Gene annotation
Transcriptome id Sobic.003G360100.1
Synonym Sb03g040200
Functional annotation expressed protein
UniProt C5XPW6
Pfam -
Panther DB PTHR34355 PTHR34355:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G07300 : josephin protein-related
RAP-DB (Rice) LOC_Os01g63500.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G030501 - -
2 Sobic.005G061200 dirigent, putative, expressed -
3 Sobic.006G197100 DNA binding protein, putative, expressed -
4 Sobic.005G107800 chalcone synthase, putative, expressed -
5 Sobic.007G176000 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
6 Sobic.002G320800 expressed protein -
7 Sobic.002G042200 gibberellin receptor GID1L2, putative, expressed -
8 Sobic.005G038300 embryogenesis transmembrane protein, putative, expressed -
9 Sobic.004G009500 transporter, major facilitator family, putative, expressed K02575: NRT, narK, nrtP, MFS transporter, NNP family, nitrate/nitrite transporter
10 Sobic.002G101900 - -
11 Sobic.009G016300 ZOS5-02 - C2H2 zinc finger protein, expressed -
12 Sobic.001G128500 LTPL73 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
13 Sobic.003G368600 terpene synthase, putative, expressed -
14 Sobic.007G178900 CXE carboxylesterase, putative, expressed -
15 Sobic.004G349125 - -
16 Sobic.002G361800 expressed protein -
17 Sobic.003G062600 limonoid UDP-glucosyltransferase, putative, expressed -
18 Sobic.004G062500 "4-coumaroyl-CoA synthetase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Brown midrib2 (Bmr2) encodes the major 4-coumarate:coenzyme A ligase involved in lignin biosynthesis(PubMedID : 22313236)@4-Coumarate: Coenzyme A Ligase (4CL)(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
19 Sobic.006G044100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
20 Sobic.004G234100 phosphoglycerate mutase, putative, expressed -


Gene co-expression network
sample Sobic003G360100 Sobic003G360100 Sobic007G030501 Sobic007G030501 Sobic003G360100--Sobic007G030501 Sobic005G061200 Sobic005G061200 Sobic003G360100--Sobic005G061200 Sobic006G197100 Sobic006G197100 Sobic003G360100--Sobic006G197100 Sobic005G107800 Sobic005G107800 Sobic003G360100--Sobic005G107800 Sobic007G176000 Sobic007G176000 Sobic003G360100--Sobic007G176000 Sobic002G320800 Sobic002G320800 Sobic003G360100--Sobic002G320800 Sobic002G042200 Sobic002G042200 Sobic003G360100--Sobic002G042200 Sobic005G038300 Sobic005G038300 Sobic003G360100--Sobic005G038300 Sobic004G009500 Sobic004G009500 Sobic003G360100--Sobic004G009500 Sobic007G176100 Sobic007G176100 Sobic007G030501--Sobic007G176100 Sobic007G030501--Sobic007G176000 Sobic007G030501--Sobic006G197100 Sobic003G368600 Sobic003G368600 Sobic007G030501--Sobic003G368600 Sobic004G349125 Sobic004G349125 Sobic007G030501--Sobic004G349125 Sobic004G139300 Sobic004G139300 Sobic007G030501--Sobic004G139300 Sobic002G261300 Sobic002G261300 Sobic007G030501--Sobic002G261300 Sobic010G252500 Sobic010G252500 Sobic007G030501--Sobic010G252500 Sobic007G030501--Sobic002G042200 Sobic009G088900 Sobic009G088900 Sobic005G061200--Sobic009G088900 Sobic005G061200--Sobic007G176000 Sobic002G154600 Sobic002G154600 Sobic005G061200--Sobic002G154600 Sobic001G261460 Sobic001G261460 Sobic005G061200--Sobic001G261460 Sobic001G514200 Sobic001G514200 Sobic005G061200--Sobic001G514200 Sobic007G218800 Sobic007G218800 Sobic005G061200--Sobic007G218800 Sobic008G055100 Sobic008G055100 Sobic005G061200--Sobic008G055100 Sobic007G178900 Sobic007G178900 Sobic005G061200--Sobic007G178900 Sobic002G261500 