Gene annotation
Transcriptome id Sobic.002G378900.4,Sobic.002G378900.5,Sobic.002G378900.3,Sobic.002G378900.2
Synonym Sb02g039580
Functional annotation pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed
UniProt A0A1W0W7A7 , A0A1W0W7A8 , A0A1B6QFL3
Pfam PF04408 PF07717 PF01485 PF00271 PF00270 PF04408 PF07717 PF01485 PF00271
Panther DB PTHR18934 PTHR18934:SF81
NCBI CDD -
KEGG Orthology K12818; DHX8, ATP-dependent RNA helicase DHX8/PRP22
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding GO:0004386helicase activity GO:0004386helicase activity


Orthologs (automatic annotation)
TAIR AT4G01020 : helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related
RAP-DB (Rice) LOC_Os07g42900.1 : helicase domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a048786
Brachypodium KQK15211
Barley HORVU2Hr1G030040.3 , HORVU2Hr1G030040.2 , HORVU2Hr1G030040.1 , HORVU2Hr1G030040.7 , HORVU2Hr1G030040.6 , HORVU2Hr1G030040.5 , HORVU2Hr1G030040.4 , HORVU2Hr1G030040.21 , HORVU5Hr1G019730.7 , HORVU5Hr1G019730.6 , HORVU5Hr1G019730.5 , HORVU5Hr1G019730.4 , HORVU5Hr1G019730.3 , HORVU5Hr1G019730.2 , HORVU5Hr1G019730.1 , HORVU5Hr1G019730.9 , HORVU5Hr1G019730.8 , HORVU5Hr1G019730.11 , HORVU5Hr1G019730.10 , HORVU2Hr1G030040.22 , HORVU2Hr1G030040.23 , HORVU2Hr1G030040.20 , HORVU2Hr1G030040.9 , HORVU2Hr1G030040.8 , HORVU2Hr1G030040.13 , HORVU2Hr1G030040.12 , HORVU2Hr1G030040.11 , HORVU2Hr1G030040.10 , HORVU2Hr1G030040.17 , HORVU2Hr1G030040.16 , HORVU2Hr1G030040.15 , HORVU2Hr1G030040.14 , HORVU2Hr1G030040.19 , HORVU2Hr1G030040.18
Wheat TraesCS2D02G171200 , TraesCS5D02G087800 , TraesCS5D02G087800 , TraesCS3A02G111000 , TraesCS3D02G112900 , TraesCS5A02G074100 , TraesCS2B02G190100 , TraesCS2A02G164100 , TraesCS5B02G080500 , TraesCS2D02G171200 , TraesCS3B02G129700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G369700 HEAT, putative, expressed K11267: sister chromatid cohesion protein PDS5
2 Sobic.009G079700 C2 domain containing protein, putative, expressed -
3 Sobic.007G210200 Highest expression level in seeds(PubMedID : 27501690)@OsSPL14 - SBP-box gene family member, expressed -
4 Sobic.008G153300 RING-H2 finger protein ATL3J, putative, expressed K10663: E3 ubiquitin-protein ligase ATL4
5 Sobic.007G224700 expressed protein -
6 Sobic.010G187950 - -
7 Sobic.004G224000 - -
8 Sobic.005G110553 - -
9 Sobic.006G118150 - -
10 Sobic.010G015400 pentatricopeptide, putative, expressed -
11 Sobic.001G424650 - -
12 Sobic.010G210400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@- -
13 Sobic.008G026600 BTBN6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
14 Sobic.005G196533 - -
15 Sobic.009G088300 SHR5-receptor-like kinase, putative, expressed -
16 Sobic.001G334400 protein kinase, putative, expressed -
17 Sobic.002G308800 expressed protein -
18 Sobic.001G177400 frigida, putative, expressed -
19 Sobic.003G034100 expressed protein -
20 Sobic.005G201100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@kinesin motor domain containing protein, putative, expressed K10406: kinesin family member C2/C3


