Gene annotation
Transcriptome id Sobic.009G250000.1,Sobic.009G250000.2
Synonym Sb09g030060, FMA
Functional annotation helix-loop-helix DNA-binding protein, putative, expressed
UniProt A0A1B6PAB9 , A0A1B6PAJ7
Pfam PF00010
Panther DB PTHR11969 PTHR11969:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G24140 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os05g50900.1 : helix-loop-helix DNA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a001021 , Zm00025a036738 , Zm00025a053505 , Zm00025a021600 , Zm00025a053227 , Zm00025a032372
Brachypodium KQK00838 , KQK05832 , KQJ84300
Barley HORVU6Hr1G067000.1 , HORVU6Hr1G067000.5 , HORVU6Hr1G067000.4 , HORVU6Hr1G067000.3 , HORVU6Hr1G067000.2 , HORVU1Hr1G071330.9 , HORVU1Hr1G071330.8 , HORVU1Hr1G071330.1 , HORVU1Hr1G071330.2 , HORVU1Hr1G071330.3 , HORVU1Hr1G071330.5 , HORVU1Hr1G071330.6 , HORVU1Hr1G071330.4 , HORVU1Hr1G071330.7
Wheat TraesCS6B02G291200 , TraesCS1A02G290800 , TraesCS1A02G290800 , TraesCS6A02G264200 , TraesCS1B02G300100 , TraesCS2B02G469700 , TraesCS4B02G347100 , TraesCS4D02G342000 , TraesCS1D02G289400 , TraesCS1D02G289400 , TraesCS2B02G469800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G038200 deoxyribonuclease tatD, putative, expressed K03424: TatD DNase family protein
2 Sobic.005G169900 CDK5RAP1, putative, expressed -
3 Sobic.006G142700 expressed protein -
4 Sobic.001G520200 glycosylphosphatidylinositol anchor biosynthesis protein 11, putative, expressed K05287: GPI ethanolamine phosphate transferase 2/3 subunit F
5 Sobic.001G124500 elongation of fatty acids protein 2, putative, expressed -
6 Sobic.006G181150 - -
7 Sobic.003G194900 expressed protein -
8 Sobic.001G163000 hypothetical protein -
9 Sobic.009G038800 SLD5 - Putative GINS complex subunit, expressed K10735: GINS4, GINS complex subunit 4
10 Sobic.009G082500 - -
11 Sobic.004G019700 expressed protein -
12 Sobic.010G150000 - -
13 Sobic.008G013700 - -
14 Sobic.007G016300 - -
15 Sobic.010G178700 transferase family protein, putative, expressed -
16 Sobic.006G152900 - -
17 Sobic.001G344450 - K02998: RP-SAe, small subunit ribosomal protein SAe
18 Sobic.002G282000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger, C3HC4 type, domain containing protein, expressed -
19 Sobic.004G342600 cytidylyltransferase domain containing protein, expressed K06210: nicotinamide mononucleotide adenylyltransferase
20 Sobic.005G001600 IBR domain containing protein, expressed -


Gene co-expression network
sample Sobic009G250000 Sobic009G250000 Sobic002G038200 Sobic002G038200 Sobic009G250000--Sobic002G038200 Sobic005G169900 Sobic005G169900 Sobic009G250000--Sobic005G169900 Sobic006G142700 Sobic006G142700 Sobic009G250000--Sobic006G142700 Sobic001G520200 Sobic001G520200 Sobic009G250000--Sobic001G520200 Sobic001G124500 Sobic001G124500 Sobic009G250000--Sobic001G124500 Sobic006G181150 Sobic006G181150 Sobic009G250000--Sobic006G181150 Sobic003G194900 Sobic003G194900 Sobic009G250000--Sobic003G194900 Sobic001G163000 Sobic001G163000 Sobic009G250000--Sobic001G163000 Sobic009G038800 Sobic009G038800 Sobic009G250000--Sobic009G038800 Sobic006G152900 Sobic006G152900 Sobic002G038200--Sobic006G152900 Sobic002G038200--Sobic009G250000 Sobic004G342600 Sobic004G342600 Sobic002G038200--Sobic004G342600 Sobic009G082500 Sobic009G082500 Sobic002G038200--Sobic009G082500 Sobic002G038200--Sobic006G142700 Sobic010G150000 Sobic010G150000 Sobic002G038200--Sobic010G150000 Sobic004G165600 Sobic004G165600 