Gene annotation
Transcriptome id Sobic.002G038200.1
Synonym Sb02g003300
Functional annotation deoxyribonuclease tatD, putative, expressed
UniProt C5X9M5
Pfam PF01026
Panther DB PTHR10060 PTHR10060:SF15
NCBI CDD KOG3020; TatD-related DNase
KEGG Orthology K03424; TatD DNase family protein
Gene Ontology GO:0016888; endodeoxyribonuclease activity, producing 5'-phosphomonoesters


Orthologs (automatic annotation)
TAIR AT3G52390 : TatD related DNase
RAP-DB (Rice) LOC_Os07g06440.1 : deoxyribonuclease tatD, putative, expressed
MaizeGDB (Corn) Zm00025a016154
Brachypodium PNT77055 , PNT77056 , KQK20867 , KQK20868
Barley HORVU2Hr1G059360.4 , HORVU2Hr1G059360.3 , HORVU2Hr1G059360.2 , HORVU2Hr1G059360.1 , HORVU2Hr1G059360.7 , HORVU2Hr1G059360.6 , HORVU2Hr1G059360.5 , HORVU2Hr1G059360.9 , HORVU2Hr1G059360.13 , HORVU2Hr1G059360.12 , HORVU2Hr1G059360.11 , HORVU2Hr1G059360.10 , HORVU2Hr1G059360.15 , HORVU2Hr1G059360.14
Wheat TraesCS2A02G249700 , TraesCS2D02G251100 , TraesCS2B02G271200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G152900 - -
2 Sobic.009G250000 helix-loop-helix DNA-binding protein, putative, expressed -
3 Sobic.004G342600 cytidylyltransferase domain containing protein, expressed K06210: nicotinamide mononucleotide adenylyltransferase
4 Sobic.009G082500 - -
5 Sobic.006G142700 expressed protein -
6 Sobic.010G150000 - -
7 Sobic.004G165600 glycosyl hydrolases family 17, putative, expressed -
8 Sobic.001G494400 DUF593 domain containing protein, expressed -
9 Sobic.002G282000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger, C3HC4 type, domain containing protein, expressed -
10 Sobic.005G001600 IBR domain containing protein, expressed -
11 Sobic.002G013600 expressed protein -
12 Sobic.003G194900 expressed protein -
13 Sobic.001G520200 glycosylphosphatidylinositol anchor biosynthesis protein 11, putative, expressed K05287: GPI ethanolamine phosphate transferase 2/3 subunit F
14 Sobic.002G346250 - -
15 Sobic.007G119300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
16 Sobic.008G112400 - -
17 Sobic.010G219700 fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
18 Sobic.001G096800 uncharacterized UPF0114 domain containing protein, expressed -
19 Sobic.001G124500 elongation of fatty acids protein 2, putative, expressed -
20 Sobic.005G169900 CDK5RAP1, putative, expressed -