Gene co-expression network
sample Sobic002G378900 Sobic002G378900 Sobic003G369700 Sobic003G369700 Sobic002G378900--Sobic003G369700 Sobic009G079700 Sobic009G079700 Sobic002G378900--Sobic009G079700 Sobic007G210200 Sobic007G210200 Sobic002G378900--Sobic007G210200 Sobic008G153300 Sobic008G153300 Sobic002G378900--Sobic008G153300 Sobic007G224700 Sobic007G224700 Sobic002G378900--Sobic007G224700 Sobic010G187950 Sobic010G187950 Sobic002G378900--Sobic010G187950 Sobic004G224000 Sobic004G224000 Sobic002G378900--Sobic004G224000 Sobic005G110553 Sobic005G110553 Sobic002G378900--Sobic005G110553 Sobic006G118150 Sobic006G118150 Sobic002G378900--Sobic006G118150 Sobic005G201100 Sobic005G201100 Sobic003G369700--Sobic005G201100 Sobic001G442750 Sobic001G442750 Sobic003G369700--Sobic001G442750 Sobic001G177400 Sobic001G177400 Sobic003G369700--Sobic001G177400 Sobic006G049000 Sobic006G049000 Sobic003G369700--Sobic006G049000 Sobic002G215600 Sobic002G215600 Sobic003G369700--Sobic002G215600 Sobic003G369700--Sobic007G210200 Sobic006G272100 Sobic006G272100 Sobic003G369700--Sobic006G272100 Sobic003G059500 Sobic003G059500 Sobic003G369700--Sobic003G059500 Sobic003G369700--Sobic008G153300 Sobic010G210400 Sobic010G210400 Sobic009G079700--Sobic010G210400 Sobic009G079700--Sobic005G110553 Sobic001G334400 Sobic001G334400 Sobic009G079700--Sobic001G334400 Sobic006G268100 Sobic006G268100 Sobic009G079700--Sobic006G268100 Sobic002G274000 Sobic002G274000 Sobic009G079700--Sobic002G274000 Sobic004G007200 Sobic004G007200 Sobic009G079700--Sobic004G007200 Sobic009G183650 Sobic009G183650 Sobic009G079700--Sobic009G183650 Sobic004G343733 Sobic004G343733 Sobic009G079700--Sobic004G343733 Sobic009G079700--Sobic008G153300 Sobic001G367900 Sobic001G367900 Sobic007G210200--Sobic001G367900 Sobic007G210200--Sobic005G110553 Sobic003G149400 Sobic003G149400 Sobic007G210200--Sobic003G149400 Sobic009G122000 Sobic009G122000 Sobic007G210200--Sobic009G122000 Sobic008G065700 Sobic008G065700 Sobic007G210200--Sobic008G065700 Sobic003G092150 Sobic003G092150 Sobic007G210200--Sobic003G092150 Sobic007G210200--Sobic004G224000 Sobic004G000500 Sobic004G000500 Sobic007G210200--Sobic004G000500 Sobic003G331200 Sobic003G331200 Sobic007G210200--Sobic003G331200 Sobic008G153300--Sobic002G215600 Sobic008G153300--Sobic007G224700 Sobic010G015400 Sobic010G015400 Sobic008G153300--Sobic010G015400 Sobic008G153300--Sobic010G187950 Sobic004G273550 Sobic004G273550 Sobic008G153300--Sobic004G273550 Sobic004G167500 Sobic004G167500 Sobic008G153300--Sobic004G167500 Sobic003G438100 Sobic003G438100 Sobic008G153300--Sobic003G438100 Sobic008G153300--Sobic009G079700 Sobic008G153300--Sobic007G210200 Sobic007G224700--Sobic010G015400 Sobic007G224700--Sobic008G153300 Sobic007G224700--Sobic004G273550 Sobic007G224700--Sobic010G187950 Sobic007G224700--Sobic006G118150 Sobic007G224700--Sobic003G438100 Sobic007G224700--Sobic004G167500 Sobic007G224700--Sobic002G215600 Sobic007G224700--Sobic002G274000 Sobic001G228500 Sobic001G228500 Sobic010G187950--Sobic001G228500 Sobic010G187950--Sobic007G224700 Sobic002G043201 Sobic002G043201 Sobic010G187950--Sobic002G043201 Sobic010G187950--Sobic010G015400 Sobic010G187950--Sobic008G153300 Sobic010G187950--Sobic004G167500 Sobic002G426201 Sobic002G426201 Sobic010G187950--Sobic002G426201 Sobic010G187950--Sobic002G215600 Sobic010G187950--Sobic002G274000 Sobic004G224000--Sobic003G149400 Sobic004G224000--Sobic008G065700 Sobic004G224000--Sobic009G122000 Sobic001G424650 Sobic001G424650 Sobic004G224000--Sobic001G424650 Sobic004G224000--Sobic005G110553 Sobic010G249600 Sobic010G249600 Sobic004G224000--Sobic010G249600 Sobic001G492400 Sobic001G492400 Sobic004G224000--Sobic001G492400 Sobic001G503700 Sobic001G503700 Sobic004G224000--Sobic001G503700 Sobic004G224000--Sobic006G118150 Sobic005G110553--Sobic009G122000 Sobic005G110553--Sobic001G424650 Sobic005G110553--Sobic003G149400 Sobic005G110553--Sobic006G268100 Sobic005G110553--Sobic008G065700 Sobic005G110553--Sobic004G224000 Sobic005G110553--Sobic001G334400 Sobic005G110553--Sobic009G183650 Sobic005G110553--Sobic007G210200 Sobic008G016400 Sobic008G016400 Sobic006G118150--Sobic008G016400 Sobic006G118150--Sobic004G224000 Sobic006G118150--Sobic001G424650 Sobic006G118150--Sobic001G492400 Sobic006G118150--Sobic009G122000 Sobic006G118150--Sobic003G149400 Sobic007G077466 Sobic007G077466 Sobic006G118150--Sobic007G077466 Sobic006G118150--Sobic001G503700 Sobic006G165700 Sobic006G165700 Sobic006G118150--Sobic006G165700
Octagon: transcription factors


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