Gene annotation
Transcriptome id Sobic.002G430100.1
Synonym Sb02g043980, FAD8
Functional annotation omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
UniProt C5X6G6
Pfam PF11960 PF00487
Panther DB PTHR32100 PTHR32100:SF15
NCBI CDD -
KEGG Orthology K10257; FAD3, FAD7, FAD8, acyl-lipid omega-3 desaturase
Gene Ontology GO:0016717; oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water GO:0006629lipid metabolic process


Orthologs (automatic annotation)
TAIR AT5G05580 : fatty acid desaturase 8
RAP-DB (Rice) LOC_Os07g49310.1 : omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a052679 , Zm00025a015517 , Zm00025a054239 , Zm00025a028922 , Zm00025a054240 , Zm00025a001974
Brachypodium KQK14478 , KQJ92651 , KQK22170
Barley HORVU5Hr1G048240.6 , HORVU4Hr1G056470.12 , HORVU4Hr1G056470.10 , HORVU4Hr1G056470.11 , HORVU4Hr1G056470.15 , HORVU4Hr1G024960.4 , HORVU4Hr1G024960.3 , HORVU4Hr1G024960.2 , HORVU4Hr1G024960.1 , HORVU3Hr1G026670.8 , HORVU3Hr1G026670.9 , HORVU3Hr1G026670.6 , HORVU3Hr1G026670.7 , HORVU3Hr1G026670.4 , HORVU3Hr1G026670.5 , HORVU3Hr1G026670.2 , HORVU3Hr1G026670.3 , HORVU3Hr1G026670.1 , HORVU5Hr1G048240.3 , HORVU5Hr1G048240.4 , HORVU5Hr1G048240.7 , HORVU5Hr1G048240.9 , HORVU5Hr1G048240.8 , HORVU3Hr1G026670.14 , HORVU3Hr1G026670.15 , HORVU3Hr1G026670.16 , HORVU3Hr1G026670.17 , HORVU3Hr1G026670.10 , HORVU3Hr1G026670.11 , HORVU3Hr1G026670.12 , HORVU3Hr1G026670.13 , HORVU3Hr1G026670.18 , HORVU3Hr1G026670.19 , HORVU4Hr1G056470.3 , HORVU4Hr1G056470.13 , HORVU3Hr1G026670.21 , HORVU3Hr1G026670.20 , HORVU3Hr1G026670.23 , HORVU3Hr1G026670.22 , HORVU4Hr1G056470.9 , HORVU5Hr1G048240.1 , HORVU4Hr1G056470.1 , HORVU5Hr1G048240.2 , HORVU4Hr1G056470.4 , HORVU4Hr1G056470.6 , HORVU4Hr1G056470.8 , HORVU5Hr1G048240.5
Wheat TraesCS4A02G109300 , TraesCS2D02G082700 , TraesCS5B02G153000 , TraesCS5A02G154800 , TraesCS4D02G130700 , TraesCS4A02G182700 , TraesCS2B02G099500 , TraesCS4B02G135900 , TraesCS4B02G194900 , TraesCS5D02G159700 , TraesCS2A02G084800
Populus -


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cDNA sequences
Sobic.002G430100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G225200 CAMK_CAMK_like.9 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
2 Sobic.003G365200 expressed protein -
3 Sobic.010G000200 expressed protein -
4 Sobic.007G111500 expressed protein -
5 Sobic.001G212900 FHA domain containing protein, putative, expressed K10867: NBN, nibrin
6 Sobic.001G424650 - -
7 Sobic.004G173200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
8 Sobic.001G442000 Ser/Thr protein phosphatase family protein, putative, expressed K14379: tartrate-resistant acid phosphatase type 5
9 Sobic.001G492400 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
10 Sobic.002G187900 expressed protein -
11 Sobic.007G077466 - -
12 Sobic.002G398600 cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1
13 Sobic.008G103400 universal stress protein domain containing protein, putative, expressed -
14 Sobic.006G255200 - -
15 Sobic.006G249600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
16 Sobic.001G370800 - -
17 Sobic.001G191300 bile acid sodium symporter family protein, putative, expressed K03453: bile acid:Na+ symporter, BASS family
18 Sobic.001G503700 DUF677 domain containing protein, putative, expressed -
19 Sobic.002G110600 regulatory protein, putative, expressed -
20 Sobic.008G192900 -(PubMedID : 29751546)@sodium/hydrogen exchanger 7, putative, expressed -