Sobic002G261500 Sobic005G061200--Sobic002G261500 Sobic002G003800 Sobic002G003800 Sobic006G197100--Sobic002G003800 Sobic004G042000 Sobic004G042000 Sobic006G197100--Sobic004G042000 Sobic006G197100--Sobic004G349125 Sobic001G416200 Sobic001G416200 Sobic006G197100--Sobic001G416200 Sobic004G202400 Sobic004G202400 Sobic006G197100--Sobic004G202400 Sobic001G264000 Sobic001G264000 Sobic006G197100--Sobic001G264000 Sobic003G311800 Sobic003G311800 Sobic006G197100--Sobic003G311800 Sobic006G197100--Sobic002G042200 Sobic006G197100--Sobic003G368600 Sobic005G107800--Sobic003G368600 Sobic005G107800--Sobic006G197100 Sobic005G107800--Sobic007G030501 Sobic004G348400 Sobic004G348400 Sobic005G107800--Sobic004G348400 Sobic001G500000 Sobic001G500000 Sobic005G107800--Sobic001G500000 Sobic002G287100 Sobic002G287100 Sobic005G107800--Sobic002G287100 Sobic001G481400 Sobic001G481400 Sobic005G107800--Sobic001G481400 Sobic003G062600 Sobic003G062600 Sobic005G107800--Sobic003G062600 Sobic003G011600 Sobic003G011600 Sobic005G107800--Sobic003G011600 Sobic007G176000--Sobic007G176100 Sobic007G176000--Sobic007G178900 Sobic007G176000--Sobic007G030501 Sobic002G216100 Sobic002G216100 Sobic007G176000--Sobic002G216100 Sobic007G176000--Sobic006G197100 Sobic007G176000--Sobic005G061200 Sobic002G185800 Sobic002G185800 Sobic007G176000--Sobic002G185800 Sobic007G176000--Sobic004G139300 Sobic007G176000--Sobic008G055100 Sobic003G219800 Sobic003G219800 Sobic002G320800--Sobic003G219800 Sobic001G016500 Sobic001G016500 Sobic002G320800--Sobic001G016500 Sobic006G156000 Sobic006G156000 Sobic002G320800--Sobic006G156000 Sobic003G429000 Sobic003G429000 Sobic002G320800--Sobic003G429000 Sobic003G109600 Sobic003G109600 Sobic002G320800--Sobic003G109600 Sobic002G047600 Sobic002G047600 Sobic002G320800--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic002G320800--Sobic006G216600 Sobic003G436700 Sobic003G436700 Sobic002G320800--Sobic003G436700 Sobic004G062500 Sobic004G062500 Sobic002G320800--Sobic004G062500 Sobic002G042200--Sobic006G197100 Sobic002G042200--Sobic004G139300 Sobic002G042200--Sobic002G261500 Sobic005G065900 Sobic005G065900 Sobic002G042200--Sobic005G065900 Sobic010G148800 Sobic010G148800 Sobic002G042200--Sobic010G148800 Sobic002G042200--Sobic004G202400 Sobic003G157600 Sobic003G157600 Sobic002G042200--Sobic003G157600 Sobic006G251400 Sobic006G251400 Sobic002G042200--Sobic006G251400 Sobic004G209400 Sobic004G209400 Sobic002G042200--Sobic004G209400 Sobic002G101900 Sobic002G101900 Sobic005G038300--Sobic002G101900 Sobic005G038300--Sobic004G009500 Sobic007G025000 Sobic007G025000 Sobic005G038300--Sobic007G025000 Sobic007G057400 Sobic007G057400 Sobic005G038300--Sobic007G057400 Sobic008G181000 Sobic008G181000 Sobic005G038300--Sobic008G181000 Sobic005G080400 Sobic005G080400 Sobic005G038300--Sobic005G080400 Sobic005G038300--Sobic003G360100 Sobic002G228800 Sobic002G228800 Sobic005G038300--Sobic002G228800 Sobic003G384700 Sobic003G384700 Sobic005G038300--Sobic003G384700 Sobic004G009500--Sobic005G038300 Sobic002G101400 Sobic002G101400 Sobic004G009500--Sobic002G101400 Sobic004G009500--Sobic007G176000 Sobic004G009500--Sobic007G057400 Sobic004G009500--Sobic007G030501 Sobic010G113100 Sobic010G113100 Sobic004G009500--Sobic010G113100 Sobic005G046700 Sobic005G046700 Sobic004G009500--Sobic005G046700 Sobic007G165400 Sobic007G165400 Sobic004G009500--Sobic007G165400 Sobic003G015300 Sobic003G015300 Sobic004G009500--Sobic003G015300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.