Gene annotation
Transcriptome id Sobic.003G430900.1
Synonym CLT1, Sb03g046260
Functional annotation expressed protein
UniProt C5XII0
Pfam PF06027
Panther DB PTHR31326 PTHR31326:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT5G19380 : CRT (chloroquine-resistance transporter)-like transporter 1
RAP-DB (Rice) LOC_Os01g72570.2 : expressed protein
MaizeGDB (Corn) Zm00025a025933 , Zm00025a039100
Brachypodium PNT73615 , KQK11613 , PNT73616
Barley HORVU3Hr1G109300.10 , HORVU3Hr1G109300.3 , HORVU3Hr1G109300.14 , HORVU3Hr1G109300.17 , HORVU3Hr1G109300.11 , HORVU3Hr1G109300.13 , HORVU3Hr1G109300.18 , HORVU3Hr1G109300.8 , HORVU3Hr1G109300.9 , HORVU3Hr1G109300.6 , HORVU3Hr1G109300.7 , HORVU3Hr1G109300.4 , HORVU3Hr1G109300.5 , HORVU3Hr1G109300.12
Wheat TraesCS3A02G492900 , TraesCS3D02G500600 , TraesCS3D02G500600
Populus -


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cDNA sequences
Sobic.003G430900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G107000 phosphatidylinositol-4-phosphate 5-Kinase family protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
2 Sobic.006G214200 aminotransferase, putative, expressed K16871: 4-aminobutyrate---pyruvate transaminase
3 Sobic.001G512800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
4 Sobic.003G138200 expressed protein -
5 Sobic.001G150200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsWAK53b - OsWAK receptor-like protein kinase, expressed -
6 Sobic.002G215800 ctr copper transporter family protein, putative, expressed K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1
7 Sobic.008G153400 peptidase, putative, expressed K18151: ureidoglycolate amidohydrolase
8 Sobic.001G249300 Cf2/Cf5 disease resistance protein, putative, expressed -
9 Sobic.001G298500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.009G211400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
11 Sobic.003G257100 YT521-B-like family domain containing protein, expressed -
12 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
13 Sobic.004G351300 protein binding protein, putative, expressed -
14 Sobic.002G266200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
16 Sobic.005G059600 WD domain, G-beta repeat domain containing protein, expressed -
17 Sobic.009G000200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipid-transporting ATPase, putative, expressed K01530: phospholipid-translocating ATPase
18 Sobic.009G029600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed K01919: glutamate--cysteine ligase
19 Sobic.006G125400 steroid nuclear receptor, ligand-binding, putative, expressed -
20 Sobic.002G156000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed K14724: SLC9A8, solute carrier family 9 (sodium/hydrogen exchanger), member 8