Gene co-expression network
sample Sobic002G430100 Sobic002G430100 Sobic003G225200 Sobic003G225200 Sobic002G430100--Sobic003G225200 Sobic003G365200 Sobic003G365200 Sobic002G430100--Sobic003G365200 Sobic010G000200 Sobic010G000200 Sobic002G430100--Sobic010G000200 Sobic007G111500 Sobic007G111500 Sobic002G430100--Sobic007G111500 Sobic001G212900 Sobic001G212900 Sobic002G430100--Sobic001G212900 Sobic001G424650 Sobic001G424650 Sobic002G430100--Sobic001G424650 Sobic004G173200 Sobic004G173200 Sobic002G430100--Sobic004G173200 Sobic001G442000 Sobic001G442000 Sobic002G430100--Sobic001G442000 Sobic001G492400 Sobic001G492400 Sobic002G430100--Sobic001G492400 Sobic003G225200--Sobic010G000200 Sobic003G225200--Sobic001G212900 Sobic001G503700 Sobic001G503700 Sobic003G225200--Sobic001G503700 Sobic003G225200--Sobic001G492400 Sobic003G225200--Sobic004G173200 Sobic002G110600 Sobic002G110600 Sobic003G225200--Sobic002G110600 Sobic008G103400 Sobic008G103400 Sobic003G225200--Sobic008G103400 Sobic002G187900 Sobic002G187900 Sobic003G225200--Sobic002G187900 Sobic007G077466 Sobic007G077466 Sobic003G225200--Sobic007G077466 Sobic003G253700 Sobic003G253700 Sobic003G365200--Sobic003G253700 Sobic003G155000 Sobic003G155000 Sobic003G365200--Sobic003G155000 Sobic001G520000 Sobic001G520000 Sobic003G365200--Sobic001G520000 Sobic006G134300 Sobic006G134300 Sobic003G365200--Sobic006G134300 Sobic010G012200 Sobic010G012200 Sobic003G365200--Sobic010G012200 Sobic003G262600 Sobic003G262600 Sobic003G365200--Sobic003G262600 Sobic003G155800 Sobic003G155800 Sobic003G365200--Sobic003G155800 Sobic004G227700 Sobic004G227700 Sobic003G365200--Sobic004G227700 Sobic006G249600 Sobic006G249600 Sobic003G365200--Sobic006G249600 Sobic010G000200--Sobic004G173200 Sobic010G000200--Sobic010G012200 Sobic003G362800 Sobic003G362800 Sobic010G000200--Sobic003G362800 Sobic010G000200--Sobic001G212900 Sobic010G000200--Sobic003G155000 Sobic010G000200--Sobic003G262600 Sobic001G370800 Sobic001G370800 Sobic010G000200--Sobic001G370800 Sobic010G000200--Sobic002G187900 Sobic010G000200--Sobic003G225200 Sobic007G111500--Sobic002G430100 Sobic002G036300 Sobic002G036300 Sobic007G111500--Sobic002G036300 Sobic003G347520 Sobic003G347520 Sobic007G111500--Sobic003G347520 Sobic007G111500--Sobic003G365200 Sobic006G074500 Sobic006G074500 Sobic007G111500--Sobic006G074500 Sobic006G109000 Sobic006G109000 Sobic007G111500--Sobic006G109000 Sobic006G101600 Sobic006G101600 Sobic007G111500--Sobic006G101600 Sobic003G050800 Sobic003G050800 Sobic007G111500--Sobic003G050800 Sobic001G460900 Sobic001G460900 Sobic007G111500--Sobic001G460900 Sobic001G109400 Sobic001G109400 Sobic001G212900--Sobic001G109400 Sobic001G212900--Sobic006G249600 Sobic001G212900--Sobic002G187900 Sobic002G374000 Sobic002G374000 Sobic001G212900--Sobic002G374000 Sobic001G212900--Sobic010G000200 Sobic001G212900--Sobic002G110600 Sobic004G127600 Sobic004G127600 Sobic001G212900--Sobic004G127600 Sobic001G212900--Sobic004G173200 Sobic001G212900--Sobic010G012200 Sobic009G088300 Sobic009G088300 Sobic001G424650--Sobic009G088300 Sobic001G424650--Sobic001G492400 Sobic005G110553 Sobic005G110553 Sobic001G424650--Sobic005G110553 Sobic001G424650--Sobic001G370800 Sobic001G424650--Sobic001G442000 Sobic009G122000 Sobic009G122000 Sobic001G424650--Sobic009G122000 Sobic001G334400 Sobic001G334400 Sobic001G424650--Sobic001G334400 Sobic004G224000 Sobic004G224000 Sobic001G424650--Sobic004G224000 Sobic006G255200 Sobic006G255200 Sobic001G424650--Sobic006G255200 Sobic004G173200--Sobic010G000200 Sobic004G173200--Sobic003G262600 Sobic002G398600 Sobic002G398600 Sobic004G173200--Sobic002G398600 Sobic004G173200--Sobic001G370800 Sobic004G173200--Sobic002G187900 Sobic004G173200--Sobic003G362800 Sobic004G173200--Sobic006G249600 Sobic004G173200--Sobic001G212900 Sobic002G001500 Sobic002G001500 Sobic004G173200--Sobic002G001500 Sobic001G442000--Sobic006G255200 Sobic004G072201 Sobic004G072201 Sobic001G442000--Sobic004G072201 Sobic001G442000--Sobic001G370800 Sobic001G442000--Sobic004G127600 Sobic001G442000--Sobic009G088300 Sobic002G309300 Sobic002G309300 Sobic001G442000--Sobic002G309300 Sobic009G026600 Sobic009G026600 Sobic001G442000--Sobic009G026600 Sobic001G038700 Sobic001G038700 Sobic001G442000--Sobic001G038700 Sobic001G442000--Sobic002G187900 Sobic001G492400--Sobic001G424650 Sobic001G492400--Sobic002G187900 Sobic001G492400--Sobic009G088300 Sobic001G492400--Sobic004G173200 Sobic001G492400--Sobic001G370800 Sobic001G492400--Sobic006G255200 Sobic001G492400--Sobic003G225200 Sobic002G262850 Sobic002G262850 Sobic001G492400--Sobic002G262850 Sobic008G177100 Sobic008G177100 Sobic001G492400--Sobic008G177100
Octagon: transcription factors


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