Gene annotation
Transcriptome id Sobic.004G181500.1
Synonym XRCC3, Sb04g023090, ATXRCC3
Functional annotation DNA repair protein Rad51, putative, expressed
UniProt A0A1Z5RP56
Pfam PF08423
Panther DB PTHR22942 PTHR22942:SF24
NCBI CDD KOG1564; DNA repair protein RHP57
KEGG Orthology K10880; DNA-repair protein XRCC3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G57450 : homolog of X-ray repair cross complementing 3 (XRCC3)
RAP-DB (Rice) LOC_Os02g35450.1 : DNA repair protein Rad51, putative, expressed
MaizeGDB (Corn) Zm00025a020693
Brachypodium -
Barley HORVU6Hr1G046290.10 , HORVU6Hr1G046290.7 , HORVU6Hr1G046290.6 , HORVU6Hr1G046290.5 , HORVU6Hr1G046290.4 , HORVU6Hr1G046290.3 , HORVU6Hr1G046290.2 , HORVU6Hr1G046290.1 , HORVU6Hr1G046290.8
Wheat TraesCS6D02G182800 , TraesCS6A02G199100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G079700 pentatricopeptide, putative, expressed -
2 Sobic.001G258000 tyrosine protein kinase domain containing protein, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
3 Sobic.002G259400 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
4 Sobic.001G261597 - K07904: Ras-related protein Rab-11A
5 Sobic.004G250300 eukaryotic aspartyl protease domain containing protein, expressed -
6 Sobic.010G146600 cyclin-dependent kinase F-1, putative, expressed -
7 Sobic.004G349300 tyrosine protein kinase domain containing protein, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
8 Sobic.003G119400 PUR ALPHA-1, putative, expressed -
9 Sobic.004G301900 potyvirus VPg interacting protein, putative, expressed -
10 Sobic.004G227300 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
11 Sobic.007G020300 AT hook motif domain containing protein, expressed -
12 Sobic.001G427500 B4-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
13 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
14 Sobic.003G000150 - -
15 Sobic.006G242300 - -
16 Sobic.005G037900 sialyltransferase family domain containing protein, expressed -
17 Sobic.002G136900 - -
18 Sobic.004G086100 tetratricopeptide repeat domain containing protein, expressed -
19 Sobic.010G045833 - -
20 Sobic.009G114800 thioesterase family protein, putative, expressed K17362: acyl-coenzyme A thioesterase 13


Gene co-expression network
sample Sobic004G181500 Sobic004G181500 Sobic007G079700 Sobic007G079700 Sobic004G181500--Sobic007G079700 Sobic001G258000 Sobic001G258000 Sobic004G181500--Sobic001G258000 Sobic002G259400 Sobic002G259400 Sobic004G181500--Sobic002G259400 Sobic001G261597 Sobic001G261597 Sobic004G181500--Sobic001G261597 Sobic004G250300 Sobic004G250300 Sobic004G181500--Sobic004G250300 Sobic010G146600 Sobic010G146600 Sobic004G181500--Sobic010G146600 Sobic004G349300 Sobic004G349300 Sobic004G181500--Sobic004G349300 Sobic003G119400 Sobic003G119400 Sobic004G181500--Sobic003G119400 Sobic004G301900 Sobic004G301900 Sobic004G181500--Sobic004G301900 Sobic009G114800 Sobic009G114800 Sobic007G079700--Sobic009G114800 Sobic006G054500 Sobic006G054500 Sobic007G079700--Sobic006G054500 Sobic006G262900 Sobic006G262900 Sobic007G079700--Sobic006G262900 Sobic002G273900 Sobic002G273900 Sobic007G079700--Sobic002G273900 Sobic009G199700 Sobic009G199700 Sobic007G079700--Sobic009G199700 Sobic003G116700 Sobic003G116700 Sobic007G079700--Sobic003G116700 Sobic007G079700--Sobic004G301900 Sobic004G253000 Sobic004G253000 Sobic007G079700--Sobic004G253000 Sobic004G272300 Sobic004G272300 Sobic007G079700--Sobic004G272300 Sobic001G258000--Sobic007G079700 Sobic001G427500 Sobic001G427500 Sobic001G258000--Sobic001G427500 Sobic005G096300 Sobic005G096300 Sobic001G258000--Sobic005G096300 Sobic001G258000--Sobic009G114800 Sobic004G027900 Sobic004G027900 Sobic001G258000--Sobic004G027900 Sobic001G258000--Sobic004G349300 Sobic007G062500 Sobic007G062500 Sobic001G258000--Sobic007G062500 