Gene annotation
Transcriptome id Sobic.004G168100.1
Synonym AGL80, FEM111
Functional annotation OsMADS89 - MADS-box family gene with M-gamma type-box, expressed
UniProt C5XU07
Pfam PF00319
Panther DB PTHR11945 PTHR11945:SF161
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT5G48670 : AGAMOUS-like 80
RAP-DB (Rice) LOC_Os03g38610.1 : OsMADS87 - MADS-box family gene with M-gamma type-box, expressed
MaizeGDB (Corn) -
Brachypodium KQK04003
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G240600 VQ domain containing protein, putative, expressed -
2 Sobic.002G057900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed K03671: thioredoxin 1
3 Sobic.001G365100 lipase, putative, expressed -
4 Sobic.007G057000 expressed protein -
5 Sobic.003G426100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
6 Sobic.006G084600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@amino acid permease family protein, putative, expressed -
7 Sobic.010G088700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphate-induced protein 1 conserved region domain containing protein, expressed -
8 Sobic.009G217700 - -
9 Sobic.003G317100 expressed protein -
10 Sobic.007G066932 - -
11 Sobic.001G433900 PLA IIIA/PLP7, putative, expressed -
12 Sobic.003G364000 glycosyl hydrolase, putative, expressed K01183: chitinase
13 Sobic.008G082200 osFTL7 FT-Like7 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
14 Sobic.003G191500 protein transport protein Sec61 subunit beta, putative, expressed K09481: SEC61B, protein transport protein SEC61 subunit beta
15 Sobic.002G203700 hypothetical protein -
16 Sobic.003G437200 sulfotransferase domain containing protein, expressed -
17 Sobic.007G155100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
18 Sobic.002G195400 "Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@Protein mannitol dehydrogenase (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
19 Sobic.003G307300 - -
20 Sobic.003G319700 NADPH-dependent FMN reductase domain containing protein, expressed K03809: NAD(P)H dehydrogenase (quinone)


Gene co-expression network
sample Sobic004G168100 Sobic004G168100 Sobic003G240600 Sobic003G240600 Sobic004G168100--Sobic003G240600 Sobic002G057900 Sobic002G057900 Sobic004G168100--Sobic002G057900 Sobic001G365100 Sobic001G365100 Sobic004G168100--Sobic001G365100 Sobic007G057000 Sobic007G057000 Sobic004G168100--Sobic007G057000 Sobic003G426100 Sobic003G426100 Sobic004G168100--Sobic003G426100 Sobic006G084600 Sobic006G084600 Sobic004G168100--Sobic006G084600 Sobic010G088700 Sobic010G088700 Sobic004G168100--Sobic010G088700 Sobic009G217700 Sobic009G217700 Sobic004G168100--Sobic009G217700 Sobic003G317100 Sobic003G317100 Sobic004G168100--Sobic003G317100 Sobic001G317200 Sobic001G317200 Sobic003G240600--Sobic001G317200 Sobic001G325000 Sobic001G325000 Sobic003G240600--Sobic001G325000 Sobic003G240600--Sobic006G084600 Sobic001G348700 Sobic001G348700 Sobic003G240600--Sobic001G348700 Sobic004G216600 Sobic004G216600 Sobic003G240600--Sobic004G216600 Sobic003G252800 Sobic003G252800 Sobic003G240600--Sobic003G252800 Sobic003G240600--Sobic003G317100 Sobic002G414600 Sobic002G414600 Sobic003G240600--Sobic002G414600 Sobic003G437200 Sobic003G437200 Sobic003G240600--Sobic003G437200 Sobic001G097600 Sobic001G097600 Sobic002G057900--Sobic001G097600 Sobic002G203700 Sobic002G203700 Sobic002G057900--Sobic002G203700 Sobic002G057900--Sobic007G057000 Sobic002G034800 Sobic002G034800 Sobic002G057900--Sobic002G034800 Sobic002G057900--Sobic003G240600 Sobic003G319700 Sobic003G319700 Sobic002G057900--Sobic003G319700 