Sobic002G038200--Sobic004G165600 Sobic001G494400 Sobic001G494400 Sobic002G038200--Sobic001G494400 Sobic002G282000 Sobic002G282000 Sobic002G038200--Sobic002G282000 Sobic005G169900--Sobic009G250000 Sobic005G169900--Sobic001G124500 Sobic005G169900--Sobic001G163000 Sobic005G169900--Sobic003G194900 Sobic005G169900--Sobic002G038200 Sobic005G169900--Sobic006G142700 Sobic008G013700 Sobic008G013700 Sobic005G169900--Sobic008G013700 Sobic005G169900--Sobic010G150000 Sobic003G159000 Sobic003G159000 Sobic005G169900--Sobic003G159000 Sobic006G142700--Sobic001G124500 Sobic007G099300 Sobic007G099300 Sobic006G142700--Sobic007G099300 Sobic006G142700--Sobic006G152900 Sobic006G142700--Sobic009G250000 Sobic006G142700--Sobic002G038200 Sobic010G219700 Sobic010G219700 Sobic006G142700--Sobic010G219700 Sobic006G142700--Sobic003G194900 Sobic006G142700--Sobic010G150000 Sobic004G019700 Sobic004G019700 Sobic006G142700--Sobic004G019700 Sobic001G520200--Sobic009G250000 Sobic001G520200--Sobic002G038200 Sobic001G520200--Sobic010G150000 Sobic001G520200--Sobic001G124500 Sobic010G178700 Sobic010G178700 Sobic001G520200--Sobic010G178700 Sobic001G520200--Sobic006G142700 Sobic001G520200--Sobic009G038800 Sobic001G520200--Sobic008G013700 Sobic004G125701 Sobic004G125701 Sobic001G520200--Sobic004G125701 Sobic001G124500--Sobic007G099300 Sobic001G124500--Sobic008G013700 Sobic001G124500--Sobic004G019700 Sobic001G124500--Sobic006G142700 Sobic004G192001 Sobic004G192001 Sobic001G124500--Sobic004G192001 Sobic004G125600 Sobic004G125600 Sobic001G124500--Sobic004G125600 Sobic001G124500--Sobic004G125701 Sobic001G124500--Sobic010G178700 Sobic001G124500--Sobic004G342600 Sobic008G152100 Sobic008G152100 Sobic006G181150--Sobic008G152100 Sobic005G077532 Sobic005G077532 Sobic006G181150--Sobic005G077532 Sobic006G181150--Sobic009G250000 Sobic001G541166 Sobic001G541166 Sobic006G181150--Sobic001G541166 Sobic008G173700 Sobic008G173700 Sobic006G181150--Sobic008G173700 Sobic007G016300 Sobic007G016300 Sobic006G181150--Sobic007G016300 Sobic003G385800 Sobic003G385800 Sobic006G181150--Sobic003G385800 Sobic004G302550 Sobic004G302550 Sobic006G181150--Sobic004G302550 Sobic002G331200 Sobic002G331200 Sobic006G181150--Sobic002G331200 Sobic003G194900--Sobic006G142700 Sobic003G194900--Sobic010G150000 Sobic007G094000 Sobic007G094000 Sobic003G194900--Sobic007G094000 Sobic003G194900--Sobic002G038200 Sobic003G194900--Sobic009G250000 Sobic003G194900--Sobic001G124500 Sobic003G194900--Sobic005G169900 Sobic003G194900--Sobic004G342600 Sobic007G052500 Sobic007G052500 Sobic003G194900--Sobic007G052500 Sobic006G165900 Sobic006G165900 Sobic001G163000--Sobic006G165900 Sobic001G353700 Sobic001G353700 Sobic001G163000--Sobic001G353700 Sobic001G163000--Sobic009G250000 Sobic001G163000--Sobic005G169900 Sobic001G344450 Sobic001G344450 Sobic001G163000--Sobic001G344450 Sobic001G501500 Sobic001G501500 Sobic001G163000--Sobic001G501500 Sobic008G120066 Sobic008G120066 Sobic001G163000--Sobic008G120066 Sobic001G163000--Sobic001G520200 Sobic004G230500 Sobic004G230500 Sobic001G163000--Sobic004G230500 Sobic009G038800--Sobic008G013700 Sobic009G038800--Sobic001G124500 Sobic009G038800--Sobic009G250000 Sobic009G038800--Sobic002G038200 Sobic009G038800--Sobic001G520200 Sobic009G038800--Sobic010G178700 Sobic009G038800--Sobic004G019700 Sobic005G001600 Sobic005G001600 Sobic009G038800--Sobic005G001600 Sobic009G038800--Sobic008G173700
Octagon: transcription factors


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