Gene annotation
Transcriptome id Sobic.003G387300.1
Synonym Sb03g042560
Functional annotation ABC-2 type transporter domain containing protein, expressed
UniProt C5XET7
Pfam PF00005 PF01061
Panther DB PTHR19241 PTHR19241:SF230
NCBI CDD KOG0061; Transporter, ABC superfamily (Breast cancer resistance protein)
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT2G13610 : ABC-2 type transporter family protein
RAP-DB (Rice) LOC_Os01g42900.1 : ABC-2 type transporter domain containing protein, expressed
MaizeGDB (Corn) Zm00025a057510 , Zm00025a051330
Brachypodium KQJ85528 , PNT64628
Barley HORVU5Hr1G060690.4 , HORVU5Hr1G060690.1 , HORVU5Hr1G060690.2 , HORVU5Hr1G060690.3 , HORVU2Hr1G124860.4 , HORVU2Hr1G124860.3 , HORVU2Hr1G124860.2 , HORVU2Hr1G124860.1
Wheat TraesCS2A02G574700 , TraesCS5D02G211000 , TraesCS5A02G205100 , TraesCS5B02G203200
Populus -


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cDNA sequences
Sobic.003G387300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G185300 AP2 domain containing protein, expressed -
2 Sobic.002G279400 DUF630/DUF632 domains containing protein, putative, expressed -
3 Sobic.007G162400 ABC-2 type transporter domain containing protein, expressed -
4 Sobic.002G027600 receptor protein kinase CLAVATA1 precursor, putative, expressed -
5 Sobic.001G030100 GIL1, putative, expressed -
6 Sobic.004G108400 heavy-metal-associated domain-containing protein, putative, expressed -
7 Sobic.007G201900 expressed protein -
8 Sobic.004G266800 ZF-HD protein dimerisation region containing protein, expressed -
9 Sobic.010G255000 uncharacterized protein At4g06744 precursor, putative, expressed -
10 Sobic.003G290400 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
11 Sobic.001G101700 OsGIF1(Ortholog in rice:He et al. (2017))(PubMedID : 31659832)@GRF-interacting factor 1, putative, expressed -
12 Sobic.001G101900 SCP-like extracellular protein, expressed -
13 Sobic.009G127800 BZIP protein, putative, expressed -
14 Sobic.010G003300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -
15 Sobic.007G147200 OsSub56 - Putative Subtilisin homologue, expressed -
16 Sobic.009G057800 kelch repeat-containing protein, putative, expressed -
17 Sobic.006G221300 expressed protein -
18 Sobic.001G059900 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
19 Sobic.003G011200 expressed protein -
20 Sobic.004G234500 eukaryotic aspartyl protease domain containing protein, expressed -


