Gene annotation
Transcriptome id Sobic.002G409600.2,Sobic.002G409600.1
Synonym Sb02g042320
Functional annotation protein kinase APK1B, chloroplast precursor, putative, expressed
UniProt C5X4W1 , A0A1B6QG48
Pfam PF00069
Panther DB PTHR27001 PTHR27001:SF87
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G18610 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os07g47270.1 : protein kinase APK1B, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a049088 , Zm00025a026100
Brachypodium KQK14770 , KQK14771 , KQK14452 , KQK14450 , KQK14772 , KQK14773 , KQK14445 , KQK14446 , KQK14454 , KQK14453 , KQK14451 , PNT74522 , PNT74520 , PNT74521 , PNT74525 , KQK22221
Barley HORVU2Hr1G020340.15 , HORVU2Hr1G020340.14 , HORVU2Hr1G020340.16 , HORVU2Hr1G020340.11 , HORVU2Hr1G020340.10 , HORVU2Hr1G020340.13 , HORVU2Hr1G020340.12 , HORVU4Hr1G057520.10 , HORVU3Hr1G099120.12 , HORVU3Hr1G099120.13 , HORVU3Hr1G099120.10 , HORVU3Hr1G099120.11 , HORVU3Hr1G099120.14 , HORVU5Hr1G012600.1 , HORVU4Hr1G057520.4 , HORVU4Hr1G057520.7 , HORVU4Hr1G057520.6 , HORVU4Hr1G057520.1 , HORVU4Hr1G057520.3 , HORVU4Hr1G057520.2 , HORVU5Hr1G012510.2 , HORVU5Hr1G012510.3 , HORVU5Hr1G012510.1 , HORVU5Hr1G012510.6 , HORVU5Hr1G012510.7 , HORVU5Hr1G012510.4 , HORVU5Hr1G012510.5 , HORVU5Hr1G012510.8 , HORVU5Hr1G012510.9 , HORVU4Hr1G057520.9 , HORVU4Hr1G057520.8 , HORVU4Hr1G057520.5 , HORVU3Hr1G099120.8 , HORVU3Hr1G099120.9 , HORVU3Hr1G099120.1 , HORVU3Hr1G099120.2 , HORVU3Hr1G099120.3 , HORVU3Hr1G099120.4 , HORVU3Hr1G099120.5 , HORVU3Hr1G099120.6 , HORVU3Hr1G099120.7 , HORVU2Hr1G020340.9 , HORVU2Hr1G020340.8 , HORVU2Hr1G020340.1 , HORVU2Hr1G020340.3 , HORVU2Hr1G020340.2 , HORVU2Hr1G020340.5 , HORVU2Hr1G020340.4 , HORVU2Hr1G020340.7 , HORVU2Hr1G020340.6 , HORVU0Hr1G030980.1 , HORVU0Hr1G030980.2 , HORVU0Hr1G030980.3
Wheat TraesCS2B02G096000 , TraesCS2B02G137800 , TraesCS2B02G137800 , TraesCS2B02G137800 , TraesCS2B02G137800 , TraesCS2B02G137800 , TraesCS2A02G117800 , TraesCS2A02G117800 , TraesCS2A02G117800
Populus -


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cDNA sequences
Sobic.002G409600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G486300 phosphatidylinositol transfer, putative, expressed -
2 Sobic.005G023900 expressed protein -
3 Sobic.009G134500 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
4 Sobic.006G246900 expressed protein -
5 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
6 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
7 Sobic.003G268300 surp module family protein, putative, expressed -
8 Sobic.001G413500 expressed protein -
9 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
10 Sobic.001G497300 protein kinase domain containing protein, expressed -
11 Sobic.007G200600 ZOS8-11 - C2H2 zinc finger protein, expressed -
12 Sobic.010G026400 BUD13, putative, expressed K13106: BUD13, pre-mRNA-splicing factor CWC26
13 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
14 Sobic.001G094000 expressed protein -
15 Sobic.004G196700 expressed protein -
16 Sobic.007G037900 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed -
17 Sobic.009G127900 - -
18 Sobic.008G063000 transcriptional corepressor SEUSS, putative, expressed -
19 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
20 Sobic.006G082600 OsFBX133 - F-box domain containing protein, expressed K10295: F-box protein 9


