Gene annotation
Transcriptome id Sobic.004G145900.1
Synonym Sb04g019010
Functional annotation expressed protein
UniProt C5XRQ6
Pfam PF05078
Panther DB PTHR31621 PTHR31621:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G46090 : Protein of unknown function (DUF679)
RAP-DB (Rice) LOC_Os02g27800.1 : expressed protein
MaizeGDB (Corn) Zm00025a020335
Brachypodium KQJ99490
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G310300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
2 Sobic.003G311800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@xylosyltransferase, putative, expressed -
3 Sobic.010G008400 bark storage protein A precursor, putative, expressed -
4 Sobic.009G232100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
5 Sobic.001G049900 UDP-rhamnose rhamnosyltransferase, putative, expressed -
6 Sobic.009G109000 expressed protein -
7 Sobic.010G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@plastocyanin-like domain containing protein, putative, expressed -
8 Sobic.002G003800 plastocyanin-like domain containing protein, putative, expressed -
9 Sobic.004G310200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@receptor-like protein kinase like protein, putative, expressed -
10 Sobic.008G009400 - -
11 Sobic.006G203700 EF hand family protein, putative, expressed -
12 Sobic.004G295100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09873: aquaporin TIP
13 Sobic.001G304201 - -
14 Sobic.004G297900 plastocyanin-like domain containing protein, putative, expressed -
15 Sobic.001G514200 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
16 Sobic.003G119500 expressed protein -
17 Sobic.001G304100 LTPL144 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
18 Sobic.002G213600 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR38 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
19 Sobic.003G299300 expressed protein -
20 Sobic.009G188000 NADPH-dependent FMN reductase domain containing protein, expressed K03809: NAD(P)H dehydrogenase (quinone)


Gene co-expression network
sample Sobic004G145900 Sobic004G145900 Sobic001G310300 Sobic001G310300 Sobic004G145900--Sobic001G310300 Sobic003G311800 Sobic003G311800 Sobic004G145900--Sobic003G311800 Sobic010G008400 Sobic010G008400 Sobic004G145900--Sobic010G008400 Sobic009G232100 Sobic009G232100 Sobic004G145900--Sobic009G232100 Sobic001G049900 Sobic001G049900 Sobic004G145900--Sobic001G049900 Sobic009G109000 Sobic009G109000 Sobic004G145900--Sobic009G109000 Sobic010G085800 Sobic010G085800 Sobic004G145900--Sobic010G085800 Sobic002G003800 Sobic002G003800 Sobic004G145900--Sobic002G003800 Sobic004G310200 Sobic004G310200 Sobic004G145900--Sobic004G310200 Sobic006G203700 Sobic006G203700 Sobic001G310300--Sobic006G203700 Sobic001G310300--Sobic010G085800 Sobic001G514200 Sobic001G514200 Sobic001G310300--Sobic001G514200 Sobic008G055100 Sobic008G055100 Sobic001G310300--Sobic008G055100 Sobic001G481000 Sobic001G481000 Sobic001G310300--Sobic001G481000 Sobic001G310300--Sobic009G109000 Sobic001G310300--Sobic010G008400 Sobic008G005100 Sobic008G005100 Sobic001G310300--Sobic008G005100 Sobic003G160700 Sobic003G160700 Sobic001G310300--Sobic003G160700 Sobic004G297900 Sobic004G297900 Sobic003G311800--Sobic004G297900 Sobic003G311800--Sobic002G003800 Sobic003G311800--Sobic001G049900 Sobic003G311800--Sobic009G109000 