Gene annotation
Transcriptome id Sobic.003G237300.1
Synonym Sb03g029480
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
OsFBX20 - F-box domain containing protein, expressed
UniProt C5XF61
Pfam PF00646
Panther DB PTHR32133 PTHR32133:SF86
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G19970 : -
RAP-DB (Rice) LOC_Os01g45900.1 : OsFBX20 - F-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a028253
Brachypodium KQK08964
Barley HORVU6Hr1G054590.1 , HORVU6Hr1G054590.2 , HORVU5Hr1G096680.1 , HORVU5Hr1G011840.1 , HORVU3Hr1G058150.2 , HORVU3Hr1G058150.3 , HORVU3Hr1G058150.1 , HORVU3Hr1G058150.4
Wheat TraesCS3D02G220000 , TraesCS3B02G262500 , TraesCS3A02G233100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G232900 uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase
2 Sobic.004G339800 phosphate transporter 1, putative, expressed -
3 Sobic.002G214200 ferric reductase, putative, expressed K13447: respiratory burst oxidase
4 Sobic.007G186700 resistance protein, putative, expressed -
5 Sobic.005G176600 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
6 Sobic.003G045650 - -
7 Sobic.002G081800 RGH1A, putative, expressed -
8 Sobic.005G095500 protein kinase domain containing protein, expressed K04733: interleukin-1 receptor-associated kinase 4
9 Sobic.010G018600 retinol dehydrogenase, putative, expressed -
10 Sobic.006G229901 - -
11 Sobic.004G299500 - -
12 Sobic.008G058600 protein kinase family protein, putative, expressed -
13 Sobic.006G121000 purine permease, putative, expressed -
14 Sobic.001G234100 expressed protein -
15 Sobic.007G009500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@TKL_IRAK_CR4L.6 - The CR4L subfamily has homology with Crinkly4, expressed -
16 Sobic.005G212800 carboxyl-terminal peptidase, putative, expressed -
17 Sobic.001G395900 Nicotianamine synthase 4("PubMedID : 26759170,PubMedID : 24597475")@nicotianamine synthase, putative, expressed K05953: nicotianamine synthase
18 Sobic.005G022200 XRN 5-3 exonuclease N-terminus family protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
19 Sobic.004G080300 -(PubMedID : 23108465)@MONOCULM 1, putative, expressed -
20 Sobic.005G101000 - -


Gene co-expression network
sample Sobic003G237300 Sobic003G237300 Sobic004G232900 Sobic004G232900 Sobic003G237300--Sobic004G232900 Sobic004G339800 Sobic004G339800 Sobic003G237300--Sobic004G339800 Sobic002G214200 Sobic002G214200 Sobic003G237300--Sobic002G214200 Sobic007G186700 Sobic007G186700 Sobic003G237300--Sobic007G186700 Sobic005G176600 Sobic005G176600 Sobic003G237300--Sobic005G176600 Sobic003G045650 Sobic003G045650 Sobic003G237300--Sobic003G045650 Sobic002G081800 Sobic002G081800 Sobic003G237300--Sobic002G081800 Sobic005G095500 Sobic005G095500 Sobic003G237300--Sobic005G095500 Sobic010G018600 Sobic010G018600 Sobic003G237300--Sobic010G018600 Sobic007G009500 Sobic007G009500 Sobic004G232900--Sobic007G009500 Sobic004G271500 Sobic004G271500 Sobic004G232900--Sobic004G271500 Sobic002G207000 Sobic002G207000 Sobic004G232900--Sobic002G207000 Sobic010G176800 Sobic010G176800 Sobic004G232900--Sobic010G176800 Sobic004G008600 Sobic004G008600 Sobic004G232900--Sobic004G008600 Sobic010G269000 Sobic010G269000 Sobic004G232900--Sobic010G269000 Sobic005G134200 Sobic005G134200 Sobic004G232900--Sobic005G134200 Sobic001G183600 Sobic001G183600 Sobic004G232900--Sobic001G183600 Sobic004G232900--Sobic002G214200 Sobic003G079100 Sobic003G079100 Sobic004G339800--Sobic003G079100 Sobic002G029500 Sobic002G029500 Sobic004G339800--Sobic002G029500 Sobic002G197000 Sobic002G197000 Sobic004G339800--Sobic002G197000 Sobic003G083800 Sobic003G083800 Sobic004G339800--Sobic003G083800 