Gene annotation
Transcriptome id Sobic.004G161200.1
Synonym Sb04g021320
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
protein binding protein, putative, expressed
UniProt C5XTB0
Pfam PF13920
Panther DB PTHR10044 PTHR10044:SF137
NCBI CDD KOG1100; Predicted E3 ubiquitin ligase
KEGG Orthology K19042; E3 ubiquitin-protein ligase BOI and related proteins
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G79110 : zinc ion binding
RAP-DB (Rice) LOC_Os04g33030.1 : protein binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a055976 , Zm00025a055972 , Zm00025a011607 , Zm00025a020494 , Zm00025a020495 , Zm00025a033559
Brachypodium KQJ99663
Barley -
Wheat TraesCS2D02G287900 , TraesCS2B02G306500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G038600 monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
2 Sobic.004G156250 - -
3 Sobic.002G238300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLE6 - cellulose synthase-like family E, expressed -
4 Sobic.004G108800 cytochrome P450, putative, expressed -
5 Sobic.007G038500 aquaporin protein, putative, expressed K09874: aquaporin NIP
6 Sobic.001G131001 - -
7 Sobic.009G015166 - -
8 Sobic.007G156800 "SGL1(Ortholog in rice:Nakagawa et al., 2012)"(PubMedID : 31659907)@expressed protein -
9 Sobic.007G106500 "C3 PTPC, unknown so far"(PubMedID : 2308851)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
10 Sobic.004G034200 STRUBBELIG-RECEPTOR FAMILY 1 precursor, putative, expressed -
11 Sobic.005G088800 expressed protein -
12 Sobic.004G156300 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@OsSAUR10 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
13 Sobic.002G312700 myosin heavy chain-related, putative, expressed -
14 Sobic.007G172500 zinc finger family protein, putative, expressed -
15 Sobic.008G108950 - -
16 Sobic.007G041600 - -
17 Sobic.006G117500 polygalacturonase inhibitor 1 precursor, putative, expressed -
18 Sobic.001G238500 similar to Putative uncharacterized protein(PubMedID : 29862293)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed K13691: pathogen-inducible salicylic acid glucosyltransferase
19 Sobic.005G104200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.002G385800 CSLA7 - cellulose synthase-like family A@ mannan synthase, expressed -


Gene co-expression network
sample Sobic004G161200 Sobic004G161200 Sobic007G038600 Sobic007G038600 Sobic004G161200--Sobic007G038600 Sobic004G156250 Sobic004G156250 Sobic004G161200--Sobic004G156250 Sobic002G238300 Sobic002G238300 Sobic004G161200--Sobic002G238300 Sobic004G108800 Sobic004G108800 Sobic004G161200--Sobic004G108800 Sobic007G038500 Sobic007G038500 Sobic004G161200--Sobic007G038500 Sobic001G131001 Sobic001G131001 Sobic004G161200--Sobic001G131001 Sobic009G015166 Sobic009G015166 Sobic004G161200--Sobic009G015166 Sobic007G156800 Sobic007G156800 Sobic004G161200--Sobic007G156800 Sobic007G106500 Sobic007G106500 Sobic004G161200--Sobic007G106500 Sobic004G034200 Sobic004G034200 Sobic007G038600--Sobic004G034200 Sobic008G091557 Sobic008G091557 Sobic007G038600--Sobic008G091557 Sobic007G038600--Sobic001G131001 Sobic007G038600--Sobic007G106500 Sobic007G038600--Sobic004G108800 Sobic007G038600--Sobic004G156250 Sobic007G038600--Sobic007G038500 Sobic006G117500 Sobic006G117500 Sobic007G038600--Sobic006G117500 Sobic007G038600--Sobic009G015166 