G151200 Sobic002G151200 Sobic002G379000--Sobic002G151200 Sobic005G138500 Sobic005G138500 Sobic002G379000--Sobic005G138500 Sobic003G194400 Sobic003G194400 Sobic002G379000--Sobic003G194400 Sobic004G243300 Sobic004G243300 Sobic002G379000--Sobic004G243300 Sobic009G168800 Sobic009G168800 Sobic002G379000--Sobic009G168800 Sobic001G200700 Sobic001G200700 Sobic002G379000--Sobic001G200700 Sobic004G114600 Sobic004G114600 Sobic006G050600--Sobic004G114600 Sobic006G050600--Sobic005G138500 Sobic009G171400 Sobic009G171400 Sobic006G050600--Sobic009G171400 Sobic002G413200 Sobic002G413200 Sobic006G050600--Sobic002G413200 Sobic001G396900 Sobic001G396900 Sobic006G050600--Sobic001G396900 Sobic006G034300 Sobic006G034300 Sobic006G050600--Sobic006G034300 Sobic002G143300 Sobic002G143300 Sobic006G050600--Sobic002G143300 Sobic003G011000 Sobic003G011000 Sobic006G050600--Sobic003G011000 Sobic006G269501 Sobic006G269501 Sobic006G050600--Sobic006G269501 Sobic001G385900 Sobic001G385900 Sobic003G296100--Sobic001G385900 Sobic008G170500 Sobic008G170500 Sobic003G296100--Sobic008G170500 Sobic010G134900 Sobic010G134900 Sobic003G296100--Sobic010G134900 Sobic003G300900 Sobic003G300900 Sobic003G296100--Sobic003G300900 Sobic008G189700 Sobic008G189700 Sobic003G296100--Sobic008G189700 Sobic002G374650 Sobic002G374650 Sobic003G296100--Sobic002G374650 Sobic003G128900 Sobic003G128900 Sobic003G296100--Sobic003G128900 Sobic008G169300 Sobic008G169300 Sobic003G296100--Sobic008G169300 Sobic003G128700 Sobic003G128700 Sobic003G296100--Sobic003G128700 Sobic003G292400 Sobic003G292400 Sobic010G101300--Sobic003G292400 Sobic010G101300--Sobic003G194400 Sobic006G114700 Sobic006G114700 Sobic010G101300--Sobic006G114700 Sobic010G101300--Sobic004G243300 Sobic010G101300--Sobic009G171400 Sobic010G101300--Sobic001G200700 Sobic005G183200 Sobic005G183200 Sobic010G101300--Sobic005G183200 Sobic004G047900 Sobic004G047900 Sobic010G101300--Sobic004G047900 Sobic001G307000 Sobic001G307000 Sobic010G101300--Sobic001G307000 Sobic002G151200--Sobic006G269501 Sobic001G492000 Sobic001G492000 Sobic002G151200--Sobic001G492000 Sobic009G215700 Sobic009G215700 Sobic002G151200--Sobic009G215700 Sobic001G109000 Sobic001G109000 Sobic002G151200--Sobic001G109000 Sobic002G151200--Sobic005G138500 Sobic001G354800 Sobic001G354800 Sobic002G151200--Sobic001G354800 Sobic002G151200--Sobic004G243300 Sobic002G383500 Sobic002G383500 Sobic002G151200--Sobic002G383500 Sobic007G004900 Sobic007G004900 Sobic002G151200--Sobic007G004900 Sobic005G138500--Sobic006G269501 Sobic005G138500--Sobic001G396900 Sobic005G138500--Sobic009G171400 Sobic005G138500--Sobic002G413200 Sobic005G138500--Sobic004G114600 Sobic005G138500--Sobic006G050600 Sobic005G138500--Sobic002G143300 Sobic005G138500--Sobic006G034300 Sobic005G138500--Sobic004G243300 Sobic003G194400--Sobic010G101300 Sobic003G194400--Sobic003G292400 Sobic003G194400--Sobic001G200700 Sobic003G194400--Sobic004G243300 Sobic003G011400 Sobic003G011400 Sobic003G194400--Sobic003G011400 Sobic003G194400--Sobic005G183200 Sobic003G194400--Sobic006G114700 Sobic003G194400--Sobic001G307000 Sobic003G194400--Sobic004G047900 Sobic004G243300--Sobic003G194400 Sobic004G243300--Sobic010G101300 Sobic004G243300--Sobic003G292400 Sobic004G243300--Sobic001G200700 Sobic004G243300--Sobic009G171400 Sobic004G243300--Sobic006G114700 Sobic004G243300--Sobic004G047900 Sobic004G243300--Sobic005G138500 Sobic004G243300--Sobic006G269501 Sobic009G168800--Sobic001G354800 Sobic009G168800--Sobic001G109000 Sobic009G168800--Sobic001G492000 Sobic004G142500 Sobic004G142500 Sobic009G168800--Sobic004G142500 Sobic009G168800--Sobic002G151200 Sobic009G168800--Sobic006G269501 Sobic009G168800--Sobic005G138500 Sobic009G168800--Sobic001G307000 Sobic009G168800--Sobic004G047900 Sobic001G200700--Sobic003G011400 Sobic001G200700--Sobic003G194400 Sobic001G200700--Sobic003G292400 Sobic001G200700--Sobic010G101300 Sobic002G132500 Sobic002G132500 Sobic001G200700--Sobic002G132500 Sobic009G046200 Sobic009G046200 Sobic001G200700--Sobic009G046200 Sobic006G104000 Sobic006G104000 Sobic001G200700--Sobic006G104000 Sobic001G200700--Sobic005G183200 Sobic009G116700 Sobic009G116700 Sobic001G200700--Sobic009G116700
Octagon: transcription factors


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