Gene annotation
Transcriptome id Sobic.003G369700.1,Sobic.003G369700.2
Synonym
Functional annotation HEAT, putative, expressed
UniProt A0A1B6Q775 , A0A1B6Q787
Pfam -
Panther DB PTHR12663 PTHR12663:SF7
NCBI CDD KOG1525; Sister chromatid cohesion complex Cohesin, subunit PDS5
KEGG Orthology K11267; sister chromatid cohesion protein PDS5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G77600 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os01g64900.1 : HEAT, putative, expressed
MaizeGDB (Corn) Zm00025a026672
Brachypodium PNT73264 , PNT73265 , PNT73266 , PNT73267 , PNT73260 , PNT73261 , PNT73262 , PNT73263 , KQK10791 , KQK10792 , PNT73257 , PNT73256 , PNT73259 , PNT73258
Barley HORVU3Hr1G082850.28 , HORVU3Hr1G082850.23 , HORVU3Hr1G082850.22 , HORVU3Hr1G082850.21 , HORVU3Hr1G082850.20 , HORVU3Hr1G082850.25 , HORVU3Hr1G082850.24 , HORVU3Hr1G082850.18 , HORVU3Hr1G082850.19 , HORVU3Hr1G082850.8 , HORVU3Hr1G082850.9 , HORVU3Hr1G082850.1 , HORVU3Hr1G082850.2 , HORVU3Hr1G082850.3 , HORVU3Hr1G082850.4 , HORVU3Hr1G082850.5 , HORVU3Hr1G082850.6 , HORVU3Hr1G082850.7 , HORVU3Hr1G082850.12 , HORVU3Hr1G082850.13 , HORVU3Hr1G082850.10 , HORVU3Hr1G082850.11 , HORVU3Hr1G082850.16 , HORVU3Hr1G082850.17 , HORVU3Hr1G082850.14 , HORVU3Hr1G082850.15
Wheat TraesCS3D02G373800 , TraesCS3D02G373800 , TraesCS3D02G373800 , TraesCS3A02G380700 , TraesCS3A02G380700 , TraesCS3A02G380700 , TraesCS3A02G380700 , TraesCS3A02G380700 , TraesCS3B02G413400 , TraesCS3B02G413400 , TraesCS3B02G413400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G201100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@kinesin motor domain containing protein, putative, expressed K10406: kinesin family member C2/C3
2 Sobic.001G442750 - -
3 Sobic.001G177400 frigida, putative, expressed -
4 Sobic.006G049000 - -
5 Sobic.002G215600 BRCA1 C Terminus domain containing protein, expressed -
6 Sobic.007G210200 Highest expression level in seeds(PubMedID : 27501690)@OsSPL14 - SBP-box gene family member, expressed -
7 Sobic.006G272100 OsFBX30 - F-box domain containing protein, expressed -
8 Sobic.003G059500 verticillium wilt disease resistance protein, putative, expressed -
9 Sobic.008G153300 RING-H2 finger protein ATL3J, putative, expressed K10663: E3 ubiquitin-protein ligase ATL4
10 Sobic.002G378900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
11 Sobic.004G167500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.002G015950 - -
13 Sobic.001G421100 - -
14 Sobic.004G000500 tetratricopeptide repeat domain containing protein, expressed K09560: suppressor of tumorigenicity protein 13
15 Sobic.004G045000 phytosulfokine receptor precursor, putative, expressed -
16 Sobic.009G193600 Eukaryotic aspartyl protease domain containing protein, expressed -
17 Sobic.001G273950 - -
18 Sobic.008G119100 - -
19 Sobic.007G187500 - -
20 Sobic.001G071500 - -


Gene co-expression network
sample Sobic003G369700 Sobic003G369700 Sobic005G201100 Sobic005G201100 Sobic003G369700--Sobic005G201100 Sobic001G442750 Sobic001G442750 Sobic003G369700--Sobic001G442750 Sobic001G177400 Sobic001G177400 Sobic003G369700--Sobic001G177400 Sobic006G049000 Sobic006G049000 Sobic003G369700--Sobic006G049000 Sobic002G215600 Sobic002G215600 Sobic003G369700--Sobic002G215600 Sobic007G210200 Sobic007G210200 Sobic003G369700--Sobic007G210200 Sobic006G272100 Sobic006G272100 Sobic003G369700--Sobic006G272100 Sobic003G059500 Sobic003G059500 Sobic003G369700--Sobic003G059500 Sobic008G153300 Sobic008G153300 Sobic003G369700--Sobic008G153300 Sobic002G076450 Sobic002G076450 Sobic005G201100--Sobic002G076450 Sobic010G051900 Sobic010G051900 Sobic005G201100--Sobic010G051900 Sobic009G047033 Sobic009G047033 Sobic005G201100--Sobic009G047033 Sobic008G119100 Sobic008G119100 Sobic005G201100--Sobic008G119100 Sobic010G000401 Sobic010G000401 Sobic005G201100--Sobic010G000401 Sobic005G201100--Sobic006G049000 Sobic005G201100--Sobic002G215600 Sobic004G007200 Sobic004G007200 