Gene annotation
Transcriptome id Sobic.004G076800.1
Synonym Sb04g006350
Functional annotation expressed protein
UniProt C5XF19
Pfam PF14009
Panther DB PTHR33052 PTHR33052:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G50800 : -
RAP-DB (Rice) LOC_Os02g09990.1 : expressed protein
MaizeGDB (Corn) Zm00025a019665
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G052500 receptor-like kinase, putative, expressed -
2 Sobic.002G079801 - -
3 Sobic.003G079800 Ser/Thr protein kinase, putative, expressed -
4 Sobic.006G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
5 Sobic.010G054500 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed -
6 Sobic.004G244300 formin-like protein 3 precursor, putative, expressed -
7 Sobic.001G184500 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR55 - Auxin-responsive SAUR gene family member, expressed -
8 Sobic.001G140200 Homeobox domain containing protein, expressed -
9 Sobic.001G075101 - -
10 Sobic.001G075800 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
11 Sobic.001G509400 - -
12 Sobic.007G169600 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
13 Sobic.002G037400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
14 Sobic.008G044750 - -
15 Sobic.002G325600 ankyrin repeat family protein, putative, expressed -
16 Sobic.010G016500 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@dehydration-responsive element-binding protein, putative, expressed -
17 Sobic.002G023900 Homeobox domain containing protein, expressed -
18 Sobic.009G128300 CUE domain containing protein, expressed -
19 Sobic.004G281200 chitin-inducible gibberellin-responsive protein 2, putative, expressed -
20 Sobic.002G331450 - -


Gene co-expression network
sample Sobic004G076800 Sobic004G076800 Sobic008G052500 Sobic008G052500 Sobic004G076800--Sobic008G052500 Sobic002G079801 Sobic002G079801 Sobic004G076800--Sobic002G079801 Sobic003G079800 Sobic003G079800 Sobic004G076800--Sobic003G079800 Sobic006G203000 Sobic006G203000 Sobic004G076800--Sobic006G203000 Sobic010G054500 Sobic010G054500 Sobic004G076800--Sobic010G054500 Sobic004G244300 Sobic004G244300 Sobic004G076800--Sobic004G244300 Sobic001G184500 Sobic001G184500 Sobic004G076800--Sobic001G184500 Sobic001G140200 Sobic001G140200 Sobic004G076800--Sobic001G140200 Sobic001G075101 Sobic001G075101 Sobic004G076800--Sobic001G075101 Sobic008G052500--Sobic010G054500 Sobic008G052500--Sobic001G140200 Sobic002G325600 Sobic002G325600 Sobic008G052500--Sobic002G325600 Sobic005G016900 Sobic005G016900 Sobic008G052500--Sobic005G016900 Sobic007G143100 Sobic007G143100 Sobic008G052500--Sobic007G143100 Sobic001G509400 Sobic001G509400 Sobic008G052500--Sobic001G509400 Sobic007G169600 Sobic007G169600 Sobic008G052500--Sobic007G169600 Sobic008G052500--Sobic001G075101 Sobic007G143200 Sobic007G143200 Sobic008G052500--Sobic007G143200 Sobic002G079801--Sobic003G079800 Sobic008G044750 Sobic008G044750 Sobic002G079801--Sobic008G044750 Sobic002G079801--Sobic001G184500 Sobic003G198150 Sobic003G198150 Sobic002G079801--Sobic003G198150 Sobic009G183000 Sobic009G183000 Sobic002G079801--Sobic009G183000 Sobic002G079801--Sobic001G140200 