Gene annotation
Transcriptome id Sobic.005G169900.1
Synonym Sb05g023010
Functional annotation CDK5RAP1, putative, expressed
UniProt A0A1Z5RJY4
Pfam PF01938 PF00919 PF04055
Panther DB PTHR11918 PTHR11918:SF43
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009451; RNA modification GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT4G36390 : Methylthiotransferase
RAP-DB (Rice) LOC_Os11g38030.1 : CDK5RAP1, putative, expressed
MaizeGDB (Corn) Zm00025a024407 , Zm00025a050791 , Zm00025a015835 , Zm00025a038226 , Zm00025a012884
Brachypodium PNT63372
Barley HORVU4Hr1G029570.2 , HORVU4Hr1G029510.5 , HORVU4Hr1G029510.4 , HORVU4Hr1G029510.1 , HORVU4Hr1G029510.3 , HORVU4Hr1G029510.2
Wheat TraesCS4D02G153900 , TraesCS4D02G153900 , TraesCS4A02G158400 , TraesCS4B02G162900
Populus -


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cDNA sequences
Sobic.005G169900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G250000 helix-loop-helix DNA-binding protein, putative, expressed -
2 Sobic.001G124500 elongation of fatty acids protein 2, putative, expressed -
3 Sobic.001G163000 hypothetical protein -
4 Sobic.003G194900 expressed protein -
5 Sobic.002G038200 deoxyribonuclease tatD, putative, expressed K03424: TatD DNase family protein
6 Sobic.006G142700 expressed protein -
7 Sobic.008G013700 - -
8 Sobic.010G150000 - -
9 Sobic.003G159000 - -
10 Sobic.004G125701 - -
11 Sobic.004G342600 cytidylyltransferase domain containing protein, expressed K06210: nicotinamide mononucleotide adenylyltransferase
12 Sobic.001G520200 glycosylphosphatidylinositol anchor biosynthesis protein 11, putative, expressed K05287: GPI ethanolamine phosphate transferase 2/3 subunit F
13 Sobic.004G125600 - -
14 Sobic.004G165600 glycosyl hydrolases family 17, putative, expressed -
15 Sobic.006G165900 cyclin, putative, expressed -
16 Sobic.007G099300 - -
17 Sobic.001G353700 expressed protein -
18 Sobic.009G038800 SLD5 - Putative GINS complex subunit, expressed K10735: GINS4, GINS complex subunit 4
19 Sobic.010G178700 transferase family protein, putative, expressed -
20 Sobic.003G309500 PTAC12(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PTAC12, putative, expressed -