Sobic004G156250--Sobic004G108800 Sobic005G104200 Sobic005G104200 Sobic004G156250--Sobic005G104200 Sobic001G238500 Sobic001G238500 Sobic004G156250--Sobic001G238500 Sobic005G149600 Sobic005G149600 Sobic004G156250--Sobic005G149600 Sobic004G156250--Sobic001G131001 Sobic004G126500 Sobic004G126500 Sobic004G156250--Sobic004G126500 Sobic004G156250--Sobic009G015166 Sobic004G156250--Sobic006G117500 Sobic005G089200 Sobic005G089200 Sobic004G156250--Sobic005G089200 Sobic001G067800 Sobic001G067800 Sobic002G238300--Sobic001G067800 Sobic005G134600 Sobic005G134600 Sobic002G238300--Sobic005G134600 Sobic003G445000 Sobic003G445000 Sobic002G238300--Sobic003G445000 Sobic002G238300--Sobic007G106500 Sobic002G238300--Sobic004G161200 Sobic007G120000 Sobic007G120000 Sobic002G238300--Sobic007G120000 Sobic002G238300--Sobic001G131001 Sobic003G287450 Sobic003G287450 Sobic002G238300--Sobic003G287450 Sobic004G161900 Sobic004G161900 Sobic002G238300--Sobic004G161900 Sobic004G108800--Sobic005G149600 Sobic004G108800--Sobic005G089200 Sobic004G108800--Sobic007G156800 Sobic004G108800--Sobic006G117500 Sobic004G108800--Sobic004G156250 Sobic003G015200 Sobic003G015200 Sobic004G108800--Sobic003G015200 Sobic004G108800--Sobic009G015166 Sobic005G152500 Sobic005G152500 Sobic004G108800--Sobic005G152500 Sobic004G108800--Sobic007G038500 Sobic007G038500--Sobic004G108800 Sobic007G038500--Sobic007G156800 Sobic007G038500--Sobic009G015166 Sobic008G108950 Sobic008G108950 Sobic007G038500--Sobic008G108950 Sobic005G064900 Sobic005G064900 Sobic007G038500--Sobic005G064900 Sobic007G038500--Sobic004G156250 Sobic007G038500--Sobic005G149600 Sobic007G038500--Sobic005G089200 Sobic007G038500--Sobic003G015200 Sobic001G131001--Sobic004G156250 Sobic001G131001--Sobic005G104200 Sobic001G131001--Sobic001G238500 Sobic001G348800 Sobic001G348800 Sobic001G131001--Sobic001G348800 Sobic008G133000 Sobic008G133000 Sobic001G131001--Sobic008G133000 Sobic001G131001--Sobic004G126500 Sobic001G464300 Sobic001G464300 Sobic001G131001--Sobic001G464300 Sobic005G115300 Sobic005G115300 Sobic001G131001--Sobic005G115300 Sobic001G131001--Sobic006G117500 Sobic009G015166--Sobic001G238500 Sobic009G015166--Sobic006G117500 Sobic005G066300 Sobic005G066300 Sobic009G015166--Sobic005G066300 Sobic009G015166--Sobic004G108800 Sobic009G015166--Sobic005G104200 Sobic009G015166--Sobic004G126500 Sobic002G411000 Sobic002G411000 Sobic009G015166--Sobic002G411000 Sobic009G015166--Sobic004G156250 Sobic006G009700 Sobic006G009700 Sobic009G015166--Sobic006G009700 Sobic007G156800--Sobic004G108800 Sobic007G156800--Sobic005G064900 Sobic007G156800--Sobic003G015200 Sobic007G156800--Sobic008G108950 Sobic005G088700 Sobic005G088700 Sobic007G156800--Sobic005G088700 Sobic007G156800--Sobic007G038500 Sobic007G156800--Sobic005G089200 Sobic007G156800--Sobic005G149600 Sobic009G015500 Sobic009G015500 Sobic007G156800--Sobic009G015500 Sobic007G106500--Sobic007G038600 Sobic001G173700 Sobic001G173700 Sobic007G106500--Sobic001G173700 Sobic007G106500--Sobic001G238500 Sobic007G106500--Sobic004G126500 Sobic007G106500--Sobic001G131001 Sobic007G106500--Sobic005G104200 Sobic007G172500 Sobic007G172500 Sobic007G106500--Sobic007G172500 Sobic007G020700 Sobic007G020700 Sobic007G106500--Sobic007G020700 Sobic007G106500--Sobic001G464300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.