Sobic009G128300 Sobic009G128300 Sobic002G079801--Sobic009G128300 Sobic010G101700 Sobic010G101700 Sobic002G079801--Sobic010G101700 Sobic002G079801--Sobic001G509400 Sobic003G079800--Sobic009G128300 Sobic003G079800--Sobic001G509400 Sobic002G182800 Sobic002G182800 Sobic003G079800--Sobic002G182800 Sobic003G233900 Sobic003G233900 Sobic003G079800--Sobic003G233900 Sobic003G079800--Sobic008G044750 Sobic003G227600 Sobic003G227600 Sobic003G079800--Sobic003G227600 Sobic003G040800 Sobic003G040800 Sobic003G079800--Sobic003G040800 Sobic002G331450 Sobic002G331450 Sobic003G079800--Sobic002G331450 Sobic003G079800--Sobic001G075101 Sobic002G037400 Sobic002G037400 Sobic006G203000--Sobic002G037400 Sobic006G203000--Sobic001G075101 Sobic006G203000--Sobic007G169600 Sobic006G203000--Sobic002G331450 Sobic003G083000 Sobic003G083000 Sobic006G203000--Sobic003G083000 Sobic006G203000--Sobic002G325600 Sobic006G026400 Sobic006G026400 Sobic006G203000--Sobic006G026400 Sobic002G023900 Sobic002G023900 Sobic006G203000--Sobic002G023900 Sobic002G110200 Sobic002G110200 Sobic006G203000--Sobic002G110200 Sobic010G054500--Sobic008G052500 Sobic010G054500--Sobic001G140200 Sobic010G054500--Sobic005G016900 Sobic010G054500--Sobic007G143100 Sobic007G073750 Sobic007G073750 Sobic010G054500--Sobic007G073750 Sobic010G054500--Sobic007G143200 Sobic009G076700 Sobic009G076700 Sobic010G054500--Sobic009G076700 Sobic010G054500--Sobic007G169600 Sobic010G054500--Sobic002G325600 Sobic004G281200 Sobic004G281200 Sobic004G244300--Sobic004G281200 Sobic006G194600 Sobic006G194600 Sobic004G244300--Sobic006G194600 Sobic010G016500 Sobic010G016500 Sobic004G244300--Sobic010G016500 Sobic004G244300--Sobic006G203000 Sobic004G244100 Sobic004G244100 Sobic004G244300--Sobic004G244100 Sobic009G167000 Sobic009G167000 Sobic004G244300--Sobic009G167000 Sobic002G217100 Sobic002G217100 Sobic004G244300--Sobic002G217100 Sobic004G244300--Sobic002G037400 Sobic004G244300--Sobic001G075101 Sobic001G184500--Sobic010G101700 Sobic001G184500--Sobic002G079801 Sobic003G015100 Sobic003G015100 Sobic001G184500--Sobic003G015100 Sobic001G184500--Sobic008G052500 Sobic008G065400 Sobic008G065400 Sobic001G184500--Sobic008G065400 Sobic001G278600 Sobic001G278600 Sobic001G184500--Sobic001G278600 Sobic007G005000 Sobic007G005000 Sobic001G184500--Sobic007G005000 Sobic003G266700 Sobic003G266700 Sobic001G184500--Sobic003G266700 Sobic002G171400 Sobic002G171400 Sobic001G184500--Sobic002G171400 Sobic001G140200--Sobic010G054500 Sobic001G140200--Sobic008G052500 Sobic001G140200--Sobic001G509400 Sobic001G140200--Sobic008G044750 Sobic001G140200--Sobic008G065400 Sobic001G140200--Sobic002G325600 Sobic001G140200--Sobic001G075101 Sobic001G140200--Sobic007G169600 Sobic005G079700 Sobic005G079700 Sobic001G140200--Sobic005G079700 Sobic001G075101--Sobic007G169600 Sobic001G075101--Sobic006G203000 Sobic001G075101--Sobic002G037400 Sobic001G075101--Sobic003G083000 Sobic001G075101--Sobic002G331450 Sobic007G153001 Sobic007G153001 Sobic001G075101--Sobic007G153001 Sobic001G075101--Sobic002G325600 Sobic001G075101--Sobic001G509400 Sobic001G075101--Sobic002G182800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.