Gene annotation
Transcriptome id Sobic.003G276400.2,Sobic.003G276400.1,Sobic.003G276400.3
Synonym ATAMY3, Sb03g032830, AMY3,
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Alpha-amylase isozime 2 precursor AMY3 (Os) (PubMedID : 27208977)
alpha-amylase precursor, putative, expressed
UniProt A0A1B6Q5R0
Pfam PF00128 PF07821
Panther DB PTHR10357 PTHR10357:SF171
NCBI CDD KOG0471; Alpha-amylase
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0003824catalytic activity GO:0005509calcium ion binding GO:0004556alpha-amylase activity


Orthologs (automatic annotation)
TAIR AT1G69830 : alpha-amylase-like 3
RAP-DB (Rice) LOC_Os01g51754.1 : alpha-amylase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a027789
Brachypodium KQK09465 , KQK09466
Barley HORVU3Hr1G067620.2 , HORVU3Hr1G067620.3 , HORVU3Hr1G067620.1 , HORVU3Hr1G067620.6 , HORVU3Hr1G067620.7 , HORVU3Hr1G067620.4 , HORVU3Hr1G067620.5
Wheat TraesCS3D02G248000 , TraesCS3A02G248000 , TraesCS3B02G276700 , TraesCS3B02G276700
Populus -


