Gene annotation
Transcriptome id Sobic.003G146300.1
Synonym Sb03g012630
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt C5XIR2
Pfam -
Panther DB PTHR33702 PTHR33702:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G47485 : -
RAP-DB (Rice) LOC_Os01g20730.1 : expressed protein
MaizeGDB (Corn) Zm00025a024321 , Zm00025a036064
Brachypodium -
Barley HORVU1Hr1G059290.1
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G146300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G209000 expressed protein -
2 Sobic.002G302600 OsFBX291 - F-box domain containing protein, expressed -
3 Sobic.009G194700 IQ calmodulin-binding motif family protein, putative, expressed -
4 Sobic.004G052800 DUF640 domain containing protein, putative, expressed -
5 Sobic.006G183600 IQ calmodulin-binding motif family protein, putative, expressed -
6 Sobic.006G126600 Trihelix Family(PubMedID : 24864043)@MYB family transcription factor, putative, expressed -
7 Sobic.001G384600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
8 Sobic.007G133400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.006G187800 expressed protein -
10 Sobic.005G177900 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
11 Sobic.006G022500 OsFBD9 - F-box and FBD domain containing protein, expressed -
12 Sobic.004G041100 ATEXO70G1, putative, expressed K07195: EXOC7, exocyst complex component 7
13 Sobic.001G065300 GRF zinc finger family protein, expressed -
14 Sobic.004G207000 fasciated ear2, putative, expressed -
15 Sobic.001G228400 OsFBX217 - F-box domain containing protein, expressed -
16 Sobic.010G189100 expressed protein -
17 Sobic.003G240100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.009G192500 OsFBX169 - F-box domain containing protein, expressed -
19 Sobic.002G007200 plastocyanin-like domain containing protein, putative, expressed -
20 Sobic.001G468000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF677 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G146300 Sobic003G146300 Sobic007G209000 Sobic007G209000 Sobic003G146300--Sobic007G209000 Sobic002G302600 Sobic002G302600 Sobic003G146300--Sobic002G302600 Sobic009G194700 Sobic009G194700 Sobic003G146300--Sobic009G194700 Sobic004G052800 Sobic004G052800 Sobic003G146300--Sobic004G052800 Sobic006G183600 Sobic006G183600 Sobic003G146300--Sobic006G183600 Sobic006G126600 Sobic006G126600 Sobic003G146300--Sobic006G126600 Sobic001G384600 Sobic001G384600 Sobic003G146300--Sobic001G384600 Sobic007G133400 Sobic007G133400 Sobic003G146300--Sobic007G133400 Sobic006G187800 Sobic006G187800 Sobic003G146300--Sobic006G187800 Sobic001G130700 Sobic001G130700 Sobic007G209000--Sobic001G130700 Sobic010G189100 Sobic010G189100 Sobic007G209000--Sobic010G189100 Sobic003G022200 Sobic003G022200 Sobic007G209000--Sobic003G022200 Sobic007G078300 Sobic007G078300 Sobic007G209000--Sobic007G078300 Sobic007G209000--Sobic006G126600 Sobic010G270800 Sobic010G270800 Sobic007G209000--Sobic010G270800 Sobic008G169800 Sobic008G169800 Sobic007G209000--Sobic008G169800 Sobic007G209000--Sobic009G194700 Sobic007G209000--Sobic003G146300 Sobic001G540700 Sobic001G540700 Sobic002G302600--Sobic001G540700 Sobic004G207000 Sobic004G207000 Sobic002G302600--Sobic004G207000 Sobic006G272800 Sobic006G272800 Sobic002G302600--Sobic006G272800 Sobic001G468000 Sobic001G468000 Sobic002G302600--Sobic001G468000 Sobic002G284100 Sobic002G284100 Sobic002G302600--Sobic002G284100 Sobic002G302600--Sobic006G126600 Sobic009G006900 Sobic009G006900 Sobic002G302600--Sobic009G006900 Sobic009G031500 Sobic009G031500 