Sobic002G057900--Sobic002G414600 Sobic002G415100 Sobic002G415100 Sobic002G057900--Sobic002G415100 Sobic010G066700 Sobic010G066700 Sobic002G057900--Sobic010G066700 Sobic010G259500 Sobic010G259500 Sobic001G365100--Sobic010G259500 Sobic007G155100 Sobic007G155100 Sobic001G365100--Sobic007G155100 Sobic004G229800 Sobic004G229800 Sobic001G365100--Sobic004G229800 Sobic007G039600 Sobic007G039600 Sobic001G365100--Sobic007G039600 Sobic001G365100--Sobic006G084600 Sobic001G365100--Sobic007G057000 Sobic001G365100--Sobic003G317100 Sobic001G365100--Sobic003G437200 Sobic001G365100--Sobic010G066700 Sobic007G057000--Sobic010G066700 Sobic002G188900 Sobic002G188900 Sobic007G057000--Sobic002G188900 Sobic009G183400 Sobic009G183400 Sobic007G057000--Sobic009G183400 Sobic004G304625 Sobic004G304625 Sobic007G057000--Sobic004G304625 Sobic001G119400 Sobic001G119400 Sobic007G057000--Sobic001G119400 Sobic007G057000--Sobic007G155100 Sobic001G423800 Sobic001G423800 Sobic007G057000--Sobic001G423800 Sobic003G033900 Sobic003G033900 Sobic007G057000--Sobic003G033900 Sobic004G100700 Sobic004G100700 Sobic007G057000--Sobic004G100700 Sobic007G066932 Sobic007G066932 Sobic003G426100--Sobic007G066932 Sobic002G195400 Sobic002G195400 Sobic003G426100--Sobic002G195400 Sobic010G035700 Sobic010G035700 Sobic003G426100--Sobic010G035700 Sobic010G102300 Sobic010G102300 Sobic003G426100--Sobic010G102300 Sobic007G067350 Sobic007G067350 Sobic003G426100--Sobic007G067350 Sobic004G304300 Sobic004G304300 Sobic003G426100--Sobic004G304300 Sobic001G319700 Sobic001G319700 Sobic003G426100--Sobic001G319700 Sobic007G135201 Sobic007G135201 Sobic003G426100--Sobic007G135201 Sobic007G067600 Sobic007G067600 Sobic003G426100--Sobic007G067600 Sobic004G221500 Sobic004G221500 Sobic006G084600--Sobic004G221500 Sobic006G084600--Sobic007G067350 Sobic006G084600--Sobic007G155100 Sobic006G084600--Sobic003G317100 Sobic006G084600--Sobic003G437200 Sobic006G084600--Sobic007G066932 Sobic006G084600--Sobic001G348700 Sobic010G084300 Sobic010G084300 Sobic006G084600--Sobic010G084300 Sobic001G231600 Sobic001G231600 Sobic006G084600--Sobic001G231600 Sobic003G364000 Sobic003G364000 Sobic010G088700--Sobic003G364000 Sobic010G088700--Sobic010G259500 Sobic010G088700--Sobic002G034800 Sobic010G088700--Sobic009G217700 Sobic010G088700--Sobic001G365100 Sobic001G433900 Sobic001G433900 Sobic010G088700--Sobic001G433900 Sobic010G088700--Sobic003G319700 Sobic010G088700--Sobic010G066700 Sobic005G213500 Sobic005G213500 Sobic010G088700--Sobic005G213500 Sobic001G449600 Sobic001G449600 Sobic009G217700--Sobic001G449600 Sobic009G217700--Sobic003G364000 Sobic009G217700--Sobic003G319700 Sobic003G255200 Sobic003G255200 Sobic009G217700--Sobic003G255200 Sobic009G139700 Sobic009G139700 Sobic009G217700--Sobic009G139700 Sobic004G107700 Sobic004G107700 Sobic009G217700--Sobic004G107700 Sobic005G005600 Sobic005G005600 Sobic009G217700--Sobic005G005600 Sobic009G217700--Sobic002G034800 Sobic005G013600 Sobic005G013600 Sobic009G217700--Sobic005G013600 Sobic003G286600 Sobic003G286600 Sobic003G317100--Sobic003G286600 Sobic006G099900 Sobic006G099900 Sobic003G317100--Sobic006G099900 Sobic003G317100--Sobic006G084600 Sobic003G317100--Sobic004G221500 Sobic003G352300 Sobic003G352300 Sobic003G317100--Sobic003G352300 Sobic005G045900 Sobic005G045900 Sobic003G317100--Sobic005G045900 Sobic001G435000 Sobic001G435000 Sobic003G317100--Sobic001G435000 Sobic010G044400 Sobic010G044400 Sobic003G317100--Sobic010G044400 Sobic003G317100--Sobic004G229800
Octagon: transcription factors


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