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cDNA sequences
Sobic.003G276400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G144300 - -
2 Sobic.001G104100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ACT domain containing protein, expressed -
3 Sobic.003G001650 - -
4 Sobic.005G025400 CAMK_CAMK_like.42 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
5 Sobic.001G113400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@seed maturation protein PM41, putative, expressed -
6 Sobic.006G024400 receptor-like protein kinase, putative, expressed -
7 Sobic.003G362800 - -
8 Sobic.009G049100 - -
9 Sobic.005G014400 esterase, putative, expressed -
10 Sobic.004G310400 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
11 Sobic.002G085600 - -
12 Sobic.008G016800 zinc finger DHHC domain-containing protein, putative, expressed -
13 Sobic.009G147600 pentatricopeptide, putative, expressed -
14 Sobic.001G191300 bile acid sodium symporter family protein, putative, expressed K03453: bile acid:Na+ symporter, BASS family
15 Sobic.001G093732 - -
16 Sobic.004G181000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.004G026000 ankyrin repeat domain-containing protein, chloroplast precursor, putative, expressed -
18 Sobic.001G350800 - -
19 Sobic.007G194000 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
20 Sobic.002G001500 pentatricopeptide containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G276400 Sobic003G276400 Sobic004G144300 Sobic004G144300 Sobic003G276400--Sobic004G144300 Sobic001G104100 Sobic001G104100 Sobic003G276400--Sobic001G104100 Sobic003G001650 Sobic003G001650 Sobic003G276400--Sobic003G001650 Sobic005G025400 Sobic005G025400 Sobic003G276400--Sobic005G025400 Sobic001G113400 Sobic001G113400 Sobic003G276400--Sobic001G113400 Sobic006G024400 Sobic006G024400 Sobic003G276400--Sobic006G024400 Sobic003G362800 Sobic003G362800 Sobic003G276400--Sobic003G362800 Sobic009G049100 Sobic009G049100 Sobic003G276400--Sobic009G049100 Sobic005G014400 Sobic005G014400 Sobic003G276400--Sobic005G014400 Sobic004G310400 Sobic004G310400 Sobic004G144300--Sobic004G310400 Sobic004G144300--Sobic003G362800 Sobic004G144300--Sobic001G113400 Sobic005G048800 Sobic005G048800 Sobic004G144300--Sobic005G048800 Sobic001G520000 Sobic001G520000 Sobic004G144300--Sobic001G520000 Sobic002G085600 Sobic002G085600 Sobic004G144300--Sobic002G085600 Sobic003G118500 Sobic003G118500 Sobic004G144300--Sobic003G118500 Sobic004G144300--Sobic009G049100 Sobic001G096200 Sobic001G096200 Sobic004G144300--Sobic001G096200 Sobic009G199900 Sobic009G199900 Sobic001G104100--Sobic009G199900 Sobic004G026000 Sobic004G026000 Sobic001G104100--Sobic004G026000 Sobic003G106100 Sobic003G106100 Sobic001G104100--Sobic003G106100 Sobic004G314100 Sobic004G314100 Sobic001G104100--Sobic004G314100 Sobic001G028500 Sobic001G028500 Sobic001G104100--Sobic001G028500 Sobic001G104100--Sobic003G118500 Sobic002G320700 Sobic002G320700 Sobic001G104100--Sobic002G320700 Sobic002G399000 Sobic002G399000 Sobic001G104100--Sobic002G399000 Sobic007G213500 Sobic007G213500 Sobic001G104100--Sobic007G213500 Sobic003G001650--Sobic003G362800 Sobic004G218400 Sobic004G218400 Sobic003G001650--Sobic004G218400 Sobic008G170800 Sobic008G170800 Sobic003G001650--Sobic008G170800 Sobic010G042300 Sobic010G042300 Sobic003G001650--Sobic010G042300 Sobic001G454600 Sobic001G454600 Sobic003G001650--Sobic001G454600 Sobic002G001500 Sobic002G001500 Sobic003G001650--Sobic002G001500 Sobic008G192900 Sobic008G192900 Sobic003G001650--Sobic008G192900 Sobic008G103400 Sobic008G103400 Sobic003G001650--Sobic008G103400 Sobic003G001650--Sobic004G144300 Sobic010G242000 Sobic010G242000 Sobic005G025400--Sobic010G242000 Sobic003G440500 Sobic003G440500 Sobic005G025400--Sobic003G440500 Sobic005G025400--Sobic002G399000 Sobic006G170800 Sobic006G170800 Sobic005G025400--Sobic006G170800 Sobic001G350300 Sobic001G350300 Sobic005G025400--Sobic001G350300 Sobic009G223900 Sobic009G223900 Sobic005G025400--Sobic009G223900 Sobic005G025400--Sobic002G085600 Sobic004G202750 Sobic004G202750 Sobic005G025400--Sobic004G202750 Sobic001G350800 Sobic001G350800 Sobic005G025400--Sobic001G350800 Sobic001G113400--Sobic003G362800 Sobic001G113400--Sobic002G001500 Sobic001G113400--Sobic002G085600 Sobic009G208000 Sobic009G208000 Sobic001G113400--Sobic009G208000 Sobic001G113400--Sobic004G144300 Sobic003G155800 Sobic003G155800 Sobic001G113400--Sobic003G155800 Sobic001G113400--Sobic009G223900 Sobic004G181000 Sobic004G181000 Sobic001G113400--Sobic004G181000 Sobic009G192933 Sobic009G192933 Sobic001G113400--Sobic009G192933 Sobic004G007200 Sobic004G007200 Sobic006G024400--Sobic004G007200 Sobic006G024400--Sobic003G001650 Sobic006G024400--Sobic003G276400 Sobic006G024400--Sobic005G014400 Sobic003G251900 Sobic003G251900 Sobic006G024400--Sobic003G251900 Sobic006G024400--Sobic001G104100 Sobic010G201444 Sobic010G201444 Sobic006G024400--Sobic010G201444 Sobic006G024400--Sobic001G113400 Sobic006G024400--Sobic009G199900 Sobic003G362800--Sobic002G001500 Sobic003G362800--Sobic001G113400 Sobic003G362800--Sobic003G155800 Sobic003G362800--Sobic004G181000 Sobic003G362800--Sobic004G144300 Sobic003G362800--Sobic008G103400 Sobic010G000200 Sobic010G000200 Sobic003G362800--Sobic010G000200 Sobic004G173200 Sobic004G173200 Sobic003G362800--Sobic004G173200 Sobic003G362800--Sobic003G001650 Sobic008G024700 Sobic008G024700 Sobic009G049100--Sobic008G024700 Sobic001G460150 Sobic001G460150 Sobic009G049100--Sobic001G460150 Sobic003G336300 Sobic003G336300 Sobic009G049100--Sobic003G336300 Sobic004G190800 Sobic004G190800 Sobic009G049100--Sobic004G190800 Sobic009G049100--Sobic004G144300 Sobic009G252500 Sobic009G252500 Sobic009G049100--Sobic009G252500 Sobic003G298000 Sobic003G298000 Sobic009G049100--Sobic003G298000 Sobic009G049100--Sobic004G310400 Sobic007G046600 Sobic007G046600 Sobic009G049100--Sobic007G046600 Sobic005G014400--Sobic003G251900 Sobic001G093732 Sobic001G093732 Sobic005G014400--Sobic001G093732 Sobic005G014400--Sobic004G181000 Sobic005G014400--Sobic001G350800 Sobic006G165501 Sobic006G165501 Sobic005G014400--Sobic006G165501 Sobic009G112500 Sobic009G112500 Sobic005G014400--Sobic009G112500 Sobic005G014400--Sobic005G025400 Sobic008G016800 Sobic008G016800 Sobic005G014400--Sobic008G016800 Sobic005G014400--Sobic001G113400
Octagon: transcription factors


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