Gene co-expression network
sample Sobic003G387300 Sobic003G387300 Sobic010G185300 Sobic010G185300 Sobic003G387300--Sobic010G185300 Sobic002G279400 Sobic002G279400 Sobic003G387300--Sobic002G279400 Sobic007G162400 Sobic007G162400 Sobic003G387300--Sobic007G162400 Sobic002G027600 Sobic002G027600 Sobic003G387300--Sobic002G027600 Sobic001G030100 Sobic001G030100 Sobic003G387300--Sobic001G030100 Sobic004G108400 Sobic004G108400 Sobic003G387300--Sobic004G108400 Sobic007G201900 Sobic007G201900 Sobic003G387300--Sobic007G201900 Sobic004G266800 Sobic004G266800 Sobic003G387300--Sobic004G266800 Sobic010G255000 Sobic010G255000 Sobic003G387300--Sobic010G255000 Sobic004G343700 Sobic004G343700 Sobic010G185300--Sobic004G343700 Sobic010G185300--Sobic003G387300 Sobic010G185300--Sobic002G027600 Sobic010G185300--Sobic002G279400 Sobic010G185300--Sobic007G162400 Sobic004G234500 Sobic004G234500 Sobic010G185300--Sobic004G234500 Sobic003G011200 Sobic003G011200 Sobic010G185300--Sobic003G011200 Sobic005G062600 Sobic005G062600 Sobic010G185300--Sobic005G062600 Sobic007G147200 Sobic007G147200 Sobic010G185300--Sobic007G147200 Sobic002G279400--Sobic007G201900 Sobic009G057800 Sobic009G057800 Sobic002G279400--Sobic009G057800 Sobic009G127800 Sobic009G127800 Sobic002G279400--Sobic009G127800 Sobic006G221300 Sobic006G221300 Sobic002G279400--Sobic006G221300 Sobic005G153000 Sobic005G153000 Sobic002G279400--Sobic005G153000 Sobic001G101700 Sobic001G101700 Sobic002G279400--Sobic001G101700 Sobic009G188500 Sobic009G188500 Sobic002G279400--Sobic009G188500 Sobic001G054700 Sobic001G054700 Sobic002G279400--Sobic001G054700 Sobic009G208300 Sobic009G208300 Sobic002G279400--Sobic009G208300 Sobic007G162400--Sobic006G221300 Sobic007G162400--Sobic009G127800 Sobic007G162400--Sobic001G054700 Sobic007G162400--Sobic004G108400 Sobic007G162400--Sobic001G101700 Sobic007G162400--Sobic002G027600 Sobic007G162400--Sobic007G201900 Sobic003G290400 Sobic003G290400 Sobic007G162400--Sobic003G290400 Sobic009G143200 Sobic009G143200 Sobic007G162400--Sobic009G143200 Sobic002G006100 Sobic002G006100 Sobic002G027600--Sobic002G006100 Sobic006G272800 Sobic006G272800 Sobic002G027600--Sobic006G272800 Sobic004G267600 Sobic004G267600 Sobic002G027600--Sobic004G267600 Sobic005G032600 Sobic005G032600 Sobic002G027600--Sobic005G032600 Sobic002G284100 Sobic002G284100 Sobic002G027600--Sobic002G284100 Sobic006G142500 Sobic006G142500 Sobic002G027600--Sobic006G142500 Sobic002G027600--Sobic009G127800 Sobic003G351900 Sobic003G351900 Sobic002G027600--Sobic003G351900 Sobic001G079900 Sobic001G079900 Sobic002G027600--Sobic001G079900 Sobic001G030100--Sobic003G387300 Sobic006G129800 Sobic006G129800 Sobic001G030100--Sobic006G129800 Sobic005G210600 Sobic005G210600 Sobic001G030100--Sobic005G210600 Sobic004G180400 Sobic004G180400 Sobic001G030100--Sobic004G180400 Sobic006G069500 Sobic006G069500 Sobic001G030100--Sobic006G069500 Sobic004G154900 Sobic004G154900 Sobic001G030100--Sobic004G154900 Sobic005G188400 Sobic005G188400 Sobic001G030100--Sobic005G188400 Sobic009G178900 Sobic009G178900 Sobic001G030100--Sobic009G178900 Sobic002G154300 Sobic002G154300 Sobic001G030100--Sobic002G154300 Sobic004G108400--Sobic001G054700 Sobic004G108400--Sobic006G221300 Sobic004G108400--Sobic009G143200 Sobic001G452900 Sobic001G452900 Sobic004G108400--Sobic001G452900 Sobic007G008300 Sobic007G008300 Sobic004G108400--Sobic007G008300 Sobic004G108400--Sobic009G127800 Sobic004G108400--Sobic007G162400 Sobic002G050700 Sobic002G050700 Sobic004G108400--Sobic002G050700 Sobic009G101100 Sobic009G101100 Sobic004G108400--Sobic009G101100 Sobic007G201900--Sobic009G057800 Sobic007G201900--Sobic001G101700 Sobic007G201900--Sobic010G255000 Sobic002G112000 Sobic002G112000 Sobic007G201900--Sobic002G112000 Sobic007G201900--Sobic002G279400 Sobic001G101900 Sobic001G101900 Sobic007G201900--Sobic001G101900 Sobic003G244000 Sobic003G244000 Sobic007G201900--Sobic003G244000 Sobic007G201900--Sobic009G143200 Sobic007G201900--Sobic007G147200 Sobic004G266800--Sobic002G279400 Sobic002G221400 Sobic002G221400 Sobic004G266800--Sobic002G221400 Sobic004G266800--Sobic004G108400 Sobic004G313900 Sobic004G313900 Sobic004G266800--Sobic004G313900 Sobic004G266800--Sobic003G387300 Sobic006G147900 Sobic006G147900 Sobic004G266800--Sobic006G147900 Sobic002G394200 Sobic002G394200 Sobic004G266800--Sobic002G394200 Sobic004G266800--Sobic009G057800 Sobic004G266800--Sobic009G188500 Sobic010G255000--Sobic007G147200 Sobic010G255000--Sobic001G101700 Sobic010G255000--Sobic007G201900 Sobic003G046400 Sobic003G046400 Sobic010G255000--Sobic003G046400 Sobic002G255600 Sobic002G255600 Sobic010G255000--Sobic002G255600 Sobic007G137101 Sobic007G137101 Sobic010G255000--Sobic007G137101 Sobic001G106500 Sobic001G106500 Sobic010G255000--Sobic001G106500 Sobic007G121200 Sobic007G121200 Sobic010G255000--Sobic007G121200 Sobic010G220800 Sobic010G220800 Sobic010G255000--Sobic010G220800
Octagon: transcription factors


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