Gene annotation
Transcriptome id Sobic.003G136900.1,Sobic.003G136900.2
Synonym PIF3, POC1, PAP3
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt A0A1B6Q304
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF178
NCBI CDD KOG4304; Transcriptional repressors of the hairy/E(spl) family (contains HLH)
KEGG Orthology K12126; phytochrome-interacting factor 3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09530 : phytochrome interacting factor 3
RAP-DB (Rice) LOC_Os05g04740.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035167 , Zm00025a024216
Brachypodium KQK03996 , PNT70375
Barley HORVU1Hr1G017900.10 , HORVU1Hr1G017900.12 , HORVU1Hr1G017900.13 , HORVU1Hr1G017900.2 , HORVU1Hr1G017900.3 , HORVU1Hr1G017900.1 , HORVU1Hr1G017900.6 , HORVU1Hr1G017900.4 , HORVU1Hr1G017900.5
Wheat TraesCS1A02G083000 , TraesCS1B02G100400
Populus -


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cDNA sequences
Sobic.003G136900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G272532 - -
2 Sobic.003G429650 - -
3 Sobic.002G173000 disease resistance protein RGA2, putative, expressed -
4 Sobic.010G255700 plant-specific domain TIGR01589 family protein, putative, expressed -
5 Sobic.002G006600 -(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed K14272: glutamate--glyoxylate aminotransferase
6 Sobic.010G225226 - -
7 Sobic.001G132300 NB-ARC domain containing protein, expressed -
8 Sobic.006G048500 - -
9 Sobic.002G144966 - K02997: RP-S9e, small subunit ribosomal protein S9e
10 Sobic.008G027000 rp1, putative, expressed -
11 Sobic.001G191600 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
12 Sobic.006G105400 expressed protein -
13 Sobic.005G144400 - -
14 Sobic.006G182900 expressed protein -
15 Sobic.001G318432 - -
16 Sobic.001G060100 CK1_CaseinKinase_1a.4 - CK1 includes the casein kinase 1 kinases, expressed -
17 Sobic.005G039500 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
18 Sobic.009G161600 - -
19 Sobic.004G007100 - -
20 Sobic.001G067850 - -


