Gene annotation
Transcriptome id Sobic.003G309500.2,Sobic.003G309500.1
Synonym Sb03g035780, PTAC12, HMR
Functional annotation PTAC12 (PubMedID : 24676859)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
PTAC12, putative, expressed
UniProt A0A1B6Q6B3
Pfam -
Panther DB PTHR35720
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G34640 : plastid transcriptionally active 12
RAP-DB (Rice) LOC_Os01g56350.1,LOC_Os01g56350.3 : PTAC12, putative, expressed
MaizeGDB (Corn) Zm00025a027402
Brachypodium KQK09951
Barley HORVU3Hr1G074850.28 , HORVU3Hr1G074850.29 , HORVU3Hr1G074850.20 , HORVU3Hr1G074850.21 , HORVU3Hr1G074850.22 , HORVU3Hr1G074850.23 , HORVU3Hr1G074850.24 , HORVU3Hr1G074850.25 , HORVU3Hr1G074850.26 , HORVU3Hr1G074850.27 , HORVU3Hr1G074850.19 , HORVU3Hr1G074850.18 , HORVU3Hr1G074850.15 , HORVU3Hr1G074850.14 , HORVU3Hr1G074850.17 , HORVU3Hr1G074850.16 , HORVU3Hr1G074850.11 , HORVU3Hr1G074850.10 , HORVU3Hr1G074850.13 , HORVU3Hr1G074850.12 , HORVU3Hr1G074850.9 , HORVU3Hr1G074850.8 , HORVU3Hr1G074850.1 , HORVU3Hr1G074850.3 , HORVU3Hr1G074850.2 , HORVU3Hr1G074850.5 , HORVU3Hr1G074850.4 , HORVU3Hr1G074850.7 , HORVU3Hr1G074850.6
Wheat TraesCS3B02G339200 , TraesCS3B02G339200 , TraesCS3B02G339200 , TraesCS3D02G304800 , TraesCS3D02G304800 , TraesCS3A02G297500 , TraesCS3A02G297500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G169900 CDK5RAP1, putative, expressed -
2 Sobic.006G142700 expressed protein -
3 Sobic.003G194900 expressed protein -
4 Sobic.001G124500 elongation of fatty acids protein 2, putative, expressed -
5 Sobic.001G477100 purine permease, putative, expressed -
6 Sobic.004G342600 cytidylyltransferase domain containing protein, expressed K06210: nicotinamide mononucleotide adenylyltransferase
7 Sobic.002G038200 deoxyribonuclease tatD, putative, expressed K03424: TatD DNase family protein
8 Sobic.002G341600 lipase, putative, expressed -
9 Sobic.003G159000 - -
10 Sobic.009G250000 helix-loop-helix DNA-binding protein, putative, expressed -
11 Sobic.006G152900 - -
12 Sobic.010G219700 fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
13 Sobic.004G125701 - -
14 Sobic.001G540250 - -
15 Sobic.006G258600 thiol-disulphide oxidoreductase DCC, putative, expressed -
16 Sobic.002G188000 receptor kinase, putative, expressed -
17 Sobic.001G302100 holliday junction resolvase, putative, expressed K07447: putative holliday junction resolvase
18 Sobic.007G099300 - -
19 Sobic.010G150000 - -
20 Sobic.004G125600 - -


Gene co-expression network
sample Sobic003G309500 Sobic003G309500 Sobic005G169900 Sobic005G169900 Sobic003G309500--Sobic005G169900 Sobic006G142700 Sobic006G142700 Sobic003G309500--Sobic006G142700 Sobic003G194900 Sobic003G194900 Sobic003G309500--Sobic003G194900 Sobic001G124500 Sobic001G124500 Sobic003G309500--Sobic001G124500 Sobic001G477100 Sobic001G477100 Sobic003G309500--Sobic001G477100 Sobic004G342600 Sobic004G342600 Sobic003G309500--Sobic004G342600 Sobic002G038200 Sobic002G038200 Sobic003G309500--Sobic002G038200 Sobic002G341600 Sobic002G341600 Sobic003G309500--Sobic002G341600 Sobic003G159000 Sobic003G159000 Sobic003G309500--Sobic003G159000 Sobic009G250000 Sobic009G250000 Sobic005G169900--Sobic009G250000 Sobic005G169900--Sobic001G124500 Sobic001G163000 Sobic001G163000 Sobic005G169900--Sobic001G163000 Sobic005G169900--Sobic003G194900 Sobic005G169900--Sobic002G038200 Sobic005G169900--Sobic006G142700 Sobic008G013700 Sobic008G013700 Sobic005G169900--Sobic008G013700 Sobic010G150000 Sobic010G150000 