Sobic005G201100--Sobic004G007200 Sobic005G201100--Sobic003G059500 Sobic003G438100 Sobic003G438100 Sobic001G442750--Sobic003G438100 Sobic001G310000 Sobic001G310000 Sobic001G442750--Sobic001G310000 Sobic008G030801 Sobic008G030801 Sobic001G442750--Sobic008G030801 Sobic002G015950 Sobic002G015950 Sobic001G442750--Sobic002G015950 Sobic001G442750--Sobic006G049000 Sobic005G205100 Sobic005G205100 Sobic001G442750--Sobic005G205100 Sobic010G168100 Sobic010G168100 Sobic001G442750--Sobic010G168100 Sobic001G071500 Sobic001G071500 Sobic001G442750--Sobic001G071500 Sobic006G161200 Sobic006G161200 Sobic001G442750--Sobic006G161200 Sobic001G177400--Sobic003G369700 Sobic006G094000 Sobic006G094000 Sobic001G177400--Sobic006G094000 Sobic003G198080 Sobic003G198080 Sobic001G177400--Sobic003G198080 Sobic001G450200 Sobic001G450200 Sobic001G177400--Sobic001G450200 Sobic006G155300 Sobic006G155300 Sobic001G177400--Sobic006G155300 Sobic001G469300 Sobic001G469300 Sobic001G177400--Sobic001G469300 Sobic004G322500 Sobic004G322500 Sobic001G177400--Sobic004G322500 Sobic001G164700 Sobic001G164700 Sobic001G177400--Sobic001G164700 Sobic004G020150 Sobic004G020150 Sobic001G177400--Sobic004G020150 Sobic001G273950 Sobic001G273950 Sobic006G049000--Sobic001G273950 Sobic006G049000--Sobic002G215600 Sobic006G049000--Sobic002G015950 Sobic006G049000--Sobic001G071500 Sobic006G049000--Sobic008G030801 Sobic006G049000--Sobic001G442750 Sobic006G049000--Sobic006G161200 Sobic004G167500 Sobic004G167500 Sobic006G049000--Sobic004G167500 Sobic009G193600 Sobic009G193600 Sobic006G049000--Sobic009G193600 Sobic002G215600--Sobic006G049000 Sobic002G215600--Sobic008G153300 Sobic002G215600--Sobic003G059500 Sobic002G215600--Sobic004G167500 Sobic004G045000 Sobic004G045000 Sobic002G215600--Sobic004G045000 Sobic003G356500 Sobic003G356500 Sobic002G215600--Sobic003G356500 Sobic002G215600--Sobic003G438100 Sobic001G468900 Sobic001G468900 Sobic002G215600--Sobic001G468900 Sobic001G367900 Sobic001G367900 Sobic002G215600--Sobic001G367900 Sobic007G210200--Sobic001G367900 Sobic005G110553 Sobic005G110553 Sobic007G210200--Sobic005G110553 Sobic003G149400 Sobic003G149400 Sobic007G210200--Sobic003G149400 Sobic009G122000 Sobic009G122000 Sobic007G210200--Sobic009G122000 Sobic008G065700 Sobic008G065700 Sobic007G210200--Sobic008G065700 Sobic003G092150 Sobic003G092150 Sobic007G210200--Sobic003G092150 Sobic004G224000 Sobic004G224000 Sobic007G210200--Sobic004G224000 Sobic004G000500 Sobic004G000500 Sobic007G210200--Sobic004G000500 Sobic003G331200 Sobic003G331200 Sobic007G210200--Sobic003G331200 Sobic006G272100--Sobic002G015950 Sobic006G272100--Sobic001G442750 Sobic006G272100--Sobic009G193600 Sobic006G272100--Sobic005G205100 Sobic006G272100--Sobic006G049000 Sobic004G071850 Sobic004G071850 Sobic006G272100--Sobic004G071850 Sobic003G260050 Sobic003G260050 Sobic006G272100--Sobic003G260050 Sobic003G111700 Sobic003G111700 Sobic006G272100--Sobic003G111700 Sobic010G011500 Sobic010G011500 Sobic006G272100--Sobic010G011500 Sobic003G059500--Sobic004G045000 Sobic003G059500--Sobic003G356500 Sobic003G059500--Sobic010G000401 Sobic003G059500--Sobic001G468900 Sobic004G089801 Sobic004G089801 Sobic003G059500--Sobic004G089801 Sobic001G005100 Sobic001G005100 Sobic003G059500--Sobic001G005100 Sobic003G059500--Sobic004G167500 Sobic003G059500--Sobic002G215600 Sobic003G149700 Sobic003G149700 Sobic003G059500--Sobic003G149700 Sobic008G153300--Sobic002G215600 Sobic007G224700 Sobic007G224700 Sobic008G153300--Sobic007G224700 Sobic010G015400 Sobic010G015400 Sobic008G153300--Sobic010G015400 Sobic010G187950 Sobic010G187950 Sobic008G153300--Sobic010G187950 Sobic004G273550 Sobic004G273550 Sobic008G153300--Sobic004G273550 Sobic008G153300--Sobic004G167500 Sobic008G153300--Sobic003G438100 Sobic009G079700 Sobic009G079700 Sobic008G153300--Sobic009G079700 Sobic008G153300--Sobic007G210200
Octagon: transcription factors


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