Gene annotation
Transcriptome id Sobic.003G258300.10,Sobic.003G258300.1,Sobic.003G258300.9,Sobic.003G258300.4,Sobic.003G258300.7,Sobic.003G258300.2,Sobic.003G258300.6,Sobic.003G258300.3,Sobic.003G258300.5,Sobic.003G258300.8
Synonym Sb03g031280, ATG6, ATATG6, BECLIN1, AtBECLIN1
Functional annotation beclin-1, putative, expressed
UniProt A0A1B6Q5C8 , A0A1B6Q5B9 , A0A1B6Q5C9 , A0A1B6Q5G2 , A0A1B6Q5D3 , A0A1B6Q5D1 , A0A1W0VYX2
Pfam PF04111
Panther DB PTHR12768 PTHR12768:SF4
NCBI CDD KOG2751; Beclin-like protein
KEGG Orthology K08334; BECN, VPS30, beclin
Gene Ontology GO:0006914; autophagy


Orthologs (automatic annotation)
TAIR AT3G61710 : AUTOPHAGY 6
RAP-DB (Rice) LOC_Os03g44200.2,LOC_Os01g48920.1,LOC_Os03g15290.1 : beclin-1, putative, expressed
MaizeGDB (Corn) Zm00025a026224
Brachypodium -
Barley HORVU3Hr1G062970.1 , HORVU3Hr1G062970.3 , HORVU3Hr1G062970.2 , HORVU3Hr1G062970.4 , HORVU3Hr1G062970.6
Wheat TraesCS3D02G266800 , TraesCS3A02G266600 , TraesCS3B02G300100 , TraesCS3B02G300100
Populus -


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cDNA sequences
Sobic.003G258300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G111850 - -
2 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
3 Sobic.006G040500 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase
4 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
5 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
6 Sobic.004G182100 expressed protein -
7 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
8 Sobic.004G038800 OsFBX188 - F-box domain containing protein, expressed -
9 Sobic.004G010151 - -
10 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
11 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
12 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
13 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
14 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
15 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
16 Sobic.002G397500 SAC3/GANP family protein, expressed -
17 Sobic.007G042400 HEAT repeat family protein, putative, expressed -
18 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
19 Sobic.003G166750 - K15188: cyclin T
20 Sobic.009G084900 expressed protein -