Sobic001G053900 Sobic001G053900 Sobic001G258000--Sobic001G053900 Sobic001G258000--Sobic004G181500 Sobic002G259400--Sobic003G119400 Sobic004G074300 Sobic004G074300 Sobic002G259400--Sobic004G074300 Sobic001G041200 Sobic001G041200 Sobic002G259400--Sobic001G041200 Sobic002G268400 Sobic002G268400 Sobic002G259400--Sobic002G268400 Sobic009G033900 Sobic009G033900 Sobic002G259400--Sobic009G033900 Sobic010G269100 Sobic010G269100 Sobic002G259400--Sobic010G269100 Sobic006G281500 Sobic006G281500 Sobic002G259400--Sobic006G281500 Sobic001G263000 Sobic001G263000 Sobic002G259400--Sobic001G263000 Sobic010G085200 Sobic010G085200 Sobic002G259400--Sobic010G085200 Sobic004G227300 Sobic004G227300 Sobic001G261597--Sobic004G227300 Sobic003G000150 Sobic003G000150 Sobic001G261597--Sobic003G000150 Sobic004G214100 Sobic004G214100 Sobic001G261597--Sobic004G214100 Sobic002G073900 Sobic002G073900 Sobic001G261597--Sobic002G073900 Sobic003G359900 Sobic003G359900 Sobic001G261597--Sobic003G359900 Sobic001G261597--Sobic001G427500 Sobic005G072200 Sobic005G072200 Sobic001G261597--Sobic005G072200 Sobic002G040800 Sobic002G040800 Sobic001G261597--Sobic002G040800 Sobic009G190800 Sobic009G190800 Sobic001G261597--Sobic009G190800 Sobic002G092300 Sobic002G092300 Sobic004G250300--Sobic002G092300 Sobic003G405700 Sobic003G405700 Sobic004G250300--Sobic003G405700 Sobic003G250500 Sobic003G250500 Sobic004G250300--Sobic003G250500 Sobic002G180000 Sobic002G180000 Sobic004G250300--Sobic002G180000 Sobic004G250300--Sobic004G301900 Sobic004G250300--Sobic002G259400 Sobic004G250300--Sobic009G033900 Sobic010G090900 Sobic010G090900 Sobic004G250300--Sobic010G090900 Sobic002G187801 Sobic002G187801 Sobic004G250300--Sobic002G187801 Sobic010G249300 Sobic010G249300 Sobic010G146600--Sobic010G249300 Sobic010G146600--Sobic003G119400 Sobic004G185600 Sobic004G185600 Sobic010G146600--Sobic004G185600 Sobic010G146600--Sobic003G250500 Sobic002G317300 Sobic002G317300 Sobic010G146600--Sobic002G317300 Sobic001G291100 Sobic001G291100 Sobic010G146600--Sobic001G291100 Sobic001G281600 Sobic001G281600 Sobic010G146600--Sobic001G281600 Sobic009G133400 Sobic009G133400 Sobic010G146600--Sobic009G133400 Sobic010G251100 Sobic010G251100 Sobic010G146600--Sobic010G251100 Sobic005G093400 Sobic005G093400 Sobic004G349300--Sobic005G093400 Sobic009G245700 Sobic009G245700 Sobic004G349300--Sobic009G245700 Sobic004G349300--Sobic001G258000 Sobic001G528300 Sobic001G528300 Sobic004G349300--Sobic001G528300 Sobic002G193400 Sobic002G193400 Sobic004G349300--Sobic002G193400 Sobic002G117200 Sobic002G117200 Sobic004G349300--Sobic002G117200 Sobic003G402200 Sobic003G402200 Sobic004G349300--Sobic003G402200 Sobic002G027700 Sobic002G027700 Sobic004G349300--Sobic002G027700 Sobic009G205600 Sobic009G205600 Sobic004G349300--Sobic009G205600 Sobic003G119400--Sobic004G074300 Sobic003G119400--Sobic001G041200 Sobic003G119400--Sobic002G259400 Sobic003G119400--Sobic010G146600 Sobic006G216000 Sobic006G216000 Sobic003G119400--Sobic006G216000 Sobic006G272200 Sobic006G272200 Sobic003G119400--Sobic006G272200 Sobic006G242300 Sobic006G242300 Sobic003G119400--Sobic006G242300 Sobic003G119400--Sobic002G268400 Sobic002G306400 Sobic002G306400 Sobic003G119400--Sobic002G306400 Sobic004G301900--Sobic010G090900 Sobic004G301900--Sobic003G250500 Sobic002G113900 Sobic002G113900 Sobic004G301900--Sobic002G113900 Sobic004G059000 Sobic004G059000 Sobic004G301900--Sobic004G059000 Sobic004G301900--Sobic004G253000 Sobic001G512600 Sobic001G512600 Sobic004G301900--Sobic001G512600 Sobic007G019800 Sobic007G019800 Sobic004G301900--Sobic007G019800 Sobic001G051200 Sobic001G051200 Sobic004G301900--Sobic001G051200 Sobic004G356900 Sobic004G356900 Sobic004G301900--Sobic004G356900
Octagon: transcription factors


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