Sobic006G197100 Sobic006G197100 Sobic003G311800--Sobic006G197100 Sobic006G274933 Sobic006G274933 Sobic003G311800--Sobic006G274933 Sobic002G183700 Sobic002G183700 Sobic003G311800--Sobic002G183700 Sobic007G090469 Sobic007G090469 Sobic003G311800--Sobic007G090469 Sobic004G042000 Sobic004G042000 Sobic003G311800--Sobic004G042000 Sobic002G176100 Sobic002G176100 Sobic010G008400--Sobic002G176100 Sobic010G008400--Sobic002G003800 Sobic003G319500 Sobic003G319500 Sobic010G008400--Sobic003G319500 Sobic002G327300 Sobic002G327300 Sobic010G008400--Sobic002G327300 Sobic004G046200 Sobic004G046200 Sobic010G008400--Sobic004G046200 Sobic001G500000 Sobic001G500000 Sobic010G008400--Sobic001G500000 Sobic010G008400--Sobic010G085800 Sobic002G017800 Sobic002G017800 Sobic010G008400--Sobic002G017800 Sobic009G111000 Sobic009G111000 Sobic010G008400--Sobic009G111000 Sobic009G088900 Sobic009G088900 Sobic009G232100--Sobic009G088900 Sobic009G232100--Sobic001G049900 Sobic009G188000 Sobic009G188000 Sobic009G232100--Sobic009G188000 Sobic009G232100--Sobic001G310300 Sobic009G232100--Sobic010G085800 Sobic001G361600 Sobic001G361600 Sobic009G232100--Sobic001G361600 Sobic002G396400 Sobic002G396400 Sobic009G232100--Sobic002G396400 Sobic001G304100 Sobic001G304100 Sobic009G232100--Sobic001G304100 Sobic009G232100--Sobic009G109000 Sobic001G049900--Sobic003G311800 Sobic001G049900--Sobic002G003800 Sobic010G184800 Sobic010G184800 Sobic001G049900--Sobic010G184800 Sobic001G049900--Sobic009G109000 Sobic001G430100 Sobic001G430100 Sobic001G049900--Sobic001G430100 Sobic001G049900--Sobic006G197100 Sobic001G049900--Sobic008G055100 Sobic001G049900--Sobic004G042000 Sobic001G049900--Sobic004G310200 Sobic009G109000--Sobic003G311800 Sobic009G109000--Sobic004G297900 Sobic009G109000--Sobic001G049900 Sobic009G109000--Sobic008G055100 Sobic003G053400 Sobic003G053400 Sobic009G109000--Sobic003G053400 Sobic003G411200 Sobic003G411200 Sobic009G109000--Sobic003G411200 Sobic004G348800 Sobic004G348800 Sobic009G109000--Sobic004G348800 Sobic008G009400 Sobic008G009400 Sobic009G109000--Sobic008G009400 Sobic009G109000--Sobic001G430100 Sobic001G059700 Sobic001G059700 Sobic010G085800--Sobic001G059700 Sobic010G085800--Sobic001G310300 Sobic010G085800--Sobic010G008400 Sobic010G085800--Sobic009G109000 Sobic010G085800--Sobic004G297900 Sobic010G085800--Sobic008G009400 Sobic010G085800--Sobic009G088900 Sobic010G085800--Sobic003G311800 Sobic007G218800 Sobic007G218800 Sobic010G085800--Sobic007G218800 Sobic002G003800--Sobic006G197100 Sobic002G003800--Sobic004G042000 Sobic002G003800--Sobic003G311800 Sobic001G302600 Sobic001G302600 Sobic002G003800--Sobic001G302600 Sobic002G003800--Sobic001G049900 Sobic001G416200 Sobic001G416200 Sobic002G003800--Sobic001G416200 Sobic002G003800--Sobic004G310200 Sobic003G079400 Sobic003G079400 Sobic002G003800--Sobic003G079400 Sobic002G003800--Sobic001G304100 Sobic004G310200--Sobic002G003800 Sobic004G310200--Sobic003G311800 Sobic004G310200--Sobic004G042000 Sobic004G310200--Sobic001G304100 Sobic004G310200--Sobic001G049900 Sobic004G310200--Sobic001G500000 Sobic010G252401 Sobic010G252401 Sobic004G310200--Sobic010G252401 Sobic002G213600 Sobic002G213600 Sobic004G310200--Sobic002G213600 Sobic003G084400 Sobic003G084400 Sobic004G310200--Sobic003G084400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.