Gene co-expression network
sample Sobic002G409600 Sobic002G409600 Sobic001G486300 Sobic001G486300 Sobic002G409600--Sobic001G486300 Sobic005G023900 Sobic005G023900 Sobic002G409600--Sobic005G023900 Sobic009G134500 Sobic009G134500 Sobic002G409600--Sobic009G134500 Sobic006G246900 Sobic006G246900 Sobic002G409600--Sobic006G246900 Sobic001G420200 Sobic001G420200 Sobic002G409600--Sobic001G420200 Sobic007G011400 Sobic007G011400 Sobic002G409600--Sobic007G011400 Sobic003G268300 Sobic003G268300 Sobic002G409600--Sobic003G268300 Sobic001G413500 Sobic001G413500 Sobic002G409600--Sobic001G413500 Sobic003G200200 Sobic003G200200 Sobic002G409600--Sobic003G200200 Sobic001G486300--Sobic005G023900 Sobic001G486300--Sobic001G420200 Sobic001G486300--Sobic003G268300 Sobic001G486300--Sobic007G011400 Sobic001G497300 Sobic001G497300 Sobic001G486300--Sobic001G497300 Sobic004G290800 Sobic004G290800 Sobic001G486300--Sobic004G290800 Sobic001G107500 Sobic001G107500 Sobic001G486300--Sobic001G107500 Sobic001G251700 Sobic001G251700 Sobic001G486300--Sobic001G251700 Sobic003G220200 Sobic003G220200 Sobic001G486300--Sobic003G220200 Sobic002G157000 Sobic002G157000 Sobic005G023900--Sobic002G157000 Sobic005G023900--Sobic003G200200 Sobic005G023900--Sobic001G413500 Sobic005G023900--Sobic001G497300 Sobic002G006900 Sobic002G006900 Sobic005G023900--Sobic002G006900 Sobic005G023900--Sobic001G486300 Sobic005G023900--Sobic003G268300 Sobic007G065400 Sobic007G065400 Sobic005G023900--Sobic007G065400 Sobic009G210500 Sobic009G210500 Sobic005G023900--Sobic009G210500 Sobic009G134500--Sobic006G246900 Sobic006G082600 Sobic006G082600 Sobic009G134500--Sobic006G082600 Sobic009G127900 Sobic009G127900 Sobic009G134500--Sobic009G127900 Sobic001G162300 Sobic001G162300 Sobic009G134500--Sobic001G162300 Sobic009G134500--Sobic002G157000 Sobic008G041700 Sobic008G041700 Sobic009G134500--Sobic008G041700 Sobic005G187200 Sobic005G187200 Sobic009G134500--Sobic005G187200 Sobic007G037900 Sobic007G037900 Sobic009G134500--Sobic007G037900 Sobic007G178700 Sobic007G178700 Sobic009G134500--Sobic007G178700 Sobic006G246900--Sobic001G162300 Sobic006G246900--Sobic003G268300 Sobic006G246900--Sobic007G037900 Sobic001G094000 Sobic001G094000 Sobic006G246900--Sobic001G094000 Sobic006G246900--Sobic002G157000 Sobic006G246900--Sobic009G134500 Sobic008G063000 Sobic008G063000 Sobic006G246900--Sobic008G063000 Sobic001G477800 Sobic001G477800 Sobic006G246900--Sobic001G477800 Sobic006G246900--Sobic007G011400 Sobic001G274200 Sobic001G274200 Sobic001G420200--Sobic001G274200 Sobic001G420200--Sobic002G157000 Sobic001G420200--Sobic003G268300 Sobic008G173900 Sobic008G173900 Sobic001G420200--Sobic008G173900 Sobic002G248400 Sobic002G248400 Sobic001G420200--Sobic002G248400 Sobic007G096600 Sobic007G096600 Sobic001G420200--Sobic007G096600 Sobic001G420200--Sobic007G037900 Sobic002G144933 Sobic002G144933 Sobic001G420200--Sobic002G144933 Sobic001G420200--Sobic007G178700 Sobic007G011400--Sobic001G094000 Sobic007G205800 Sobic007G205800 Sobic007G011400--Sobic007G205800 Sobic002G157300 Sobic002G157300 Sobic007G011400--Sobic002G157300 Sobic010G263800 Sobic010G263800 Sobic007G011400--Sobic010G263800 Sobic002G313300 Sobic002G313300 Sobic007G011400--Sobic002G313300 Sobic009G040700 Sobic009G040700 Sobic007G011400--Sobic009G040700 Sobic007G011400--Sobic002G157000 Sobic007G011400--Sobic001G162300 Sobic008G034600 Sobic008G034600 Sobic007G011400--Sobic008G034600 Sobic003G268300--Sobic007G096600 Sobic003G268300--Sobic002G157000 Sobic003G268300--Sobic001G420200 Sobic003G268300--Sobic003G200200 Sobic003G268300--Sobic002G248400 Sobic003G268300--Sobic009G127900 Sobic003G268300--Sobic007G178700 Sobic003G268300--Sobic007G037900 Sobic003G268300--Sobic008G173900 Sobic009G083900 Sobic009G083900 Sobic001G413500--Sobic009G083900 Sobic001G413500--Sobic008G173900 Sobic001G413500--Sobic002G157000 Sobic004G240800 Sobic004G240800 Sobic001G413500--Sobic004G240800 Sobic001G413500--Sobic001G497300 Sobic001G413500--Sobic005G023900 Sobic001G413500--Sobic003G200200 Sobic004G145500 Sobic004G145500 Sobic001G413500--Sobic004G145500 Sobic001G413500--Sobic003G268300 Sobic003G200200--Sobic002G157000 Sobic003G200200--Sobic002G006900 Sobic003G200200--Sobic003G268300 Sobic003G200200--Sobic001G251700 Sobic003G200200--Sobic007G096600 Sobic003G200200--Sobic002G248400 Sobic001G155000 Sobic001G155000 Sobic003G200200--Sobic001G155000 Sobic003G200200--Sobic008G173900 Sobic003G170100 Sobic003G170100 Sobic003G200200--Sobic003G170100
Octagon: transcription factors


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