Gene co-expression network
sample Sobic002G038200 Sobic002G038200 Sobic006G152900 Sobic006G152900 Sobic002G038200--Sobic006G152900 Sobic009G250000 Sobic009G250000 Sobic002G038200--Sobic009G250000 Sobic004G342600 Sobic004G342600 Sobic002G038200--Sobic004G342600 Sobic009G082500 Sobic009G082500 Sobic002G038200--Sobic009G082500 Sobic006G142700 Sobic006G142700 Sobic002G038200--Sobic006G142700 Sobic010G150000 Sobic010G150000 Sobic002G038200--Sobic010G150000 Sobic004G165600 Sobic004G165600 Sobic002G038200--Sobic004G165600 Sobic001G494400 Sobic001G494400 Sobic002G038200--Sobic001G494400 Sobic002G282000 Sobic002G282000 Sobic002G038200--Sobic002G282000 Sobic006G152900--Sobic002G038200 Sobic006G152900--Sobic004G165600 Sobic006G152900--Sobic010G150000 Sobic006G152900--Sobic004G342600 Sobic010G219700 Sobic010G219700 Sobic006G152900--Sobic010G219700 Sobic006G152900--Sobic006G142700 Sobic001G124500 Sobic001G124500 Sobic006G152900--Sobic001G124500 Sobic001G345366 Sobic001G345366 Sobic006G152900--Sobic001G345366 Sobic004G200000 Sobic004G200000 Sobic006G152900--Sobic004G200000 Sobic009G250000--Sobic002G038200 Sobic005G169900 Sobic005G169900 Sobic009G250000--Sobic005G169900 Sobic009G250000--Sobic006G142700 Sobic001G520200 Sobic001G520200 Sobic009G250000--Sobic001G520200 Sobic009G250000--Sobic001G124500 Sobic006G181150 Sobic006G181150 Sobic009G250000--Sobic006G181150 Sobic003G194900 Sobic003G194900 Sobic009G250000--Sobic003G194900 Sobic001G163000 Sobic001G163000 Sobic009G250000--Sobic001G163000 Sobic009G038800 Sobic009G038800 Sobic009G250000--Sobic009G038800 Sobic004G342600--Sobic004G165600 Sobic004G342600--Sobic002G038200 Sobic004G342600--Sobic006G152900 Sobic004G342600--Sobic010G150000 Sobic004G342600--Sobic001G124500 Sobic002G013600 Sobic002G013600 Sobic004G342600--Sobic002G013600 Sobic004G342600--Sobic010G219700 Sobic004G342600--Sobic006G142700 Sobic008G013700 Sobic008G013700 Sobic004G342600--Sobic008G013700 Sobic009G082500--Sobic002G282000 Sobic008G112400 Sobic008G112400 Sobic009G082500--Sobic008G112400 Sobic007G016300 Sobic007G016300 Sobic009G082500--Sobic007G016300 Sobic003G043650 Sobic003G043650 Sobic009G082500--Sobic003G043650 Sobic009G236000 Sobic009G236000 Sobic009G082500--Sobic009G236000 Sobic005G001600 Sobic005G001600 Sobic009G082500--Sobic005G001600 Sobic002G346250 Sobic002G346250 Sobic009G082500--Sobic002G346250 Sobic009G082500--Sobic004G200000 Sobic009G082500--Sobic002G038200 Sobic006G142700--Sobic001G124500 Sobic007G099300 Sobic007G099300 Sobic006G142700--Sobic007G099300 Sobic006G142700--Sobic006G152900 Sobic006G142700--Sobic009G250000 Sobic006G142700--Sobic002G038200 Sobic006G142700--Sobic010G219700 Sobic006G142700--Sobic003G194900 Sobic006G142700--Sobic010G150000 Sobic004G019700 Sobic004G019700 Sobic006G142700--Sobic004G019700 Sobic010G150000--Sobic006G152900 Sobic010G150000--Sobic004G165600 Sobic005G096201 Sobic005G096201 Sobic010G150000--Sobic005G096201 Sobic010G150000--Sobic004G342600 Sobic002G209450 Sobic002G209450 Sobic010G150000--Sobic002G209450 Sobic010G150000--Sobic002G038200 Sobic009G215350 Sobic009G215350 Sobic010G150000--Sobic009G215350 Sobic010G150000--Sobic007G099300 Sobic003G429600 Sobic003G429600 Sobic010G150000--Sobic003G429600 Sobic004G165600--Sobic004G342600 Sobic004G165600--Sobic006G152900 Sobic004G165600--Sobic002G013600 Sobic004G165600--Sobic010G150000 Sobic004G165600--Sobic005G096201 Sobic004G053600 Sobic004G053600 Sobic004G165600--Sobic004G053600 Sobic004G165600--Sobic002G038200 Sobic007G046600 Sobic007G046600 Sobic004G165600--Sobic007G046600 Sobic004G165600--Sobic001G494400 Sobic003G298000 Sobic003G298000 Sobic001G494400--Sobic003G298000 Sobic003G139100 Sobic003G139100 Sobic001G494400--Sobic003G139100 Sobic001G494400--Sobic002G013600 Sobic001G494400--Sobic002G209450 Sobic001G494400--Sobic005G096201 Sobic001G010900 Sobic001G010900 Sobic001G494400--Sobic001G010900 Sobic001G494400--Sobic002G038200 Sobic007G061500 Sobic007G061500 Sobic001G494400--Sobic007G061500 Sobic001G341900 Sobic001G341900 Sobic001G494400--Sobic001G341900 Sobic002G282000--Sobic009G082500 Sobic002G282000--Sobic009G236000 Sobic002G282000--Sobic005G001600 Sobic002G282000--Sobic002G038200 Sobic009G045100 Sobic009G045100 Sobic002G282000--Sobic009G045100 Sobic001G096800 Sobic001G096800 Sobic002G282000--Sobic001G096800 Sobic008G192800 Sobic008G192800 Sobic002G282000--Sobic008G192800 Sobic002G282000--Sobic002G346250 Sobic003G093500 Sobic003G093500 Sobic002G282000--Sobic003G093500
Octagon: transcription factors


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