Gene co-expression network
sample Sobic003G258300 Sobic003G258300 Sobic001G111850 Sobic001G111850 Sobic003G258300--Sobic001G111850 Sobic009G256400 Sobic009G256400 Sobic003G258300--Sobic009G256400 Sobic006G040500 Sobic006G040500 Sobic003G258300--Sobic006G040500 Sobic008G063300 Sobic008G063300 Sobic003G258300--Sobic008G063300 Sobic007G105100 Sobic007G105100 Sobic003G258300--Sobic007G105100 Sobic004G182100 Sobic004G182100 Sobic003G258300--Sobic004G182100 Sobic001G194200 Sobic001G194200 Sobic003G258300--Sobic001G194200 Sobic004G038800 Sobic004G038800 Sobic003G258300--Sobic004G038800 Sobic004G010151 Sobic004G010151 Sobic003G258300--Sobic004G010151 Sobic003G166750 Sobic003G166750 Sobic001G111850--Sobic003G166750 Sobic009G165700 Sobic009G165700 Sobic001G111850--Sobic009G165700 Sobic001G439300 Sobic001G439300 Sobic001G111850--Sobic001G439300 Sobic008G001200 Sobic008G001200 Sobic001G111850--Sobic008G001200 Sobic001G111850--Sobic009G256400 Sobic001G433800 Sobic001G433800 Sobic001G111850--Sobic001G433800 Sobic001G370900 Sobic001G370900 Sobic001G111850--Sobic001G370900 Sobic010G123600 Sobic010G123600 Sobic001G111850--Sobic010G123600 Sobic002G042600 Sobic002G042600 Sobic001G111850--Sobic002G042600 Sobic001G457800 Sobic001G457800 Sobic009G256400--Sobic001G457800 Sobic009G256400--Sobic008G001200 Sobic009G256400--Sobic001G370900 Sobic004G291900 Sobic004G291900 Sobic009G256400--Sobic004G291900 Sobic005G001000 Sobic005G001000 Sobic009G256400--Sobic005G001000 Sobic009G256400--Sobic003G166750 Sobic009G256400--Sobic001G194200 Sobic004G276400 Sobic004G276400 Sobic009G256400--Sobic004G276400 Sobic010G010700 Sobic010G010700 Sobic009G256400--Sobic010G010700 Sobic003G186000 Sobic003G186000 Sobic006G040500--Sobic003G186000 Sobic006G040500--Sobic005G001000 Sobic007G062800 Sobic007G062800 Sobic006G040500--Sobic007G062800 Sobic005G112300 Sobic005G112300 Sobic006G040500--Sobic005G112300 Sobic006G040500--Sobic010G010700 Sobic002G008900 Sobic002G008900 Sobic006G040500--Sobic002G008900 Sobic006G040500--Sobic009G256400 Sobic006G040500--Sobic010G123600 Sobic006G040500--Sobic004G276400 Sobic004G140600 Sobic004G140600 Sobic008G063300--Sobic004G140600 Sobic008G063300--Sobic001G433800 Sobic006G096900 Sobic006G096900 Sobic008G063300--Sobic006G096900 Sobic003G360400 Sobic003G360400 Sobic008G063300--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic008G063300--Sobic003G095900 Sobic008G063300--Sobic010G123600 Sobic003G188400 Sobic003G188400 Sobic008G063300--Sobic003G188400 Sobic009G177500 Sobic009G177500 Sobic008G063300--Sobic009G177500 Sobic010G059500 Sobic010G059500 Sobic008G063300--Sobic010G059500 Sobic007G105100--Sobic005G112300 Sobic001G289600 Sobic001G289600 Sobic007G105100--Sobic001G289600 Sobic003G408600 Sobic003G408600 Sobic007G105100--Sobic003G408600 Sobic007G105100--Sobic010G010700 Sobic007G105100--Sobic007G062800 Sobic005G008800 Sobic005G008800 Sobic007G105100--Sobic005G008800 Sobic001G540400 Sobic001G540400 Sobic007G105100--Sobic001G540400 Sobic007G105100--Sobic003G360400 Sobic010G112100 Sobic010G112100 Sobic007G105100--Sobic010G112100 Sobic008G087866 Sobic008G087866 Sobic004G182100--Sobic008G087866 Sobic004G204200 Sobic004G204200 Sobic004G182100--Sobic004G204200 Sobic002G366400 Sobic002G366400 Sobic004G182100--Sobic002G366400 Sobic001G441400 Sobic001G441400 Sobic004G182100--Sobic001G441400 Sobic003G443100 Sobic003G443100 Sobic004G182100--Sobic003G443100 Sobic009G010600 Sobic009G010600 Sobic004G182100--Sobic009G010600 Sobic004G072100 Sobic004G072100 Sobic004G182100--Sobic004G072100 Sobic001G536400 Sobic001G536400 Sobic004G182100--Sobic001G536400 Sobic004G182100--Sobic003G408600 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic001G194200--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic001G194200--Sobic001G289800 Sobic001G194200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic001G194200--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic001G194200--Sobic004G034900 Sobic006G072601 Sobic006G072601 Sobic004G038800--Sobic006G072601 Sobic002G115050 Sobic002G115050 Sobic004G038800--Sobic002G115050 Sobic001G303100 Sobic001G303100 Sobic004G038800--Sobic001G303100 Sobic010G131700 Sobic010G131700 Sobic004G038800--Sobic010G131700 Sobic002G115075 Sobic002G115075 Sobic004G038800--Sobic002G115075 Sobic001G381600 Sobic001G381600 Sobic004G038800--Sobic001G381600 Sobic010G033100 Sobic010G033100 Sobic004G038800--Sobic010G033100 Sobic007G198400 Sobic007G198400 Sobic004G038800--Sobic007G198400 Sobic007G106800 Sobic007G106800 Sobic004G038800--Sobic007G106800 Sobic005G110300 Sobic005G110300 Sobic004G010151--Sobic005G110300 Sobic007G116200 Sobic007G116200 Sobic004G010151--Sobic007G116200 Sobic005G110200 Sobic005G110200 Sobic004G010151--Sobic005G110200 Sobic004G174200 Sobic004G174200 Sobic004G010151--Sobic004G174200 Sobic004G010151--Sobic002G008900 Sobic004G127400 Sobic004G127400 Sobic004G010151--Sobic004G127400 Sobic001G071400 Sobic001G071400 Sobic004G010151--Sobic001G071400 Sobic009G191000 Sobic009G191000 Sobic004G010151--Sobic009G191000 Sobic004G010151--Sobic001G111850
Octagon: transcription factors


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