Gene annotation
Transcriptome id Sobic.008G026600.2,Sobic.008G026600.1
Synonym Sb08g002310
Functional annotation BTBN6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
UniProt Q84YF4 , A0A1Z5R4F2 , C5YR78
Pfam PF03000
Panther DB PTHR32370 PTHR32370:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G08570 : Phototropic-responsive NPH3 family protein
RAP-DB (Rice) LOC_Os12g02540.1 : BTBN23 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
MaizeGDB (Corn) Zm00025a052386 , Zm00025a022010 , Zm00025a053789
Brachypodium KQJ92541 , KQK21702
Barley HORVU5Hr1G046340.1 , HORVU5Hr1G046340.7 , HORVU5Hr1G046340.4 , HORVU5Hr1G046340.8 , HORVU5Hr1G046340.9 , HORVU0Hr1G011770.2 , HORVU0Hr1G011770.3 , HORVU0Hr1G011770.1 , HORVU5Hr1G046340.2 , HORVU5Hr1G046340.6 , HORVU5Hr1G046340.5 , HORVU1Hr1G055870.8 , HORVU1Hr1G055870.1 , HORVU1Hr1G055870.2 , HORVU1Hr1G055870.3 , HORVU1Hr1G055870.4 , HORVU1Hr1G055870.5 , HORVU1Hr1G055870.6 , HORVU1Hr1G055870.7
Wheat TraesCS5B02G145100 , TraesCS5D02G463700 , TraesCS5D02G463700 , TraesCS5B02G461900 , TraesCS5B02G461900 , TraesCS5B02G461900 , TraesCS5A02G146300 , TraesCS5D02G146000 , TraesCS7A02G184200 , TraesCS7A02G184200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G082800 Leucine Rich Repeat family protein, expressed -
2 Sobic.001G177400 frigida, putative, expressed -
3 Sobic.003G369700 HEAT, putative, expressed K11267: sister chromatid cohesion protein PDS5
4 Sobic.001G385200 emp24/gp25L/p24 family protein, putative, expressed -
5 Sobic.007G210200 Highest expression level in seeds(PubMedID : 27501690)@OsSPL14 - SBP-box gene family member, expressed -
6 Sobic.010G189900 IQ calmodulin-binding motif family protein, putative, expressed -
7 Sobic.001G450200 - -
8 Sobic.003G330400 - -
9 Sobic.002G378900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
10 Sobic.004G322500 - -
11 Sobic.010G090850 - -
12 Sobic.006G049000 - -
13 Sobic.006G094000 PME/invertase inhibitor, putative, expressed -
14 Sobic.001G242400 - -
15 Sobic.009G193600 Eukaryotic aspartyl protease domain containing protein, expressed -
16 Sobic.008G153300 RING-H2 finger protein ATL3J, putative, expressed K10663: E3 ubiquitin-protein ligase ATL4
17 Sobic.005G201100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@kinesin motor domain containing protein, putative, expressed K10406: kinesin family member C2/C3
18 Sobic.004G191800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.004G167500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.008G016600 hydrolase, putative, expressed K14664: IAA-amino acid hydrolase


Gene co-expression network
sample Sobic008G026600 Sobic008G026600 Sobic006G082800 Sobic006G082800 Sobic008G026600--Sobic006G082800 Sobic001G177400 Sobic001G177400 Sobic008G026600--Sobic001G177400 Sobic003G369700 Sobic003G369700 Sobic008G026600--Sobic003G369700 Sobic001G385200 Sobic001G385200 Sobic008G026600--Sobic001G385200 Sobic007G210200 Sobic007G210200 Sobic008G026600--Sobic007G210200 Sobic010G189900 Sobic010G189900 Sobic008G026600--Sobic010G189900 Sobic001G450200 Sobic001G450200 Sobic008G026600--Sobic001G450200 Sobic003G330400 Sobic003G330400 Sobic008G026600--Sobic003G330400 Sobic002G378900 Sobic002G378900 Sobic008G026600--Sobic002G378900 Sobic004G191800 Sobic004G191800 Sobic006G082800--Sobic004G191800 Sobic006G082800--Sobic008G026600 Sobic006G082800--Sobic010G189900 Sobic008G016600 Sobic008G016600 Sobic006G082800--Sobic008G016600 Sobic004G000500 Sobic004G000500 Sobic006G082800--Sobic004G000500 Sobic006G082800--Sobic001G450200 Sobic008G005200 Sobic008G005200 Sobic006G082800--Sobic008G005200 Sobic009G112800 Sobic009G112800 Sobic006G082800--Sobic009G112800 Sobic003G100400 Sobic003G100400 Sobic006G082800--Sobic003G100400 Sobic001G177400--Sobic003G369700 Sobic006G094000 Sobic006G094000 Sobic001G177400--Sobic006G094000 Sobic003G198080 Sobic003G198080 Sobic001G177400--Sobic003G198080 Sobic001G177400--Sobic001G450200 Sobic006G155300 Sobic006G155300 