Sobic002G302600--Sobic009G031500 Sobic007G197100 Sobic007G197100 Sobic002G302600--Sobic007G197100 Sobic009G194700--Sobic001G384600 Sobic005G177900 Sobic005G177900 Sobic009G194700--Sobic005G177900 Sobic009G194700--Sobic006G126600 Sobic006G022500 Sobic006G022500 Sobic009G194700--Sobic006G022500 Sobic009G192500 Sobic009G192500 Sobic009G194700--Sobic009G192500 Sobic001G352600 Sobic001G352600 Sobic009G194700--Sobic001G352600 Sobic009G194700--Sobic004G207000 Sobic009G194700--Sobic007G197100 Sobic007G125700 Sobic007G125700 Sobic009G194700--Sobic007G125700 Sobic001G079900 Sobic001G079900 Sobic004G052800--Sobic001G079900 Sobic001G384700 Sobic001G384700 Sobic004G052800--Sobic001G384700 Sobic002G216600 Sobic002G216600 Sobic004G052800--Sobic002G216600 Sobic004G052800--Sobic005G177900 Sobic004G052800--Sobic007G197100 Sobic005G204100 Sobic005G204100 Sobic004G052800--Sobic005G204100 Sobic005G032600 Sobic005G032600 Sobic004G052800--Sobic005G032600 Sobic004G012700 Sobic004G012700 Sobic004G052800--Sobic004G012700 Sobic003G302000 Sobic003G302000 Sobic004G052800--Sobic003G302000 Sobic006G160200 Sobic006G160200 Sobic006G183600--Sobic006G160200 Sobic006G183600--Sobic002G302600 Sobic003G240100 Sobic003G240100 Sobic006G183600--Sobic003G240100 Sobic001G300400 Sobic001G300400 Sobic006G183600--Sobic001G300400 Sobic002G353200 Sobic002G353200 Sobic006G183600--Sobic002G353200 Sobic006G183600--Sobic002G284100 Sobic001G487200 Sobic001G487200 Sobic006G183600--Sobic001G487200 Sobic006G183600--Sobic001G540700 Sobic006G267800 Sobic006G267800 Sobic006G183600--Sobic006G267800 Sobic009G257500 Sobic009G257500 Sobic006G126600--Sobic009G257500 Sobic006G126600--Sobic004G207000 Sobic008G056200 Sobic008G056200 Sobic006G126600--Sobic008G056200 Sobic006G126600--Sobic009G031500 Sobic006G126600--Sobic009G192500 Sobic003G415100 Sobic003G415100 Sobic006G126600--Sobic003G415100 Sobic006G126600--Sobic007G125700 Sobic006G126600--Sobic005G177900 Sobic006G126600--Sobic002G302600 Sobic001G384600--Sobic005G177900 Sobic001G384600--Sobic006G022500 Sobic004G148600 Sobic004G148600 Sobic001G384600--Sobic004G148600 Sobic001G228400 Sobic001G228400 Sobic001G384600--Sobic001G228400 Sobic001G384600--Sobic009G194700 Sobic003G244700 Sobic003G244700 Sobic001G384600--Sobic003G244700 Sobic001G384600--Sobic006G126600 Sobic006G022400 Sobic006G022400 Sobic001G384600--Sobic006G022400 Sobic001G384600--Sobic004G052800 Sobic007G133400--Sobic003G146300 Sobic003G098600 Sobic003G098600 Sobic007G133400--Sobic003G098600 Sobic009G034400 Sobic009G034400 Sobic007G133400--Sobic009G034400 Sobic006G184100 Sobic006G184100 Sobic007G133400--Sobic006G184100 Sobic001G479800 Sobic001G479800 Sobic007G133400--Sobic001G479800 Sobic004G122000 Sobic004G122000 Sobic007G133400--Sobic004G122000 Sobic007G037000 Sobic007G037000 Sobic007G133400--Sobic007G037000 Sobic001G335201 Sobic001G335201 Sobic007G133400--Sobic001G335201 Sobic001G127400 Sobic001G127400 Sobic007G133400--Sobic001G127400 Sobic007G214700 Sobic007G214700 Sobic006G187800--Sobic007G214700 Sobic002G051200 Sobic002G051200 Sobic006G187800--Sobic002G051200 Sobic006G013900 Sobic006G013900 Sobic006G187800--Sobic006G013900 Sobic006G187800--Sobic006G183600 Sobic001G116600 Sobic001G116600 Sobic006G187800--Sobic001G116600 Sobic006G133700 Sobic006G133700 Sobic006G187800--Sobic006G133700 Sobic001G113800 Sobic001G113800 Sobic006G187800--Sobic001G113800 Sobic003G382100 Sobic003G382100 Sobic006G187800--Sobic003G382100 Sobic002G179150 Sobic002G179150 Sobic006G187800--Sobic002G179150
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.