Sobic005G110511 Sobic005G110511 Sobic004G339800--Sobic005G110511 Sobic006G108300 Sobic006G108300 Sobic004G339800--Sobic006G108300 Sobic007G064900 Sobic007G064900 Sobic004G339800--Sobic007G064900 Sobic009G084400 Sobic009G084400 Sobic004G339800--Sobic009G084400 Sobic004G312500 Sobic004G312500 Sobic004G339800--Sobic004G312500 Sobic001G144200 Sobic001G144200 Sobic002G214200--Sobic001G144200 Sobic010G118300 Sobic010G118300 Sobic002G214200--Sobic010G118300 Sobic008G014700 Sobic008G014700 Sobic002G214200--Sobic008G014700 Sobic009G206500 Sobic009G206500 Sobic002G214200--Sobic009G206500 Sobic002G214200--Sobic004G339800 Sobic002G275500 Sobic002G275500 Sobic002G214200--Sobic002G275500 Sobic006G172200 Sobic006G172200 Sobic002G214200--Sobic006G172200 Sobic002G214200--Sobic007G009500 Sobic009G026101 Sobic009G026101 Sobic002G214200--Sobic009G026101 Sobic006G121000 Sobic006G121000 Sobic007G186700--Sobic006G121000 Sobic002G178200 Sobic002G178200 Sobic007G186700--Sobic002G178200 Sobic004G002901 Sobic004G002901 Sobic007G186700--Sobic004G002901 Sobic005G216400 Sobic005G216400 Sobic007G186700--Sobic005G216400 Sobic005G060200 Sobic005G060200 Sobic007G186700--Sobic005G060200 Sobic007G111800 Sobic007G111800 Sobic007G186700--Sobic007G111800 Sobic006G229901 Sobic006G229901 Sobic007G186700--Sobic006G229901 Sobic007G015000 Sobic007G015000 Sobic007G186700--Sobic007G015000 Sobic007G212000 Sobic007G212000 Sobic007G186700--Sobic007G212000 Sobic008G058600 Sobic008G058600 Sobic005G176600--Sobic008G058600 Sobic005G101000 Sobic005G101000 Sobic005G176600--Sobic005G101000 Sobic005G176600--Sobic003G045650 Sobic001G234100 Sobic001G234100 Sobic005G176600--Sobic001G234100 Sobic008G084800 Sobic008G084800 Sobic005G176600--Sobic008G084800 Sobic001G395900 Sobic001G395900 Sobic005G176600--Sobic001G395900 Sobic005G212800 Sobic005G212800 Sobic005G176600--Sobic005G212800 Sobic005G205400 Sobic005G205400 Sobic005G176600--Sobic005G205400 Sobic005G176600--Sobic006G229901 Sobic003G045650--Sobic006G229901 Sobic003G045650--Sobic008G058600 Sobic003G045650--Sobic005G101000 Sobic007G202480 Sobic007G202480 Sobic003G045650--Sobic007G202480 Sobic004G299500 Sobic004G299500 Sobic003G045650--Sobic004G299500 Sobic003G045650--Sobic001G395900 Sobic003G045650--Sobic005G176600 Sobic003G045650--Sobic005G212800 Sobic003G045650--Sobic001G234100 Sobic002G081850 Sobic002G081850 Sobic002G081800--Sobic002G081850 Sobic005G022200 Sobic005G022200 Sobic002G081800--Sobic005G022200 Sobic002G081800--Sobic005G110511 Sobic005G066366 Sobic005G066366 Sobic002G081800--Sobic005G066366 Sobic010G242800 Sobic010G242800 Sobic002G081800--Sobic010G242800 Sobic005G197350 Sobic005G197350 Sobic002G081800--Sobic005G197350 Sobic003G161400 Sobic003G161400 Sobic002G081800--Sobic003G161400 Sobic005G066500 Sobic005G066500 Sobic002G081800--Sobic005G066500 Sobic002G081800--Sobic004G339800 Sobic005G095500--Sobic003G045650 Sobic005G095500--Sobic008G058600 Sobic005G095500--Sobic003G083800 Sobic005G095500--Sobic004G299500 Sobic005G095500--Sobic007G111800 Sobic005G095500--Sobic007G015000 Sobic005G095500--Sobic006G121000 Sobic005G097900 Sobic005G097900 Sobic005G095500--Sobic005G097900 Sobic005G095500--Sobic006G229901 Sobic005G069166 Sobic005G069166 Sobic010G018600--Sobic005G069166 Sobic010G018600--Sobic004G299500 Sobic006G230100 Sobic006G230100 Sobic010G018600--Sobic006G230100 Sobic010G018600--Sobic007G202480 Sobic004G261500 Sobic004G261500 Sobic010G018600--Sobic004G261500 Sobic010G018600--Sobic001G395900 Sobic010G018600--Sobic006G229901 Sobic010G018600--Sobic008G058600 Sobic010G018600--Sobic007G015000
Octagon: transcription factors


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