Gene annotation
Transcriptome id Sobic.003G073100.1
Synonym Sb03g006190
Functional annotation expressed protein
UniProt C5XQ05
Pfam PF12442
Panther DB PTHR33530 PTHR33530:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g05410.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G230600 expressed protein -
2 Sobic.010G031100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
3 Sobic.004G088300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBK4 - F-box domain and kelch repeat containing protein, expressed -
4 Sobic.009G148100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.002G389000 cytochrome P450 72A1, putative, expressed -
6 Sobic.004G210700 ATOZI1, putative, expressed -
7 Sobic.006G230800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
8 Sobic.001G525200 expressed protein -
9 Sobic.003G145400 expressed protein -
10 Sobic.004G340200 dehydrogenase, putative, expressed K09753: cinnamoyl-CoA reductase
11 Sobic.006G190100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed -
12 Sobic.010G198600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.009G123400 - -
14 Sobic.001G076100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.010G032100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
16 Sobic.004G166200 expressed protein -
17 Sobic.001G371800 expressed protein -
18 Sobic.002G261200 expressed protein -
19 Sobic.002G215300 expressed protein -
20 Sobic.008G162700 fatty acid hydroxylase, putative, expressed K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase


Gene co-expression network
sample Sobic003G073100 Sobic003G073100 Sobic006G230600 Sobic006G230600 Sobic003G073100--Sobic006G230600 Sobic010G031100 Sobic010G031100 Sobic003G073100--Sobic010G031100 Sobic004G088300 Sobic004G088300 Sobic003G073100--Sobic004G088300 Sobic009G148100 Sobic009G148100 Sobic003G073100--Sobic009G148100 Sobic002G389000 Sobic002G389000 Sobic003G073100--Sobic002G389000 Sobic004G210700 Sobic004G210700 Sobic003G073100--Sobic004G210700 Sobic006G230800 Sobic006G230800 Sobic003G073100--Sobic006G230800 Sobic001G525200 Sobic001G525200 Sobic003G073100--Sobic001G525200 Sobic003G145400 Sobic003G145400 Sobic003G073100--Sobic003G145400 Sobic006G230600--Sobic002G389000 Sobic001G371800 Sobic001G371800 Sobic006G230600--Sobic001G371800 Sobic001G107800 Sobic001G107800 Sobic006G230600--Sobic001G107800 Sobic001G076100 Sobic001G076100 Sobic006G230600--Sobic001G076100 Sobic007G214400 Sobic007G214400 Sobic006G230600--Sobic007G214400 Sobic003G394400 Sobic003G394400 Sobic006G230600--Sobic003G394400 Sobic006G230600--Sobic004G088300 Sobic006G230600--Sobic006G230800 Sobic006G230600--Sobic010G031100 Sobic010G032100 Sobic010G032100 Sobic010G031100--Sobic010G032100 Sobic010G031100--Sobic006G230800 Sobic001G149800 Sobic001G149800 Sobic010G031100--Sobic001G149800 Sobic002G215300 Sobic002G215300 Sobic010G031100--Sobic002G215300 Sobic006G032700 Sobic006G032700 Sobic010G031100--Sobic006G032700 Sobic010G031100--Sobic006G230600 Sobic002G261200 Sobic002G261200 Sobic010G031100--Sobic002G261200 Sobic003G138300 Sobic003G138300 Sobic010G031100--Sobic003G138300 Sobic001G254100 Sobic001G254100 Sobic010G031100--Sobic001G254100 Sobic004G088300--Sobic002G389000 Sobic004G088300--Sobic001G076100 Sobic004G088300--Sobic006G230600 Sobic004G088300--Sobic007G214400 Sobic004G088300--Sobic001G371800 Sobic004G088300--Sobic001G107800 Sobic004G088300--Sobic006G230800 Sobic004G088300--Sobic010G031100 Sobic001G443800 Sobic001G443800 Sobic004G088300--Sobic001G443800 Sobic006G190100 Sobic006G190100 Sobic009G148100--Sobic006G190100 Sobic010G198600 Sobic010G198600 Sobic009G148100--Sobic010G198600 Sobic001G105900 Sobic001G105900 Sobic009G148100--Sobic001G105900 Sobic006G190500 Sobic006G190500 Sobic009G148100--Sobic006G190500 Sobic009G148100--Sobic001G076100 Sobic009G148100--Sobic001G443800 Sobic009G148100--Sobic002G389000 Sobic009G148100--Sobic004G088300 Sobic002G291900 Sobic002G291900 Sobic009G148100--Sobic002G291900 Sobic002G389000--Sobic007G214400 Sobic002G389000--Sobic001G371800 Sobic002G389000--Sobic001G107800 Sobic002G389000--Sobic003G394400 Sobic002G389000--Sobic001G076100 Sobic002G389000--Sobic006G230600 Sobic002G389000--Sobic004G088300 Sobic002G389000--Sobic002G261200 Sobic002G389000--Sobic001G254100 Sobic004G340200 Sobic004G340200 Sobic004G210700--Sobic004G340200 Sobic007G066900 Sobic007G066900 Sobic004G210700--Sobic007G066900 Sobic009G123400 Sobic009G123400 Sobic004G210700--Sobic009G123400 Sobic007G067608 Sobic007G067608 Sobic004G210700--Sobic007G067608 Sobic004G210700--Sobic010G031100 Sobic010G032000 Sobic010G032000 Sobic004G210700--Sobic010G032000 Sobic005G215601 Sobic005G215601 Sobic004G210700--Sobic005G215601 Sobic004G140850 Sobic004G140850 Sobic004G210700--Sobic004G140850 Sobic006G230800--Sobic006G190500 Sobic003G123600 Sobic003G123600 Sobic006G230800--Sobic003G123600 Sobic006G230800--Sobic010G031100 Sobic006G230800--Sobic001G107800 Sobic006G230800--Sobic002G261200 Sobic002G415600 Sobic002G415600 Sobic006G230800--Sobic002G415600 Sobic006G230800--Sobic006G230600 Sobic009G111200 Sobic009G111200 Sobic006G230800--Sobic009G111200 Sobic006G230800--Sobic010G032100 Sobic001G525200--Sobic003G145400 Sobic002G104200 Sobic002G104200 Sobic001G525200--Sobic002G104200 Sobic004G236100 Sobic004G236100 Sobic001G525200--Sobic004G236100 Sobic009G069800 Sobic009G069800 Sobic001G525200--Sobic009G069800 Sobic008G162700 Sobic008G162700 Sobic001G525200--Sobic008G162700 Sobic002G042000 Sobic002G042000 Sobic001G525200--Sobic002G042000 Sobic001G525200--Sobic010G031100 Sobic004G336500 Sobic004G336500 Sobic001G525200--Sobic004G336500 Sobic004G067600 Sobic004G067600 Sobic001G525200--Sobic004G067600 Sobic003G145400--Sobic001G525200 Sobic006G230700 Sobic006G230700 Sobic003G145400--Sobic006G230700 Sobic003G145400--Sobic009G069800 Sobic003G145400--Sobic010G031100 Sobic003G145400--Sobic008G162700 Sobic003G145400--Sobic006G190500 Sobic003G145400--Sobic006G230800 Sobic003G145400--Sobic004G236100 Sobic003G145400--Sobic004G336500
Octagon: transcription factors


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