Gene annotation
Transcriptome id Sobic.003G052000.1
Synonym Sb03g004510
Functional annotation carboxyl-terminal proteinase, putative, expressed
UniProt C5XNG0
Pfam PF14365 PF03080
Panther DB PTHR31589 PTHR31589:SF23
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G50150 : Protein of Unknown Function (DUF239)
RAP-DB (Rice) LOC_Os01g07570.1 : carboxyl-terminal proteinase, putative, expressed
MaizeGDB (Corn) Zm00025a043074 , Zm00025a023262 , Zm00025a050744 , Zm00025a028811 , Zm00025a035717
Brachypodium KQK07295 , KQK08247 , KQK07294 , KQK02907
Barley -
Wheat TraesCS3B02G228700 , TraesCS3A02G092700 , TraesCS3D02G202200 , TraesCS3A02G201800 , TraesCS1D02G115500 , TraesCS1A02G113900 , TraesCS1A02G113900 , TraesCS3B02G107900 , TraesCS1B02G134200 , TraesCS7D02G234500 , TraesCS7D02G234500 , TraesCS3D02G092800 , TraesCS3D02G092800 , TraesCS7B02G132600 , TraesCS7A02G234300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G488900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
2 Sobic.002G313000 targeting protein-related, putative, expressed K16812: targeting protein for Xklp2
3 Sobic.010G010900 expressed protein -
4 Sobic.010G129700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
5 Sobic.001G299600 GATA zinc finger domain containing protein, expressed -
6 Sobic.001G075400 expressed protein -
7 Sobic.001G140600 expressed protein -
8 Sobic.010G181500 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
9 Sobic.002G071850 - -
10 Sobic.001G177900 Kinesin motor domain domain containing protein, expressed K10400: kinesin family member 15
11 Sobic.007G180200 NC domain-containing protein, putative, expressed -
12 Sobic.006G214000 expressed protein K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
13 Sobic.005G016300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.004G246500 ATMAP70 protein, putative, expressed -
15 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
16 Sobic.001G155700 expansin precursor, putative, expressed -
17 Sobic.006G219500 remorin family protein, putative, expressed -
18 Sobic.009G175100 inactive receptor kinase At2g26730 precursor, putative, expressed -
19 Sobic.006G272500 "PKc_like super family, protein kjinases, catalytic domain"(PubMedID : 29491869)@expressed protein -
20 Sobic.007G116800 BURP domain containing protein, expressed -


Gene co-expression network
sample Sobic003G052000 Sobic003G052000 Sobic001G488900 Sobic001G488900 Sobic003G052000--Sobic001G488900 Sobic002G313000 Sobic002G313000 Sobic003G052000--Sobic002G313000 Sobic010G010900 Sobic010G010900 Sobic003G052000--Sobic010G010900 Sobic010G129700 Sobic010G129700 Sobic003G052000--Sobic010G129700 Sobic001G299600 Sobic001G299600 Sobic003G052000--Sobic001G299600 Sobic001G075400 Sobic001G075400 Sobic003G052000--Sobic001G075400 Sobic001G140600 Sobic001G140600 Sobic003G052000--Sobic001G140600 Sobic010G181500 Sobic010G181500 Sobic003G052000--Sobic010G181500 Sobic002G071850 Sobic002G071850 Sobic003G052000--Sobic002G071850 Sobic001G488900--Sobic001G299600 Sobic001G488900--Sobic010G010900 Sobic007G180200 Sobic007G180200 Sobic001G488900--Sobic007G180200 Sobic001G199400 Sobic001G199400 Sobic001G488900--Sobic001G199400 Sobic005G199700 Sobic005G199700 Sobic001G488900--Sobic005G199700 Sobic003G356600 Sobic003G356600 Sobic001G488900--Sobic003G356600 Sobic001G488900--Sobic003G052000 Sobic009G146700 Sobic009G146700 Sobic001G488900--Sobic009G146700 Sobic006G219500 Sobic006G219500 Sobic001G488900--Sobic006G219500 Sobic002G313000--Sobic010G129700 Sobic003G260700 Sobic003G260700 Sobic002G313000--Sobic003G260700 Sobic008G114900 Sobic008G114900 Sobic002G313000--Sobic008G114900 Sobic008G006800 Sobic008G006800 Sobic002G313000--Sobic008G006800 Sobic008G125700 Sobic008G125700 Sobic002G313000--Sobic008G125700 Sobic002G313000--Sobic001G140600 