Gene annotation
Transcriptome id Sobic.003G100600.1
Synonym -, PPC4, Sb03g008410, ATPPC4,phosphoenolpyruvate carboxylase 6 (SbPPC6 )
Functional annotation PEPC (PubMedID : 19549309)
"BTPC, as Class-2 PEPC" (PubMedID : 2308851)
phosphoenolpyruvate carboxylase, putative, expressed
UniProt C5XEX3
Pfam PF00311
Panther DB PTHR30523 PTHR30523:SF6
NCBI CDD -
KEGG Orthology K01595; phosphoenolpyruvate carboxylase
Gene Ontology GO:0015977; carbon fixation GO:0008964phosphoenolpyruvate carboxylase activity GO:0006099tricarboxylic acid cycle


Orthologs (automatic annotation)
TAIR AT1G68750 : phosphoenolpyruvate carboxylase 4
RAP-DB (Rice) LOC_Os01g02050.1 : phosphoenolpyruvate carboxylase, putative, expressed
MaizeGDB (Corn) Zm00025a023775
Brachypodium KQK18156 , KQK18155 , KQK02343
Barley HORVU3Hr1G000940.1 , HORVU3Hr1G000940.2 , HORVU3Hr1G000940.3 , HORVU3Hr1G000940.4 , HORVU3Hr1G000940.5 , HORVU3Hr1G000940.6 , HORVU3Hr1G000940.7
Wheat TraesCS3B02G008500 , TraesCS3B02G011200 , TraesCS3D02G005000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G060000 WD40-like domain containing protein, putative, expressed -
2 Sobic.004G002300 START domain containing protein, expressed -
3 Sobic.006G059100 POEI20 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
4 Sobic.002G049700 potassium channel AKT1, putative, expressed -
5 Sobic.001G188100 expressed protein K15191: La-related protein 7
6 Sobic.007G001800 harpin-induced protein 1 domain containing protein, expressed -
7 Sobic.005G191300 MBTB64 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
8 Sobic.009G110700 OsFBL58 - F-box domain and LRR containing protein, expressed -
9 Sobic.001G409000 - -
10 Sobic.007G145500 adenylyl cyclase-associated protein, putative, expressed K17261: CAP1_2, adenylyl cyclase-associated protein
11 Sobic.006G164800 eukaryotic translation initiation factor 4G, putative, expressed K03260: translation initiation factor 4G
12 Sobic.001G287400 VQ domain containing protein, putative, expressed -
13 Sobic.008G043300 - -
14 Sobic.001G092500 protein kinase domain containing protein, expressed -
15 Sobic.008G134600 - -
16 Sobic.001G212500 vacuolar protein sorting-associated protein 52, putative, expressed -
17 Sobic.001G329200 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
18 Sobic.001G171300 UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
19 Sobic.001G261416 - K01858: INO1, myo-inositol-1-phosphate synthase
20 Sobic.005G040700 amino acid permease family protein, putative, expressed -