Gene co-expression network
sample Sobic005G169900 Sobic005G169900 Sobic009G250000 Sobic009G250000 Sobic005G169900--Sobic009G250000 Sobic001G124500 Sobic001G124500 Sobic005G169900--Sobic001G124500 Sobic001G163000 Sobic001G163000 Sobic005G169900--Sobic001G163000 Sobic003G194900 Sobic003G194900 Sobic005G169900--Sobic003G194900 Sobic002G038200 Sobic002G038200 Sobic005G169900--Sobic002G038200 Sobic006G142700 Sobic006G142700 Sobic005G169900--Sobic006G142700 Sobic008G013700 Sobic008G013700 Sobic005G169900--Sobic008G013700 Sobic010G150000 Sobic010G150000 Sobic005G169900--Sobic010G150000 Sobic003G159000 Sobic003G159000 Sobic005G169900--Sobic003G159000 Sobic009G250000--Sobic002G038200 Sobic009G250000--Sobic005G169900 Sobic009G250000--Sobic006G142700 Sobic001G520200 Sobic001G520200 Sobic009G250000--Sobic001G520200 Sobic009G250000--Sobic001G124500 Sobic006G181150 Sobic006G181150 Sobic009G250000--Sobic006G181150 Sobic009G250000--Sobic003G194900 Sobic009G250000--Sobic001G163000 Sobic009G038800 Sobic009G038800 Sobic009G250000--Sobic009G038800 Sobic007G099300 Sobic007G099300 Sobic001G124500--Sobic007G099300 Sobic001G124500--Sobic008G013700 Sobic004G019700 Sobic004G019700 Sobic001G124500--Sobic004G019700 Sobic001G124500--Sobic006G142700 Sobic004G192001 Sobic004G192001 Sobic001G124500--Sobic004G192001 Sobic004G125600 Sobic004G125600 Sobic001G124500--Sobic004G125600 Sobic004G125701 Sobic004G125701 Sobic001G124500--Sobic004G125701 Sobic010G178700 Sobic010G178700 Sobic001G124500--Sobic010G178700 Sobic004G342600 Sobic004G342600 Sobic001G124500--Sobic004G342600 Sobic006G165900 Sobic006G165900 Sobic001G163000--Sobic006G165900 Sobic001G353700 Sobic001G353700 Sobic001G163000--Sobic001G353700 Sobic001G163000--Sobic009G250000 Sobic001G163000--Sobic005G169900 Sobic001G344450 Sobic001G344450 Sobic001G163000--Sobic001G344450 Sobic001G501500 Sobic001G501500 Sobic001G163000--Sobic001G501500 Sobic008G120066 Sobic008G120066 Sobic001G163000--Sobic008G120066 Sobic001G163000--Sobic001G520200 Sobic004G230500 Sobic004G230500 Sobic001G163000--Sobic004G230500 Sobic003G194900--Sobic006G142700 Sobic003G194900--Sobic010G150000 Sobic007G094000 Sobic007G094000 Sobic003G194900--Sobic007G094000 Sobic003G194900--Sobic002G038200 Sobic003G194900--Sobic009G250000 Sobic003G194900--Sobic001G124500 Sobic003G194900--Sobic005G169900 Sobic003G194900--Sobic004G342600 Sobic007G052500 Sobic007G052500 Sobic003G194900--Sobic007G052500 Sobic006G152900 Sobic006G152900 Sobic002G038200--Sobic006G152900 Sobic002G038200--Sobic009G250000 Sobic002G038200--Sobic004G342600 Sobic009G082500 Sobic009G082500 Sobic002G038200--Sobic009G082500 Sobic002G038200--Sobic006G142700 Sobic002G038200--Sobic010G150000 Sobic004G165600 Sobic004G165600 Sobic002G038200--Sobic004G165600 Sobic001G494400 Sobic001G494400 Sobic002G038200--Sobic001G494400 Sobic002G282000 Sobic002G282000 Sobic002G038200--Sobic002G282000 Sobic006G142700--Sobic001G124500 Sobic006G142700--Sobic007G099300 Sobic006G142700--Sobic006G152900 Sobic006G142700--Sobic009G250000 Sobic006G142700--Sobic002G038200 Sobic010G219700 Sobic010G219700 Sobic006G142700--Sobic010G219700 Sobic006G142700--Sobic003G194900 Sobic006G142700--Sobic010G150000 Sobic006G142700--Sobic004G019700 Sobic008G013700--Sobic001G124500 Sobic008G013700--Sobic004G019700 Sobic008G013700--Sobic004G192001 Sobic008G013700--Sobic004G125701 Sobic008G013700--Sobic007G099300 Sobic008G013700--Sobic004G125600 Sobic008G013700--Sobic010G178700 Sobic004G224400 Sobic004G224400 Sobic008G013700--Sobic004G224400 Sobic008G013700--Sobic009G038800 Sobic010G150000--Sobic006G152900 Sobic010G150000--Sobic004G165600 Sobic005G096201 Sobic005G096201 Sobic010G150000--Sobic005G096201 Sobic010G150000--Sobic004G342600 Sobic002G209450 Sobic002G209450 Sobic010G150000--Sobic002G209450 Sobic010G150000--Sobic002G038200 Sobic009G215350 Sobic009G215350 Sobic010G150000--Sobic009G215350 Sobic010G150000--Sobic007G099300 Sobic003G429600 Sobic003G429600 Sobic010G150000--Sobic003G429600 Sobic003G159000--Sobic005G169900 Sobic003G159000--Sobic003G194900 Sobic007G084400 Sobic007G084400 Sobic003G159000--Sobic007G084400 Sobic003G137300 Sobic003G137300 Sobic003G159000--Sobic003G137300 Sobic003G159000--Sobic009G250000 Sobic003G159000--Sobic001G353700 Sobic009G177901 Sobic009G177901 Sobic003G159000--Sobic009G177901 Sobic007G114401 Sobic007G114401 Sobic003G159000--Sobic007G114401 Sobic006G087250 Sobic006G087250 Sobic003G159000--Sobic006G087250
Octagon: transcription factors


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