Sobic002G319300 Sobic002G319300 Sobic002G313000--Sobic002G319300 Sobic001G170800 Sobic001G170800 Sobic002G313000--Sobic001G170800 Sobic001G398400 Sobic001G398400 Sobic002G313000--Sobic001G398400 Sobic010G010900--Sobic001G488900 Sobic006G272500 Sobic006G272500 Sobic010G010900--Sobic006G272500 Sobic003G309400 Sobic003G309400 Sobic010G010900--Sobic003G309400 Sobic002G419200 Sobic002G419200 Sobic010G010900--Sobic002G419200 Sobic003G300400 Sobic003G300400 Sobic010G010900--Sobic003G300400 Sobic009G172700 Sobic009G172700 Sobic010G010900--Sobic009G172700 Sobic001G267800 Sobic001G267800 Sobic010G010900--Sobic001G267800 Sobic002G032500 Sobic002G032500 Sobic010G010900--Sobic002G032500 Sobic010G010900--Sobic002G071850 Sobic010G129700--Sobic002G313000 Sobic009G184200 Sobic009G184200 Sobic010G129700--Sobic009G184200 Sobic010G129700--Sobic001G398400 Sobic010G129700--Sobic003G260700 Sobic001G493900 Sobic001G493900 Sobic010G129700--Sobic001G493900 Sobic010G129700--Sobic008G114900 Sobic004G267600 Sobic004G267600 Sobic010G129700--Sobic004G267600 Sobic007G116800 Sobic007G116800 Sobic010G129700--Sobic007G116800 Sobic010G129700--Sobic008G006800 Sobic001G299600--Sobic007G180200 Sobic010G014500 Sobic010G014500 Sobic001G299600--Sobic010G014500 Sobic001G299600--Sobic001G488900 Sobic003G338700 Sobic003G338700 Sobic001G299600--Sobic003G338700 Sobic001G299600--Sobic005G199700 Sobic001G299600--Sobic001G199400 Sobic001G155700 Sobic001G155700 Sobic001G299600--Sobic001G155700 Sobic007G165800 Sobic007G165800 Sobic001G299600--Sobic007G165800 Sobic001G299600--Sobic001G493900 Sobic003G328500 Sobic003G328500 Sobic001G075400--Sobic003G328500 Sobic004G077100 Sobic004G077100 Sobic001G075400--Sobic004G077100 Sobic001G177900 Sobic001G177900 Sobic001G075400--Sobic001G177900 Sobic006G134200 Sobic006G134200 Sobic001G075400--Sobic006G134200 Sobic009G233500 Sobic009G233500 Sobic001G075400--Sobic009G233500 Sobic007G207700 Sobic007G207700 Sobic001G075400--Sobic007G207700 Sobic001G075400--Sobic002G313000 Sobic005G016300 Sobic005G016300 Sobic001G075400--Sobic005G016300 Sobic001G131300 Sobic001G131300 Sobic001G075400--Sobic001G131300 Sobic001G140600--Sobic002G313000 Sobic001G140600--Sobic008G006800 Sobic001G140600--Sobic001G177900 Sobic001G540900 Sobic001G540900 Sobic001G140600--Sobic001G540900 Sobic001G140600--Sobic003G260700 Sobic004G271300 Sobic004G271300 Sobic001G140600--Sobic004G271300 Sobic010G215300 Sobic010G215300 Sobic001G140600--Sobic010G215300 Sobic003G102000 Sobic003G102000 Sobic001G140600--Sobic003G102000 Sobic004G339500 Sobic004G339500 Sobic001G140600--Sobic004G339500 Sobic003G419700 Sobic003G419700 Sobic010G181500--Sobic003G419700 Sobic010G181500--Sobic010G010900 Sobic001G074000 Sobic001G074000 Sobic010G181500--Sobic001G074000 Sobic001G522300 Sobic001G522300 Sobic010G181500--Sobic001G522300 Sobic001G083500 Sobic001G083500 Sobic010G181500--Sobic001G083500 Sobic010G111200 Sobic010G111200 Sobic010G181500--Sobic010G111200 Sobic003G338200 Sobic003G338200 Sobic010G181500--Sobic003G338200 Sobic005G104100 Sobic005G104100 Sobic010G181500--Sobic005G104100 Sobic003G360700 Sobic003G360700 Sobic010G181500--Sobic003G360700 Sobic008G097700 Sobic008G097700 Sobic002G071850--Sobic008G097700 Sobic003G070600 Sobic003G070600 Sobic002G071850--Sobic003G070600 Sobic007G160300 Sobic007G160300 Sobic002G071850--Sobic007G160300 Sobic010G020600 Sobic010G020600 Sobic002G071850--Sobic010G020600 Sobic004G248100 Sobic004G248100 Sobic002G071850--Sobic004G248100 Sobic007G163400 Sobic007G163400 Sobic002G071850--Sobic007G163400 Sobic002G293700 Sobic002G293700 Sobic002G071850--Sobic002G293700 Sobic003G089300 Sobic003G089300 Sobic002G071850--Sobic003G089300 Sobic003G339600 Sobic003G339600 Sobic002G071850--Sobic003G339600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.