Gene co-expression network
sample Sobic003G430900 Sobic003G430900 Sobic010G107000 Sobic010G107000 Sobic003G430900--Sobic010G107000 Sobic006G214200 Sobic006G214200 Sobic003G430900--Sobic006G214200 Sobic001G512800 Sobic001G512800 Sobic003G430900--Sobic001G512800 Sobic003G138200 Sobic003G138200 Sobic003G430900--Sobic003G138200 Sobic001G150200 Sobic001G150200 Sobic003G430900--Sobic001G150200 Sobic002G215800 Sobic002G215800 Sobic003G430900--Sobic002G215800 Sobic008G153400 Sobic008G153400 Sobic003G430900--Sobic008G153400 Sobic001G249300 Sobic001G249300 Sobic003G430900--Sobic001G249300 Sobic001G298500 Sobic001G298500 Sobic003G430900--Sobic001G298500 Sobic009G211400 Sobic009G211400 Sobic010G107000--Sobic009G211400 Sobic001G325200 Sobic001G325200 Sobic010G107000--Sobic001G325200 Sobic009G193700 Sobic009G193700 Sobic010G107000--Sobic009G193700 Sobic003G355600 Sobic003G355600 Sobic010G107000--Sobic003G355600 Sobic003G219600 Sobic003G219600 Sobic010G107000--Sobic003G219600 Sobic010G107000--Sobic001G150200 Sobic009G029600 Sobic009G029600 Sobic010G107000--Sobic009G029600 Sobic009G226300 Sobic009G226300 Sobic010G107000--Sobic009G226300 Sobic010G107000--Sobic003G138200 Sobic003G257100 Sobic003G257100 Sobic006G214200--Sobic003G257100 Sobic006G214200--Sobic009G029600 Sobic006G214200--Sobic010G107000 Sobic006G214200--Sobic008G153400 Sobic006G214200--Sobic003G355600 Sobic006G214200--Sobic009G211400 Sobic006G199000 Sobic006G199000 Sobic006G214200--Sobic006G199000 Sobic006G204900 Sobic006G204900 Sobic006G214200--Sobic006G204900 Sobic006G214200--Sobic003G138200 Sobic001G512800--Sobic003G138200 Sobic002G322900 Sobic002G322900 Sobic001G512800--Sobic002G322900 Sobic010G206000 Sobic010G206000 Sobic001G512800--Sobic010G206000 Sobic004G246200 Sobic004G246200 Sobic001G512800--Sobic004G246200 Sobic002G409500 Sobic002G409500 Sobic001G512800--Sobic002G409500 Sobic001G512800--Sobic009G029600 Sobic010G248900 Sobic010G248900 Sobic001G512800--Sobic010G248900 Sobic009G054500 Sobic009G054500 Sobic001G512800--Sobic009G054500 Sobic005G079900 Sobic005G079900 Sobic001G512800--Sobic005G079900 Sobic003G138200--Sobic001G249300 Sobic003G138200--Sobic009G226300 Sobic007G187300 Sobic007G187300 Sobic003G138200--Sobic007G187300 Sobic003G138200--Sobic001G150200 Sobic003G138200--Sobic009G054500 Sobic003G138200--Sobic009G211400 Sobic002G215700 Sobic002G215700 Sobic003G138200--Sobic002G215700 Sobic004G260000 Sobic004G260000 Sobic003G138200--Sobic004G260000 Sobic003G138200--Sobic001G325200 Sobic001G150200--Sobic003G138200 Sobic001G150200--Sobic009G226300 Sobic001G150200--Sobic001G249300 Sobic001G150200--Sobic010G107000 Sobic003G105800 Sobic003G105800 Sobic001G150200--Sobic003G105800 Sobic001G150200--Sobic004G260000 Sobic001G150200--Sobic001G325200 Sobic001G150200--Sobic009G054500 Sobic001G150200--Sobic009G211400 Sobic002G215800--Sobic009G029600 Sobic002G215800--Sobic009G211400 Sobic002G215800--Sobic003G219600 Sobic004G255000 Sobic004G255000 Sobic002G215800--Sobic004G255000 Sobic002G215800--Sobic001G249300 Sobic001G280200 Sobic001G280200 Sobic002G215800--Sobic001G280200 Sobic002G215800--Sobic003G138200 Sobic002G215800--Sobic004G260000 Sobic002G215800--Sobic010G107000 Sobic001G150600 Sobic001G150600 Sobic008G153400--Sobic001G150600 Sobic008G153400--Sobic006G199000 Sobic006G030700 Sobic006G030700 Sobic008G153400--Sobic006G030700 Sobic008G153400--Sobic001G325200 Sobic003G398100 Sobic003G398100 Sobic008G153400--Sobic003G398100 Sobic008G153400--Sobic003G257100 Sobic003G087200 Sobic003G087200 Sobic008G153400--Sobic003G087200 Sobic006G091700 Sobic006G091700 Sobic008G153400--Sobic006G091700 Sobic008G153400--Sobic009G226300 Sobic001G249300--Sobic001G280200 Sobic001G249300--Sobic009G226300 Sobic001G249300--Sobic009G054500 Sobic001G249300--Sobic007G187300 Sobic001G249300--Sobic003G138200 Sobic001G249300--Sobic006G030700 Sobic001G249300--Sobic004G255000 Sobic003G259200 Sobic003G259200 Sobic001G249300--Sobic003G259200 Sobic001G249300--Sobic009G029600 Sobic009G000200 Sobic009G000200 Sobic001G298500--Sobic009G000200 Sobic009G079300 Sobic009G079300 Sobic001G298500--Sobic009G079300 Sobic006G271200 Sobic006G271200 Sobic001G298500--Sobic006G271200 Sobic001G350700 Sobic001G350700 Sobic001G298500--Sobic001G350700 Sobic008G189200 Sobic008G189200 Sobic001G298500--Sobic008G189200 Sobic004G004200 Sobic004G004200 Sobic001G298500--Sobic004G004200 Sobic001G298500--Sobic010G107000 Sobic007G092700 Sobic007G092700 Sobic001G298500--Sobic007G092700 Sobic006G125400 Sobic006G125400 Sobic001G298500--Sobic006G125400
Octagon: transcription factors


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