Sobic005G169900--Sobic010G150000 Sobic005G169900--Sobic003G159000 Sobic006G142700--Sobic001G124500 Sobic007G099300 Sobic007G099300 Sobic006G142700--Sobic007G099300 Sobic006G152900 Sobic006G152900 Sobic006G142700--Sobic006G152900 Sobic006G142700--Sobic009G250000 Sobic006G142700--Sobic002G038200 Sobic010G219700 Sobic010G219700 Sobic006G142700--Sobic010G219700 Sobic006G142700--Sobic003G194900 Sobic006G142700--Sobic010G150000 Sobic004G019700 Sobic004G019700 Sobic006G142700--Sobic004G019700 Sobic003G194900--Sobic006G142700 Sobic003G194900--Sobic010G150000 Sobic007G094000 Sobic007G094000 Sobic003G194900--Sobic007G094000 Sobic003G194900--Sobic002G038200 Sobic003G194900--Sobic009G250000 Sobic003G194900--Sobic001G124500 Sobic003G194900--Sobic005G169900 Sobic003G194900--Sobic004G342600 Sobic007G052500 Sobic007G052500 Sobic003G194900--Sobic007G052500 Sobic001G124500--Sobic007G099300 Sobic001G124500--Sobic008G013700 Sobic001G124500--Sobic004G019700 Sobic001G124500--Sobic006G142700 Sobic004G192001 Sobic004G192001 Sobic001G124500--Sobic004G192001 Sobic004G125600 Sobic004G125600 Sobic001G124500--Sobic004G125600 Sobic004G125701 Sobic004G125701 Sobic001G124500--Sobic004G125701 Sobic010G178700 Sobic010G178700 Sobic001G124500--Sobic010G178700 Sobic001G124500--Sobic004G342600 Sobic001G477100--Sobic004G192001 Sobic001G477100--Sobic008G013700 Sobic001G520200 Sobic001G520200 Sobic001G477100--Sobic001G520200 Sobic001G477100--Sobic001G124500 Sobic001G540250 Sobic001G540250 Sobic001G477100--Sobic001G540250 Sobic003G249300 Sobic003G249300 Sobic001G477100--Sobic003G249300 Sobic001G477100--Sobic007G099300 Sobic001G477100--Sobic004G125701 Sobic001G217800 Sobic001G217800 Sobic001G477100--Sobic001G217800 Sobic004G165600 Sobic004G165600 Sobic004G342600--Sobic004G165600 Sobic004G342600--Sobic002G038200 Sobic004G342600--Sobic006G152900 Sobic004G342600--Sobic010G150000 Sobic004G342600--Sobic001G124500 Sobic002G013600 Sobic002G013600 Sobic004G342600--Sobic002G013600 Sobic004G342600--Sobic010G219700 Sobic004G342600--Sobic006G142700 Sobic004G342600--Sobic008G013700 Sobic002G038200--Sobic006G152900 Sobic002G038200--Sobic009G250000 Sobic002G038200--Sobic004G342600 Sobic009G082500 Sobic009G082500 Sobic002G038200--Sobic009G082500 Sobic002G038200--Sobic006G142700 Sobic002G038200--Sobic010G150000 Sobic002G038200--Sobic004G165600 Sobic001G494400 Sobic001G494400 Sobic002G038200--Sobic001G494400 Sobic002G282000 Sobic002G282000 Sobic002G038200--Sobic002G282000 Sobic001G302100 Sobic001G302100 Sobic002G341600--Sobic001G302100 Sobic006G258600 Sobic006G258600 Sobic002G341600--Sobic006G258600 Sobic002G341600--Sobic003G249300 Sobic002G341600--Sobic001G217800 Sobic002G341600--Sobic001G540250 Sobic002G341600--Sobic004G125701 Sobic009G029100 Sobic009G029100 Sobic002G341600--Sobic009G029100 Sobic002G341600--Sobic007G099300 Sobic003G325000 Sobic003G325000 Sobic002G341600--Sobic003G325000 Sobic003G159000--Sobic005G169900 Sobic003G159000--Sobic003G194900 Sobic007G084400 Sobic007G084400 Sobic003G159000--Sobic007G084400 Sobic003G137300 Sobic003G137300 Sobic003G159000--Sobic003G137300 Sobic003G159000--Sobic009G250000 Sobic001G353700 Sobic001G353700 Sobic003G159000--Sobic001G353700 Sobic009G177901 Sobic009G177901 Sobic003G159000--Sobic009G177901 Sobic007G114401 Sobic007G114401 Sobic003G159000--Sobic007G114401 Sobic006G087250 Sobic006G087250 Sobic003G159000--Sobic006G087250
Octagon: transcription factors


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