Gene co-expression network
sample Sobic003G136900 Sobic003G136900 Sobic001G272532 Sobic001G272532 Sobic003G136900--Sobic001G272532 Sobic003G429650 Sobic003G429650 Sobic003G136900--Sobic003G429650 Sobic002G173000 Sobic002G173000 Sobic003G136900--Sobic002G173000 Sobic010G255700 Sobic010G255700 Sobic003G136900--Sobic010G255700 Sobic002G006600 Sobic002G006600 Sobic003G136900--Sobic002G006600 Sobic010G225226 Sobic010G225226 Sobic003G136900--Sobic010G225226 Sobic001G132300 Sobic001G132300 Sobic003G136900--Sobic001G132300 Sobic006G048500 Sobic006G048500 Sobic003G136900--Sobic006G048500 Sobic002G144966 Sobic002G144966 Sobic003G136900--Sobic002G144966 Sobic001G272532--Sobic010G225226 Sobic008G027000 Sobic008G027000 Sobic001G272532--Sobic008G027000 Sobic001G288301 Sobic001G288301 Sobic001G272532--Sobic001G288301 Sobic003G020000 Sobic003G020000 Sobic001G272532--Sobic003G020000 Sobic005G141801 Sobic005G141801 Sobic001G272532--Sobic005G141801 Sobic009G104201 Sobic009G104201 Sobic001G272532--Sobic009G104201 Sobic006G088580 Sobic006G088580 Sobic001G272532--Sobic006G088580 Sobic010G057700 Sobic010G057700 Sobic001G272532--Sobic010G057700 Sobic007G178700 Sobic007G178700 Sobic001G272532--Sobic007G178700 Sobic003G429650--Sobic006G048500 Sobic006G182900 Sobic006G182900 Sobic003G429650--Sobic006G182900 Sobic003G148000 Sobic003G148000 Sobic003G429650--Sobic003G148000 Sobic005G144400 Sobic005G144400 Sobic003G429650--Sobic005G144400 Sobic003G179201 Sobic003G179201 Sobic003G429650--Sobic003G179201 Sobic001G287201 Sobic001G287201 Sobic003G429650--Sobic001G287201 Sobic002G243900 Sobic002G243900 Sobic003G429650--Sobic002G243900 Sobic001G214300 Sobic001G214300 Sobic003G429650--Sobic001G214300 Sobic002G006900 Sobic002G006900 Sobic003G429650--Sobic002G006900 Sobic002G173000--Sobic006G182900 Sobic002G173000--Sobic001G214300 Sobic005G032800 Sobic005G032800 Sobic002G173000--Sobic005G032800 Sobic006G021250 Sobic006G021250 Sobic002G173000--Sobic006G021250 Sobic010G248700 Sobic010G248700 Sobic002G173000--Sobic010G248700 Sobic002G173000--Sobic008G027000 Sobic002G173000--Sobic001G287201 Sobic001G318432 Sobic001G318432 Sobic002G173000--Sobic001G318432 Sobic001G474600 Sobic001G474600 Sobic002G173000--Sobic001G474600 Sobic006G105400 Sobic006G105400 Sobic010G255700--Sobic006G105400 Sobic010G255700--Sobic001G318432 Sobic006G048600 Sobic006G048600 Sobic010G255700--Sobic006G048600 Sobic009G228100 Sobic009G228100 Sobic010G255700--Sobic009G228100 Sobic006G274600 Sobic006G274600 Sobic010G255700--Sobic006G274600 Sobic004G258700 Sobic004G258700 Sobic010G255700--Sobic004G258700 Sobic010G255700--Sobic006G048500 Sobic010G255700--Sobic005G144400 Sobic010G255700--Sobic003G148000 Sobic003G017100 Sobic003G017100 Sobic002G006600--Sobic003G017100 Sobic001G198100 Sobic001G198100 Sobic002G006600--Sobic001G198100 Sobic010G002700 Sobic010G002700 Sobic002G006600--Sobic010G002700 Sobic001G169900 Sobic001G169900 Sobic002G006600--Sobic001G169900 Sobic002G006600--Sobic003G429650 Sobic004G164400 Sobic004G164400 Sobic002G006600--Sobic004G164400 Sobic002G006600--Sobic006G182900 Sobic009G209300 Sobic009G209300 Sobic002G006600--Sobic009G209300 Sobic002G006600--Sobic006G105400 Sobic010G225226--Sobic001G272532 Sobic010G225226--Sobic009G104201 Sobic010G225226--Sobic003G020000 Sobic010G225226--Sobic001G288301 Sobic010G225226--Sobic007G178700 Sobic003G087400 Sobic003G087400 Sobic010G225226--Sobic003G087400 Sobic004G007100 Sobic004G007100 Sobic010G225226--Sobic004G007100 Sobic003G176400 Sobic003G176400 Sobic010G225226--Sobic003G176400 Sobic010G225226--Sobic002G144966 Sobic001G132300--Sobic002G173000 Sobic005G039500 Sobic005G039500 Sobic001G132300--Sobic005G039500 Sobic003G325200 Sobic003G325200 Sobic001G132300--Sobic003G325200 Sobic003G254000 Sobic003G254000 Sobic001G132300--Sobic003G254000 Sobic009G127900 Sobic009G127900 Sobic001G132300--Sobic009G127900 Sobic008G026900 Sobic008G026900 Sobic001G132300--Sobic008G026900 Sobic001G035900 Sobic001G035900 Sobic001G132300--Sobic001G035900 Sobic009G140500 Sobic009G140500 Sobic001G132300--Sobic009G140500 Sobic001G132300--Sobic001G318432 Sobic006G048500--Sobic004G007100 Sobic006G048500--Sobic005G144400 Sobic002G145101 Sobic002G145101 Sobic006G048500--Sobic002G145101 Sobic006G048500--Sobic003G148000 Sobic006G048500--Sobic003G429650 Sobic006G048500--Sobic002G243900 Sobic006G048500--Sobic006G048600 Sobic006G048500--Sobic002G006900 Sobic006G048500--Sobic006G182900 Sobic001G464200 Sobic001G464200 Sobic002G144966--Sobic001G464200 Sobic006G262200 Sobic006G262200 Sobic002G144966--Sobic006G262200 Sobic005G077466 Sobic005G077466 Sobic002G144966--Sobic005G077466 Sobic001G111900 Sobic001G111900 Sobic002G144966--Sobic001G111900 Sobic002G144966--Sobic003G087400 Sobic009G065100 Sobic009G065100 Sobic002G144966--Sobic009G065100 Sobic006G076300 Sobic006G076300 Sobic002G144966--Sobic006G076300 Sobic004G039700 Sobic004G039700 Sobic002G144966--Sobic004G039700 Sobic001G511500 Sobic001G511500 Sobic002G144966--Sobic001G511500
Octagon: transcription factors


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