Sobic001G177400--Sobic006G155300 Sobic001G469300 Sobic001G469300 Sobic001G177400--Sobic001G469300 Sobic004G322500 Sobic004G322500 Sobic001G177400--Sobic004G322500 Sobic001G164700 Sobic001G164700 Sobic001G177400--Sobic001G164700 Sobic004G020150 Sobic004G020150 Sobic001G177400--Sobic004G020150 Sobic005G201100 Sobic005G201100 Sobic003G369700--Sobic005G201100 Sobic001G442750 Sobic001G442750 Sobic003G369700--Sobic001G442750 Sobic003G369700--Sobic001G177400 Sobic006G049000 Sobic006G049000 Sobic003G369700--Sobic006G049000 Sobic002G215600 Sobic002G215600 Sobic003G369700--Sobic002G215600 Sobic003G369700--Sobic007G210200 Sobic006G272100 Sobic006G272100 Sobic003G369700--Sobic006G272100 Sobic003G059500 Sobic003G059500 Sobic003G369700--Sobic003G059500 Sobic008G153300 Sobic008G153300 Sobic003G369700--Sobic008G153300 Sobic008G123400 Sobic008G123400 Sobic001G385200--Sobic008G123400 Sobic006G155400 Sobic006G155400 Sobic001G385200--Sobic006G155400 Sobic005G150250 Sobic005G150250 Sobic001G385200--Sobic005G150250 Sobic003G356500 Sobic003G356500 Sobic001G385200--Sobic003G356500 Sobic002G240300 Sobic002G240300 Sobic001G385200--Sobic002G240300 Sobic004G037401 Sobic004G037401 Sobic001G385200--Sobic004G037401 Sobic009G022600 Sobic009G022600 Sobic001G385200--Sobic009G022600 Sobic002G033100 Sobic002G033100 Sobic001G385200--Sobic002G033100 Sobic003G149700 Sobic003G149700 Sobic001G385200--Sobic003G149700 Sobic001G367900 Sobic001G367900 Sobic007G210200--Sobic001G367900 Sobic005G110553 Sobic005G110553 Sobic007G210200--Sobic005G110553 Sobic003G149400 Sobic003G149400 Sobic007G210200--Sobic003G149400 Sobic009G122000 Sobic009G122000 Sobic007G210200--Sobic009G122000 Sobic008G065700 Sobic008G065700 Sobic007G210200--Sobic008G065700 Sobic003G092150 Sobic003G092150 Sobic007G210200--Sobic003G092150 Sobic004G224000 Sobic004G224000 Sobic007G210200--Sobic004G224000 Sobic007G210200--Sobic004G000500 Sobic003G331200 Sobic003G331200 Sobic007G210200--Sobic003G331200 Sobic010G189900--Sobic008G005200 Sobic010G189900--Sobic008G016600 Sobic010G189900--Sobic004G000500 Sobic002G227100 Sobic002G227100 Sobic010G189900--Sobic002G227100 Sobic004G039100 Sobic004G039100 Sobic010G189900--Sobic004G039100 Sobic010G189900--Sobic007G210200 Sobic010G189900--Sobic008G153300 Sobic004G273550 Sobic004G273550 Sobic010G189900--Sobic004G273550 Sobic010G189900--Sobic004G191800 Sobic004G071850 Sobic004G071850 Sobic001G450200--Sobic004G071850 Sobic001G310000 Sobic001G310000 Sobic001G450200--Sobic001G310000 Sobic003G111700 Sobic003G111700 Sobic001G450200--Sobic003G111700 Sobic002G015950 Sobic002G015950 Sobic001G450200--Sobic002G015950 Sobic010G168100 Sobic010G168100 Sobic001G450200--Sobic010G168100 Sobic010G194801 Sobic010G194801 Sobic001G450200--Sobic010G194801 Sobic008G088812 Sobic008G088812 Sobic001G450200--Sobic008G088812 Sobic003G260050 Sobic003G260050 Sobic001G450200--Sobic003G260050 Sobic003G071800 Sobic003G071800 Sobic001G450200--Sobic003G071800 Sobic006G078000 Sobic006G078000 Sobic003G330400--Sobic006G078000 Sobic003G330400--Sobic008G026600 Sobic004G074100 Sobic004G074100 Sobic003G330400--Sobic004G074100 Sobic005G119300 Sobic005G119300 Sobic003G330400--Sobic005G119300 Sobic009G135400 Sobic009G135400 Sobic003G330400--Sobic009G135400 Sobic003G330400--Sobic006G082800 Sobic009G149000 Sobic009G149000 Sobic003G330400--Sobic009G149000 Sobic002G293400 Sobic002G293400 Sobic003G330400--Sobic002G293400 Sobic009G018100 Sobic009G018100 Sobic003G330400--Sobic009G018100 Sobic002G378900--Sobic003G369700 Sobic009G079700 Sobic009G079700 Sobic002G378900--Sobic009G079700 Sobic002G378900--Sobic007G210200 Sobic002G378900--Sobic008G153300 Sobic007G224700 Sobic007G224700 Sobic002G378900--Sobic007G224700 Sobic010G187950 Sobic010G187950 Sobic002G378900--Sobic010G187950 Sobic002G378900--Sobic004G224000 Sobic002G378900--Sobic005G110553 Sobic006G118150 Sobic006G118150 Sobic002G378900--Sobic006G118150
Octagon: transcription factors


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