Gene co-expression network
sample Sobic003G100600 Sobic003G100600 Sobic009G060000 Sobic009G060000 Sobic003G100600--Sobic009G060000 Sobic004G002300 Sobic004G002300 Sobic003G100600--Sobic004G002300 Sobic006G059100 Sobic006G059100 Sobic003G100600--Sobic006G059100 Sobic002G049700 Sobic002G049700 Sobic003G100600--Sobic002G049700 Sobic001G188100 Sobic001G188100 Sobic003G100600--Sobic001G188100 Sobic007G001800 Sobic007G001800 Sobic003G100600--Sobic007G001800 Sobic005G191300 Sobic005G191300 Sobic003G100600--Sobic005G191300 Sobic009G110700 Sobic009G110700 Sobic003G100600--Sobic009G110700 Sobic001G409000 Sobic001G409000 Sobic003G100600--Sobic001G409000 Sobic009G158300 Sobic009G158300 Sobic009G060000--Sobic009G158300 Sobic009G060000--Sobic002G049700 Sobic009G060000--Sobic001G409000 Sobic009G060000--Sobic007G001800 Sobic003G445600 Sobic003G445600 Sobic009G060000--Sobic003G445600 Sobic003G160600 Sobic003G160600 Sobic009G060000--Sobic003G160600 Sobic006G164800 Sobic006G164800 Sobic009G060000--Sobic006G164800 Sobic007G145500 Sobic007G145500 Sobic009G060000--Sobic007G145500 Sobic009G016900 Sobic009G016900 Sobic009G060000--Sobic009G016900 Sobic006G028600 Sobic006G028600 Sobic004G002300--Sobic006G028600 Sobic009G091600 Sobic009G091600 Sobic004G002300--Sobic009G091600 Sobic006G236300 Sobic006G236300 Sobic004G002300--Sobic006G236300 Sobic007G112400 Sobic007G112400 Sobic004G002300--Sobic007G112400 Sobic009G091300 Sobic009G091300 Sobic004G002300--Sobic009G091300 Sobic005G110120 Sobic005G110120 Sobic004G002300--Sobic005G110120 Sobic008G027900 Sobic008G027900 Sobic004G002300--Sobic008G027900 Sobic005G142400 Sobic005G142400 Sobic004G002300--Sobic005G142400 Sobic006G195000 Sobic006G195000 Sobic004G002300--Sobic006G195000 Sobic004G294200 Sobic004G294200 Sobic006G059100--Sobic004G294200 Sobic008G124301 Sobic008G124301 Sobic006G059100--Sobic008G124301 Sobic002G066100 Sobic002G066100 Sobic006G059100--Sobic002G066100 Sobic009G177300 Sobic009G177300 Sobic006G059100--Sobic009G177300 Sobic008G134600 Sobic008G134600 Sobic006G059100--Sobic008G134600 Sobic006G071096 Sobic006G071096 Sobic006G059100--Sobic006G071096 Sobic002G197900 Sobic002G197900 Sobic006G059100--Sobic002G197900 Sobic003G343000 Sobic003G343000 Sobic006G059100--Sobic003G343000 Sobic001G473700 Sobic001G473700 Sobic006G059100--Sobic001G473700 Sobic001G392650 Sobic001G392650 Sobic002G049700--Sobic001G392650 Sobic002G049700--Sobic008G134600 Sobic002G049700--Sobic009G060000 Sobic002G049700--Sobic009G158300 Sobic001G092500 Sobic001G092500 Sobic002G049700--Sobic001G092500 Sobic002G049700--Sobic001G188100 Sobic004G134000 Sobic004G134000 Sobic002G049700--Sobic004G134000 Sobic008G043300 Sobic008G043300 Sobic002G049700--Sobic008G043300 Sobic010G276100 Sobic010G276100 Sobic002G049700--Sobic010G276100 Sobic004G036400 Sobic004G036400 Sobic001G188100--Sobic004G036400 Sobic001G188100--Sobic002G049700 Sobic001G188100--Sobic001G409000 Sobic001G188100--Sobic006G164800 Sobic001G188100--Sobic007G001800 Sobic001G188100--Sobic009G060000 Sobic001G188100--Sobic003G445600 Sobic004G062300 Sobic004G062300 Sobic001G188100--Sobic004G062300 Sobic001G188100--Sobic008G134600 Sobic007G001800--Sobic001G409000 Sobic004G217200 Sobic004G217200 Sobic007G001800--Sobic004G217200 Sobic007G001800--Sobic006G164800 Sobic007G001800--Sobic009G016900 Sobic001G269600 Sobic001G269600 Sobic007G001800--Sobic001G269600 Sobic001G269700 Sobic001G269700 Sobic007G001800--Sobic001G269700 Sobic003G394801 Sobic003G394801 Sobic007G001800--Sobic003G394801 Sobic002G414300 Sobic002G414300 Sobic007G001800--Sobic002G414300 Sobic007G167000 Sobic007G167000 Sobic007G001800--Sobic007G167000 Sobic005G191300--Sobic001G092500 Sobic007G042800 Sobic007G042800 Sobic005G191300--Sobic007G042800 Sobic005G191300--Sobic008G043300 Sobic005G204600 Sobic005G204600 Sobic005G191300--Sobic005G204600 Sobic010G040400 Sobic010G040400 Sobic005G191300--Sobic010G040400 Sobic010G016200 Sobic010G016200 Sobic005G191300--Sobic010G016200 Sobic005G191300--Sobic010G276100 Sobic005G191300--Sobic009G110700 Sobic008G043200 Sobic008G043200 Sobic005G191300--Sobic008G043200 Sobic003G245300 Sobic003G245300 Sobic009G110700--Sobic003G245300 Sobic007G122600 Sobic007G122600 Sobic009G110700--Sobic007G122600 Sobic008G024200 Sobic008G024200 Sobic009G110700--Sobic008G024200 Sobic009G047100 Sobic009G047100 Sobic009G110700--Sobic009G047100 Sobic005G006100 Sobic005G006100 Sobic009G110700--Sobic005G006100 Sobic001G167300 Sobic001G167300 Sobic009G110700--Sobic001G167300 Sobic010G216100 Sobic010G216100 Sobic009G110700--Sobic010G216100 Sobic010G207800 Sobic010G207800 Sobic009G110700--Sobic010G207800 Sobic001G192300 Sobic001G192300 Sobic009G110700--Sobic001G192300 Sobic001G409000--Sobic007G001800 Sobic001G409000--Sobic009G016900 Sobic001G409000--Sobic004G217200 Sobic001G409000--Sobic006G164800 Sobic001G409000--Sobic004G062300 Sobic008G153700 Sobic008G153700 Sobic001G409000--Sobic008G153700 Sobic001G409000--Sobic003G394801 Sobic002G414150 Sobic002G414150 Sobic001G409000--Sobic002G414150 Sobic001G409000--Sobic001G269600
Octagon: transcription factors


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